CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = I562I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12562I562II4954IsynatCatT5084220.83070915124-15126
ORF1ab/nsp12562I562II4954IsynatCatA508860.16929115124-15126

Details of the mutation I562I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12562I562IatCatT422508All0.000081
ORF1ab/nsp12562I562IatCatA86508All0.000016
ORF1ab/nsp12562I562IatCatT7790B.1.1.70.000069
ORF1ab/nsp12562I562IatCatA1390B.1.1.70.000012
ORF1ab/nsp12562I562IatCatA3641P.1.140.001721
ORF1ab/nsp12562I562IatCatT541P.1.140.000239
ORF1ab/nsp12562I562IatCatT3737B.1.1770.000487
ORF1ab/nsp12562I562IatCatT2727AY.250.000162
ORF1ab/nsp12562I562IatCatT2727B.1.20.000238
ORF1ab/nsp12562I562IatCatT2125AY.40.000033
ORF1ab/nsp12562I562IatCatA425AY.40.000006
ORF1ab/nsp12562I562IatCatT2021B.1.617.20.000075
ORF1ab/nsp12562I562IatCatA121B.1.617.20.000004
ORF1ab/nsp12562I562IatCatT1919A.180.95
ORF1ab/nsp12562I562IatCatT1618B.10.000147
ORF1ab/nsp12562I562IatCatA218B.10.000018
ORF1ab/nsp12562I562IatCatT1818B.1.1600.000561
ORF1ab/nsp12562I562IatCatT913AY.430.00004
ORF1ab/nsp12562I562IatCatA413AY.430.000018
ORF1ab/nsp12562I562IatCatA710B.1.5250.000792
ORF1ab/nsp12562I562IatCatT310B.1.5250.000339
ORF1ab/nsp12562I562IatCatT89AY.30.00008
ORF1ab/nsp12562I562IatCatA19AY.30.00001
ORF1ab/nsp12562I562IatCatT69AY.440.000037
ORF1ab/nsp12562I562IatCatA39AY.440.000018
ORF1ab/nsp12562I562IatCatT99B.1.1.3160.008326
ORF1ab/nsp12562I562IatCatT88B.1.177.810.001515
ORF1ab/nsp12562I562IatCatT77B.1.10.000127
ORF1ab/nsp12562I562IatCatT66AY.730.003992
ORF1ab/nsp12562I562IatCatT66P.10.000095
ORF1ab/nsp12562I562IatCatT45AY.1030.000025
ORF1ab/nsp12562I562IatCatA15AY.1030.000006
ORF1ab/nsp12562I562IatCatT55AY.4.20.000108
ORF1ab/nsp12562I562IatCatT55AY.50.000103
ORF1ab/nsp12562I562IatCatT55C.370.00058
ORF1ab/nsp12562I562IatCatT44B.1.36.170.001976
ORF1ab/nsp12562I562IatCatT33A.210.00831
ORF1ab/nsp12562I562IatCatT33AY.1200.000112
ORF1ab/nsp12562I562IatCatT33AY.290.000047
ORF1ab/nsp12562I562IatCatA23AY.60.000082
ORF1ab/nsp12562I562IatCatT13AY.60.000041
ORF1ab/nsp12562I562IatCatT33B.1.1.2530.007519
ORF1ab/nsp12562I562IatCatT33B.1.2320.001612
ORF1ab/nsp12562I562IatCatA23B.1.4290.000047
ORF1ab/nsp12562I562IatCatT13B.1.4290.000024
ORF1ab/nsp12562I562IatCatA12A.10.000282
ORF1ab/nsp12562I562IatCatT12A.10.000282
ORF1ab/nsp12562I562IatCatT22A.190.018868
ORF1ab/nsp12562I562IatCatA12AY.200.000039
ORF1ab/nsp12562I562IatCatT12AY.200.000039
ORF1ab/nsp12562I562IatCatT22AY.9.2.10.003953
ORF1ab/nsp12562I562IatCatT22AY.98.10.000097
ORF1ab/nsp12562I562IatCatT22B.1.1.5190.000079
ORF1ab/nsp12562I562IatCatT22B.1.1.700.000682
ORF1ab/nsp12562I562IatCatT22B.1.177.40.000422
ORF1ab/nsp12562I562IatCatT22B.1.2210.000142
ORF1ab/nsp12562I562IatCatT22B.1.2580.000133
ORF1ab/nsp12562I562IatCatT22B.1.36.70.008
ORF1ab/nsp12562I562IatCatT12B.1.6120.002653
ORF1ab/nsp12562I562IatCatA12B.1.6120.002653
ORF1ab/nsp12562I562IatCatT22R.10.00018
ORF1ab/nsp12562I562IatCatA110.055556
ORF1ab/nsp12562I562IatCatT11A0.000387
ORF1ab/nsp12562I562IatCatT11A.2.50.000499
ORF1ab/nsp12562I562IatCatT11AY.1020.000027
ORF1ab/nsp12562I562IatCatT11AY.1100.000113
ORF1ab/nsp12562I562IatCatT11AY.1110.000183
ORF1ab/nsp12562I562IatCatT11AY.1190.000035
ORF1ab/nsp12562I562IatCatT11AY.340.000097
ORF1ab/nsp12562I562IatCatT11AY.360.000148
ORF1ab/nsp12562I562IatCatA11AY.400.000964
ORF1ab/nsp12562I562IatCatT11AY.420.00004
ORF1ab/nsp12562I562IatCatT11AY.46.50.000198
ORF1ab/nsp12562I562IatCatT11AY.470.000031
ORF1ab/nsp12562I562IatCatT11AY.610.000105
ORF1ab/nsp12562I562IatCatA11AY.670.000464
ORF1ab/nsp12562I562IatCatA11AY.7.10.000113
ORF1ab/nsp12562I562IatCatT11AY.980.000079
ORF1ab/nsp12562I562IatCatT11B.1.1.2220.000204
ORF1ab/nsp12562I562IatCatT11B.1.1.3060.000438
ORF1ab/nsp12562I562IatCatT11B.1.1.370.000193
ORF1ab/nsp12562I562IatCatT11B.1.1260.001276
ORF1ab/nsp12562I562IatCatT11B.1.177.330.001645
ORF1ab/nsp12562I562IatCatA11B.1.177.730.000566
ORF1ab/nsp12562I562IatCatT11B.1.2340.000132
ORF1ab/nsp12562I562IatCatT11B.1.2400.000216
ORF1ab/nsp12562I562IatCatT11B.1.3510.00003
ORF1ab/nsp12562I562IatCatT11B.1.3900.010638
ORF1ab/nsp12562I562IatCatT11B.1.438.10.000107
ORF1ab/nsp12562I562IatCatT11B.1.4990.00105
ORF1ab/nsp12562I562IatCatT11B.1.5600.00463
ORF1ab/nsp12562I562IatCatT11B.1.5750.000303
ORF1ab/nsp12562I562IatCatA11B.1.5960.000087
ORF1ab/nsp12562I562IatCatT11B.1.619.10.000641
ORF1ab/nsp12562I562IatCatA11B.1.6360.006711
ORF1ab/nsp12562I562IatCatT11B.470.020408
ORF1ab/nsp12562I562IatCatT11C.10.002392
ORF1ab/nsp12562I562IatCatT11P.60.003145