CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = H613H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12613H613HH5005HsyncaCcaT11426831142683115277-15279

Details of the mutation H613H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12613H613HcaCcaT11426831142683All0.218552
ORF1ab/nsp12613H613HcaCcaT11107521110752B.1.1.70.994371
ORF1ab/nsp12613H613HcaCcaT78887888Q.10.996463
ORF1ab/nsp12613H613HcaCcaT68606860Q.30.994924
ORF1ab/nsp12613H613HcaCcaT45984598Q.80.758245
ORF1ab/nsp12613H613HcaCcaT29612961B.1.10.053715
ORF1ab/nsp12613H613HcaCcaT21842184Q.40.993179
ORF1ab/nsp12613H613HcaCcaT16291629Q.20.999387
ORF1ab/nsp12613H613HcaCcaT14541454B.10.013318
ORF1ab/nsp12613H613HcaCcaT898898Q.70.997778
ORF1ab/nsp12613H613HcaCcaT500500AY.40.000778
ORF1ab/nsp12613H613HcaCcaT214214B.1.177.730.121178
ORF1ab/nsp12613H613HcaCcaT151151Q.61
ORF1ab/nsp12613H613HcaCcaT115115AY.290.001814
ORF1ab/nsp12613H613HcaCcaT104104B.1.617.20.000392
ORF1ab/nsp12613H613HcaCcaT9494B.1.1770.001238
ORF1ab/nsp12613H613HcaCcaT8585AY.30.000845
ORF1ab/nsp12613H613HcaCcaT8383B.1.3750.068033
ORF1ab/nsp12613H613HcaCcaT7979P.10.001245
ORF1ab/nsp12613H613HcaCcaT7878B.1.6370.0057
ORF1ab/nsp12613H613HcaCcaT7676B.1.20.000669
ORF1ab/nsp12613H613HcaCcaT7676B.1.360.011088
ORF1ab/nsp12613H613HcaCcaT7070AY.440.000426
ORF1ab/nsp12613H613HcaCcaT6767B.1.1.3110.023997
ORF1ab/nsp12613H613HcaCcaT6464AY.430.000284
ORF1ab/nsp12613H613HcaCcaT5959Q.51
ORF1ab/nsp12613H613HcaCcaT5858B.1.5260.001363
ORF1ab/nsp12613H613HcaCcaT5353B.1.5760.048051
ORF1ab/nsp12613H613HcaCcaT4646B0.005879
ORF1ab/nsp12613H613HcaCcaT4141B.1.1.4090.116147
ORF1ab/nsp12613H613HcaCcaT3939B.1.177.70.006429
ORF1ab/nsp12613H613HcaCcaT3838B.1.1.2220.007752
ORF1ab/nsp12613H613HcaCcaT3838B.1.5960.003311
ORF1ab/nsp12613H613HcaCcaT3636AY.250.000217
ORF1ab/nsp12613H613HcaCcaT3636AY.260.001019
ORF1ab/nsp12613H613HcaCcaT3333B.1.4290.000776
ORF1ab/nsp12613H613HcaCcaT3131B.1.2210.002202
ORF1ab/nsp12613H613HcaCcaT3030B.1.2580.001996
ORF1ab/nsp12613H613HcaCcaT3030B.1.3510.000892
ORF1ab/nsp12613H613HcaCcaT2929AY.740.003354
ORF1ab/nsp12613H613HcaCcaT2626B.1.1.5190.001032
ORF1ab/nsp12613H613HcaCcaT2424B.1.177.430.035451
ORF1ab/nsp12613H613HcaCcaT2323AY.1020.00061
ORF1ab/nsp12613H613HcaCcaT2222AY.1030.000137
ORF1ab/nsp12613H613HcaCcaT2222B.1.1.5070.191304
ORF1ab/nsp12613H613HcaCcaT2222B.1.4270.001111
ORF1ab/nsp12613H613HcaCcaT2121B.1.177.860.003853
ORF1ab/nsp12613H613HcaCcaT2121P.1.10.006671
ORF1ab/nsp12613H613HcaCcaT2020AY.390.000494
ORF1ab/nsp12613H613HcaCcaT1818AY.860.014938
ORF1ab/nsp12613H613HcaCcaT1818B.1.1.1610.063604
ORF1ab/nsp12613H613HcaCcaT1818P.1.160.006734
ORF1ab/nsp12613H613HcaCcaT1717AY.470.000529
ORF1ab/nsp12613H613HcaCcaT1616AY.46.60.001155
ORF1ab/nsp12613H613HcaCcaT1616P.20.002986
ORF1ab/nsp12613H613HcaCcaT1515AY.200.000583
ORF1ab/nsp12613H613HcaCcaT1515B.1.1.2200.027881
ORF1ab/nsp12613H613HcaCcaT1414B.1.1600.000437
ORF1ab/nsp12613H613HcaCcaT1414C.370.001625
ORF1ab/nsp12613H613HcaCcaT1313B.1.258.170.001352
ORF1ab/nsp12613H613HcaCcaT1212B.1.6090.005753
ORF1ab/nsp12613H613HcaCcaT11110.611111
ORF1ab/nsp12613H613HcaCcaT1111B.1.3770.050228
ORF1ab/nsp12613H613HcaCcaT1111B.1.5950.002871
ORF1ab/nsp12613H613HcaCcaT1010AY.1140.002311
ORF1ab/nsp12613H613HcaCcaT99B.1.617.10.001161
ORF1ab/nsp12613H613HcaCcaT99C.36.30.005105
ORF1ab/nsp12613H613HcaCcaT99P.1.150.002091
ORF1ab/nsp12613H613HcaCcaT88AY.39.10.000317
ORF1ab/nsp12613H613HcaCcaT88B.1.1.4320.010127
ORF1ab/nsp12613H613HcaCcaT88B.1.1.5280.038462
ORF1ab/nsp12613H613HcaCcaT88B.1.3110.002197
ORF1ab/nsp12613H613HcaCcaT88P.1.120.003872
ORF1ab/nsp12613H613HcaCcaT88R.10.00072
ORF1ab/nsp12613H613HcaCcaT77AY.1000.000322
ORF1ab/nsp12613H613HcaCcaT77AY.1090.005178
ORF1ab/nsp12613H613HcaCcaT77AY.300.00277
ORF1ab/nsp12613H613HcaCcaT77AY.420.000282
ORF1ab/nsp12613H613HcaCcaT77AY.750.000392
ORF1ab/nsp12613H613HcaCcaT77B.1.1.3120.013384
ORF1ab/nsp12613H613HcaCcaT77B.1.1.580.037634
ORF1ab/nsp12613H613HcaCcaT77B.1.177.810.001325
ORF1ab/nsp12613H613HcaCcaT77B.1.4110.025926
ORF1ab/nsp12613H613HcaCcaT77B.1.6230.003755
ORF1ab/nsp12613H613HcaCcaT77P.1.170.001132
ORF1ab/nsp12613H613HcaCcaT66A.2.50.002994
ORF1ab/nsp12613H613HcaCcaT66B.1.1390.004399
ORF1ab/nsp12613H613HcaCcaT66B.1.2400.001293
ORF1ab/nsp12613H613HcaCcaT66B.1.2410.00487
ORF1ab/nsp12613H613HcaCcaT55A.300.714286
ORF1ab/nsp12613H613HcaCcaT55AY.920.001436
ORF1ab/nsp12613H613HcaCcaT55AY.980.000395
ORF1ab/nsp12613H613HcaCcaT55B.1.1.280.001556
ORF1ab/nsp12613H613HcaCcaT55B.1.1.390.002548
ORF1ab/nsp12613H613HcaCcaT55B.1.2060.004078
ORF1ab/nsp12613H613HcaCcaT55B.1.214.20.002998
ORF1ab/nsp12613H613HcaCcaT55B.1.5250.000566
ORF1ab/nsp12613H613HcaCcaT55C.180.012953
ORF1ab/nsp12613H613HcaCcaT44A0.001548
ORF1ab/nsp12613H613HcaCcaT44AY.1210.000541
ORF1ab/nsp12613H613HcaCcaT44AY.330.000267
ORF1ab/nsp12613H613HcaCcaT44AY.520.003257
ORF1ab/nsp12613H613HcaCcaT44AY.610.000419
ORF1ab/nsp12613H613HcaCcaT44B.1.1.100.004459
ORF1ab/nsp12613H613HcaCcaT44B.1.1.2940.005063
ORF1ab/nsp12613H613HcaCcaT44B.1.1.5230.00625
ORF1ab/nsp12613H613HcaCcaT44B.1.1.700.001364
ORF1ab/nsp12613H613HcaCcaT44B.1.1570.01194
ORF1ab/nsp12613H613HcaCcaT44B.1.177.170.003284
ORF1ab/nsp12613H613HcaCcaT44B.1.177.310.045977
ORF1ab/nsp12613H613HcaCcaT44B.1.177.320.005398
ORF1ab/nsp12613H613HcaCcaT44B.1.2140.014652
ORF1ab/nsp12613H613HcaCcaT44B.1.36.80.004
ORF1ab/nsp12613H613HcaCcaT44B.1.5640.001704
ORF1ab/nsp12613H613HcaCcaT44B.1.5750.001214
ORF1ab/nsp12613H613HcaCcaT44C.160.004242
ORF1ab/nsp12613H613HcaCcaT44P.1.100.001078
ORF1ab/nsp12613H613HcaCcaT33AH.30.011407
ORF1ab/nsp12613H613HcaCcaT33AY.1190.000106
ORF1ab/nsp12613H613HcaCcaT33AY.270.000194
ORF1ab/nsp12613H613HcaCcaT33AY.360.000445
ORF1ab/nsp12613H613HcaCcaT33AY.450.000365
ORF1ab/nsp12613H613HcaCcaT33AY.50.000062
ORF1ab/nsp12613H613HcaCcaT33AY.680.000821
ORF1ab/nsp12613H613HcaCcaT33AY.9.10.000251
ORF1ab/nsp12613H613HcaCcaT33B.1.1.2050.011152
ORF1ab/nsp12613H613HcaCcaT33B.1.1.3560.025641
ORF1ab/nsp12613H613HcaCcaT33B.1.1.3720.002066
ORF1ab/nsp12613H613HcaCcaT33B.1.177.120.000455
ORF1ab/nsp12613H613HcaCcaT33B.1.177.410.0075
ORF1ab/nsp12613H613HcaCcaT33B.1.2370.014925
ORF1ab/nsp12613H613HcaCcaT33B.1.2430.000209
ORF1ab/nsp12613H613HcaCcaT33B.1.3490.002144
ORF1ab/nsp12613H613HcaCcaT33B.1.3670.002377
ORF1ab/nsp12613H613HcaCcaT33B.1.3960.002117
ORF1ab/nsp12613H613HcaCcaT33B.1.4620.021739
ORF1ab/nsp12613H613HcaCcaT33B.1.5800.012195
ORF1ab/nsp12613H613HcaCcaT33B.1.5900.013636
ORF1ab/nsp12613H613HcaCcaT33B.1.6210.000266
ORF1ab/nsp12613H613HcaCcaT33P.1.70.000958
ORF1ab/nsp12613H613HcaCcaT22AD.20.000438
ORF1ab/nsp12613H613HcaCcaT22AY.1080.002205
ORF1ab/nsp12613H613HcaCcaT22AY.1130.000285
ORF1ab/nsp12613H613HcaCcaT22AY.1180.000125
ORF1ab/nsp12613H613HcaCcaT22AY.140.000176
ORF1ab/nsp12613H613HcaCcaT22AY.160.000759
ORF1ab/nsp12613H613HcaCcaT22AY.23.10.000835
ORF1ab/nsp12613H613HcaCcaT22AY.350.000466
ORF1ab/nsp12613H613HcaCcaT22AY.4.20.000043
ORF1ab/nsp12613H613HcaCcaT22AY.46.40.000329
ORF1ab/nsp12613H613HcaCcaT22AY.530.000575
ORF1ab/nsp12613H613HcaCcaT22AY.590.001059
ORF1ab/nsp12613H613HcaCcaT22AY.660.002139
ORF1ab/nsp12613H613HcaCcaT22AY.670.000929
ORF1ab/nsp12613H613HcaCcaT22AY.75.10.000361
ORF1ab/nsp12613H613HcaCcaT22AY.840.000875
ORF1ab/nsp12613H613HcaCcaT22AY.850.000854
ORF1ab/nsp12613H613HcaCcaT22AY.880.001768
ORF1ab/nsp12613H613HcaCcaT22AY.9.20.000073
ORF1ab/nsp12613H613HcaCcaT22AY.930.000546
ORF1ab/nsp12613H613HcaCcaT22AZ.20.001642
ORF1ab/nsp12613H613HcaCcaT22B.1.1.1710.007353
ORF1ab/nsp12613H613HcaCcaT22B.1.1.2090.017857
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3060.000877
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3170.000823
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3180.000604
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3260.003521
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3700.025316
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3740.004751
ORF1ab/nsp12613H613HcaCcaT22B.1.1.4170.005405
ORF1ab/nsp12613H613HcaCcaT22B.1.1.5240.041667
ORF1ab/nsp12613H613HcaCcaT22B.1.1.5250.010929
ORF1ab/nsp12613H613HcaCcaT22B.1.160.160.001859
ORF1ab/nsp12613H613HcaCcaT22B.1.177.330.003289
ORF1ab/nsp12613H613HcaCcaT22B.1.177.500.00939
ORF1ab/nsp12613H613HcaCcaT22B.1.177.630.005405
ORF1ab/nsp12613H613HcaCcaT22B.1.214.30.014286
ORF1ab/nsp12613H613HcaCcaT22B.1.258.140.001961
ORF1ab/nsp12613H613HcaCcaT22B.1.351.50.001199
ORF1ab/nsp12613H613HcaCcaT22B.1.3620.003082
ORF1ab/nsp12613H613HcaCcaT22B.1.5170.000854
ORF1ab/nsp12613H613HcaCcaT22B.1.5240.002813
ORF1ab/nsp12613H613HcaCcaT22B.1.5300.014286
ORF1ab/nsp12613H613HcaCcaT22B.1.5330.019231
ORF1ab/nsp12613H613HcaCcaT22B.1.5610.000794
ORF1ab/nsp12613H613HcaCcaT22B.1.5990.007299
ORF1ab/nsp12613H613HcaCcaT22B.1.617.30.00597
ORF1ab/nsp12613H613HcaCcaT22B.1.6200.001892
ORF1ab/nsp12613H613HcaCcaT22B.1.621.10.001012
ORF1ab/nsp12613H613HcaCcaT22B.1.6250.004706
ORF1ab/nsp12613H613HcaCcaT22B.1.6280.000705
ORF1ab/nsp12613H613HcaCcaT22B.1.6330.083333
ORF1ab/nsp12613H613HcaCcaT22P.1.130.001797
ORF1ab/nsp12613H613HcaCcaT11A.2.40.003367
ORF1ab/nsp12613H613HcaCcaT11A.270.001656
ORF1ab/nsp12613H613HcaCcaT11A.30.002096
ORF1ab/nsp12613H613HcaCcaT11A.70.055556
ORF1ab/nsp12613H613HcaCcaT11AY.1010.00049
ORF1ab/nsp12613H613HcaCcaT11AY.1100.000113
ORF1ab/nsp12613H613HcaCcaT11AY.1160.000287
ORF1ab/nsp12613H613HcaCcaT11AY.1170.000085
ORF1ab/nsp12613H613HcaCcaT11AY.1200.000037
ORF1ab/nsp12613H613HcaCcaT11AY.130.000161
ORF1ab/nsp12613H613HcaCcaT11AY.20.000356
ORF1ab/nsp12613H613HcaCcaT11AY.230.00007
ORF1ab/nsp12613H613HcaCcaT11AY.29.10.000221
ORF1ab/nsp12613H613HcaCcaT11AY.39.20.001541
ORF1ab/nsp12613H613HcaCcaT11AY.4.2.10.000149
ORF1ab/nsp12613H613HcaCcaT11AY.4.30.000842
ORF1ab/nsp12613H613HcaCcaT11AY.4.50.000107
ORF1ab/nsp12613H613HcaCcaT11AY.460.000104
ORF1ab/nsp12613H613HcaCcaT11AY.46.10.001027
ORF1ab/nsp12613H613HcaCcaT11AY.5.40.000277
ORF1ab/nsp12613H613HcaCcaT11AY.500.000799
ORF1ab/nsp12613H613HcaCcaT11AY.60.000041
ORF1ab/nsp12613H613HcaCcaT11AY.630.000387
ORF1ab/nsp12613H613HcaCcaT11AY.690.000187
ORF1ab/nsp12613H613HcaCcaT11AY.7.10.000113
ORF1ab/nsp12613H613HcaCcaT11AY.780.001541
ORF1ab/nsp12613H613HcaCcaT11AY.820.001357
ORF1ab/nsp12613H613HcaCcaT11AY.90.000068
ORF1ab/nsp12613H613HcaCcaT11AY.98.10.000048
ORF1ab/nsp12613H613HcaCcaT11B.1.1.10.000327
ORF1ab/nsp12613H613HcaCcaT11B.1.1.1700.001247
ORF1ab/nsp12613H613HcaCcaT11B.1.1.1890.001513
ORF1ab/nsp12613H613HcaCcaT11B.1.1.1980.001468
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2310.003096
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2360.006897
ORF1ab/nsp12613H613HcaCcaT11B.1.1.250.000569
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2540.011236
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2650.003155
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2690.001353
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2770.000759
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2910.000742
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3010.001179
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3280.016949
ORF1ab/nsp12613H613HcaCcaT11B.1.1.330.000421
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3480.000796
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3970.002252
ORF1ab/nsp12613H613HcaCcaT11B.1.1.4370.010417
ORF1ab/nsp12613H613HcaCcaT11B.1.1.4620.008621
ORF1ab/nsp12613H613HcaCcaT11B.1.1.4640.001473
ORF1ab/nsp12613H613HcaCcaT11B.1.1.5260.003546
ORF1ab/nsp12613H613HcaCcaT11B.1.1.990.02381
ORF1ab/nsp12613H613HcaCcaT11B.1.160.310.008065
ORF1ab/nsp12613H613HcaCcaT11B.1.160.70.002079
ORF1ab/nsp12613H613HcaCcaT11B.1.1700.00431
ORF1ab/nsp12613H613HcaCcaT11B.1.177.150.000631
ORF1ab/nsp12613H613HcaCcaT11B.1.177.160.000664
ORF1ab/nsp12613H613HcaCcaT11B.1.177.210.000076
ORF1ab/nsp12613H613HcaCcaT11B.1.177.40.000211
ORF1ab/nsp12613H613HcaCcaT11B.1.177.440.000519
ORF1ab/nsp12613H613HcaCcaT11B.1.177.510.004566
ORF1ab/nsp12613H613HcaCcaT11B.1.177.560.000668
ORF1ab/nsp12613H613HcaCcaT11B.1.177.60.000977
ORF1ab/nsp12613H613HcaCcaT11B.1.177.600.000218
ORF1ab/nsp12613H613HcaCcaT11B.1.2340.000132
ORF1ab/nsp12613H613HcaCcaT11B.1.2390.001221
ORF1ab/nsp12613H613HcaCcaT11B.1.258.110.000396
ORF1ab/nsp12613H613HcaCcaT11B.1.2600.003344
ORF1ab/nsp12613H613HcaCcaT11B.1.3010.005917
ORF1ab/nsp12613H613HcaCcaT11B.1.3200.001245
ORF1ab/nsp12613H613HcaCcaT11B.1.3240.001605
ORF1ab/nsp12613H613HcaCcaT11B.1.3360.002439
ORF1ab/nsp12613H613HcaCcaT11B.1.351.30.000876
ORF1ab/nsp12613H613HcaCcaT11B.1.36.10.00114
ORF1ab/nsp12613H613HcaCcaT11B.1.36.100.004785
ORF1ab/nsp12613H613HcaCcaT11B.1.36.170.000494
ORF1ab/nsp12613H613HcaCcaT11B.1.36.240.006173
ORF1ab/nsp12613H613HcaCcaT11B.1.3690.000285
ORF1ab/nsp12613H613HcaCcaT11B.1.3800.006623
ORF1ab/nsp12613H613HcaCcaT11B.1.3930.028571
ORF1ab/nsp12613H613HcaCcaT11B.1.3970.004854
ORF1ab/nsp12613H613HcaCcaT11B.1.4000.000429
ORF1ab/nsp12613H613HcaCcaT11B.1.4160.001269
ORF1ab/nsp12613H613HcaCcaT11B.1.4170.028571
ORF1ab/nsp12613H613HcaCcaT11B.1.4320.011236
ORF1ab/nsp12613H613HcaCcaT11B.1.438.10.000107
ORF1ab/nsp12613H613HcaCcaT11B.1.4560.003268
ORF1ab/nsp12613H613HcaCcaT11B.1.466.20.000391
ORF1ab/nsp12613H613HcaCcaT11B.1.4680.005714
ORF1ab/nsp12613H613HcaCcaT11B.1.4700.001404
ORF1ab/nsp12613H613HcaCcaT11B.1.4730.019231
ORF1ab/nsp12613H613HcaCcaT11B.1.5100.026316
ORF1ab/nsp12613H613HcaCcaT11B.1.5380.008065
ORF1ab/nsp12613H613HcaCcaT11B.1.5770.000687
ORF1ab/nsp12613H613HcaCcaT11B.1.5820.000491
ORF1ab/nsp12613H613HcaCcaT11B.1.6060.006024
ORF1ab/nsp12613H613HcaCcaT11B.1.6270.00202
ORF1ab/nsp12613H613HcaCcaT11B.1.6340.003425
ORF1ab/nsp12613H613HcaCcaT11B.1.6360.006711
ORF1ab/nsp12613H613HcaCcaT11B.1.940.027027
ORF1ab/nsp12613H613HcaCcaT11B.350.007812
ORF1ab/nsp12613H613HcaCcaT11B.60.00091
ORF1ab/nsp12613H613HcaCcaT11B.6.60.000889
ORF1ab/nsp12613H613HcaCcaT11P.1.10.10.00813
ORF1ab/nsp12613H613HcaCcaT11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.