CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = H599H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12599H599HH4991HsyncaCcaT3145931459115235-15237

Details of the mutation H599H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12599H599HcaCcaT3145931459All0.006017
ORF1ab/nsp12599H599HcaCcaT2095520955AY.420.843022
ORF1ab/nsp12599H599HcaCcaT33093309AY.40.00515
ORF1ab/nsp12599H599HcaCcaT12591259B.1.1.70.001127
ORF1ab/nsp12599H599HcaCcaT11511151B.1.20.010135
ORF1ab/nsp12599H599HcaCcaT610610AY.1030.003788
ORF1ab/nsp12599H599HcaCcaT540540B.1.617.20.002033
ORF1ab/nsp12599H599HcaCcaT328328B.1.1770.004319
ORF1ab/nsp12599H599HcaCcaT228228AY.430.00101
ORF1ab/nsp12599H599HcaCcaT203203B.1.1.1590.948598
ORF1ab/nsp12599H599HcaCcaT197197AY.440.001199
ORF1ab/nsp12599H599HcaCcaT166166B.1.6280.058492
ORF1ab/nsp12599H599HcaCcaT155155B.1.10.002812
ORF1ab/nsp12599H599HcaCcaT129129AY.790.156174
ORF1ab/nsp12599H599HcaCcaT101101B.10.000925
ORF1ab/nsp12599H599HcaCcaT9898B.1.5260.002303
ORF1ab/nsp12599H599HcaCcaT9292AY.250.000553
ORF1ab/nsp12599H599HcaCcaT8686B.1.5960.007494
ORF1ab/nsp12599H599HcaCcaT8181AY.30.000806
ORF1ab/nsp12599H599HcaCcaT6464AY.1200.002379
ORF1ab/nsp12599H599HcaCcaT6464P.10.001008
ORF1ab/nsp12599H599HcaCcaT6161AY.50.00126
ORF1ab/nsp12599H599HcaCcaT5353AY.390.00131
ORF1ab/nsp12599H599HcaCcaT5151AY.46.20.032402
ORF1ab/nsp12599H599HcaCcaT4444B.1.2210.003125
ORF1ab/nsp12599H599HcaCcaT4343B.1.2580.002862
ORF1ab/nsp12599H599HcaCcaT3939B.1.1.5190.001549
ORF1ab/nsp12599H599HcaCcaT3737B.1.1.2140.002052
ORF1ab/nsp12599H599HcaCcaT3232AY.290.000505
ORF1ab/nsp12599H599HcaCcaT3232B.1.1.3740.07601
ORF1ab/nsp12599H599HcaCcaT3131AY.610.003248
ORF1ab/nsp12599H599HcaCcaT2626AY.900.017796
ORF1ab/nsp12599H599HcaCcaT2626B.1.1.4320.032911
ORF1ab/nsp12599H599HcaCcaT2424AY.260.000679
ORF1ab/nsp12599H599HcaCcaT2323B.1.1600.000717
ORF1ab/nsp12599H599HcaCcaT2222AY.460.00229
ORF1ab/nsp12599H599HcaCcaT2222B.1.177.120.003337
ORF1ab/nsp12599H599HcaCcaT2121AY.1170.001775
ORF1ab/nsp12599H599HcaCcaT2121AY.4.20.000455
ORF1ab/nsp12599H599HcaCcaT2121B.1.1.2690.028417
ORF1ab/nsp12599H599HcaCcaT2121B.1.4290.000494
ORF1ab/nsp12599H599HcaCcaT2121B.1.5250.002376
ORF1ab/nsp12599H599HcaCcaT2020B.1.258.170.002079
ORF1ab/nsp12599H599HcaCcaT1919AY.46.60.001372
ORF1ab/nsp12599H599HcaCcaT1919B.1.6210.001682
ORF1ab/nsp12599H599HcaCcaT1919B.1.6370.001388
ORF1ab/nsp12599H599HcaCcaT1919P.1.10.006036
ORF1ab/nsp12599H599HcaCcaT1717AY.1000.000782
ORF1ab/nsp12599H599HcaCcaT1616B.1.177.600.003495
ORF1ab/nsp12599H599HcaCcaT1616B.1.3510.000476
ORF1ab/nsp12599H599HcaCcaT1616B.1.4710.043716
ORF1ab/nsp12599H599HcaCcaT1616B.1.5750.004854
ORF1ab/nsp12599H599HcaCcaT1616P.20.002986
ORF1ab/nsp12599H599HcaCcaT1515AY.1210.00203
ORF1ab/nsp12599H599HcaCcaT1515AY.99.20.001382
ORF1ab/nsp12599H599HcaCcaT1414AY.3.10.001194
ORF1ab/nsp12599H599HcaCcaT1313AY.116.10.004049
ORF1ab/nsp12599H599HcaCcaT1313B.1.177.40.002744
ORF1ab/nsp12599H599HcaCcaT1313B.1.5510.016774
ORF1ab/nsp12599H599HcaCcaT1212AY.340.001164
ORF1ab/nsp12599H599HcaCcaT1212B.1.1.2160.010686
ORF1ab/nsp12599H599HcaCcaT1212B.1.1.4060.077922
ORF1ab/nsp12599H599HcaCcaT1111AY.230.000767
ORF1ab/nsp12599H599HcaCcaT1111AY.470.000342
ORF1ab/nsp12599H599HcaCcaT1111B.1.2400.002371
ORF1ab/nsp12599H599HcaCcaT1010AY.1020.000265
ORF1ab/nsp12599H599HcaCcaT1010AY.1060.003349
ORF1ab/nsp12599H599HcaCcaT1010B.1.3110.002746
ORF1ab/nsp12599H599HcaCcaT1010B.1.36.290.005173
ORF1ab/nsp12599H599HcaCcaT99AY.98.10.000436
ORF1ab/nsp12599H599HcaCcaT99B.1.1.280.002801
ORF1ab/nsp12599H599HcaCcaT99C.370.001045
ORF1ab/nsp12599H599HcaCcaT88AY.330.000534
ORF1ab/nsp12599H599HcaCcaT88AY.750.000448
ORF1ab/nsp12599H599HcaCcaT88AY.980.000632
ORF1ab/nsp12599H599HcaCcaT88B.1.1.3060.003507
ORF1ab/nsp12599H599HcaCcaT88B.1.1.3370.028777
ORF1ab/nsp12599H599HcaCcaT88B.1.177.860.001468
ORF1ab/nsp12599H599HcaCcaT88B.1.214.30.057143
ORF1ab/nsp12599H599HcaCcaT88B.1.36.380.013136
ORF1ab/nsp12599H599HcaCcaT88Q.10.001011
ORF1ab/nsp12599H599HcaCcaT88Q.40.003638
ORF1ab/nsp12599H599HcaCcaT88Q.80.001319
ORF1ab/nsp12599H599HcaCcaT77AY.1180.000439
ORF1ab/nsp12599H599HcaCcaT77AY.450.000852
ORF1ab/nsp12599H599HcaCcaT77AY.550.006422
ORF1ab/nsp12599H599HcaCcaT77AY.9.20.000257
ORF1ab/nsp12599H599HcaCcaT77B.1.3490.005004
ORF1ab/nsp12599H599HcaCcaT77P.1.140.000335
ORF1ab/nsp12599H599HcaCcaT77Q.30.001015
ORF1ab/nsp12599H599HcaCcaT66AY.1190.000212
ORF1ab/nsp12599H599HcaCcaT66AY.120.2.10.00299
ORF1ab/nsp12599H599HcaCcaT66AY.200.000233
ORF1ab/nsp12599H599HcaCcaT66AY.300.002374
ORF1ab/nsp12599H599HcaCcaT66B.1.1.390.003058
ORF1ab/nsp12599H599HcaCcaT66B.1.177.320.008097
ORF1ab/nsp12599H599HcaCcaT66B.1.360.000875
ORF1ab/nsp12599H599HcaCcaT66B.1.36.80.006
ORF1ab/nsp12599H599HcaCcaT66B.1.4160.007614
ORF1ab/nsp12599H599HcaCcaT66B.1.4270.000303
ORF1ab/nsp12599H599HcaCcaT66B.1.930.005602
ORF1ab/nsp12599H599HcaCcaT55AY.1130.000712
ORF1ab/nsp12599H599HcaCcaT55AY.380.002496
ORF1ab/nsp12599H599HcaCcaT55AY.39.10.000198
ORF1ab/nsp12599H599HcaCcaT55AY.46.40.000823
ORF1ab/nsp12599H599HcaCcaT55AY.870.004163
ORF1ab/nsp12599H599HcaCcaT55B0.000639
ORF1ab/nsp12599H599HcaCcaT55B.1.1.500.003394
ORF1ab/nsp12599H599HcaCcaT55B.1.160.80.006443
ORF1ab/nsp12599H599HcaCcaT55B.1.2430.000348
ORF1ab/nsp12599H599HcaCcaT55B.1.3690.001426
ORF1ab/nsp12599H599HcaCcaT55P.1.150.001162
ORF1ab/nsp12599H599HcaCcaT55P.1.170.000809
ORF1ab/nsp12599H599HcaCcaT55R.10.00045
ORF1ab/nsp12599H599HcaCcaT44A.2.5.20.006289
ORF1ab/nsp12599H599HcaCcaT44AY.120.20.005141
ORF1ab/nsp12599H599HcaCcaT44AY.23.10.001669
ORF1ab/nsp12599H599HcaCcaT44AY.7.10.000451
ORF1ab/nsp12599H599HcaCcaT44AY.99.10.006211
ORF1ab/nsp12599H599HcaCcaT44B.1.1.2070.004728
ORF1ab/nsp12599H599HcaCcaT44B.1.1.3390.042105
ORF1ab/nsp12599H599HcaCcaT44B.1.1.370.000771
ORF1ab/nsp12599H599HcaCcaT44B.1.575.10.009756
ORF1ab/nsp12599H599HcaCcaT44B.1.5950.001044
ORF1ab/nsp12599H599HcaCcaT44B.1.617.10.000516
ORF1ab/nsp12599H599HcaCcaT33A.23.10.002113
ORF1ab/nsp12599H599HcaCcaT33AY.1110.000549
ORF1ab/nsp12599H599HcaCcaT33AY.16.10.00141
ORF1ab/nsp12599H599HcaCcaT33AY.34.10.00153
ORF1ab/nsp12599H599HcaCcaT33AY.4.50.000322
ORF1ab/nsp12599H599HcaCcaT33AY.570.001969
ORF1ab/nsp12599H599HcaCcaT33AY.60.000123
ORF1ab/nsp12599H599HcaCcaT33AY.9.10.000251
ORF1ab/nsp12599H599HcaCcaT33AY.920.000862
ORF1ab/nsp12599H599HcaCcaT33B.1.1.1890.004539
ORF1ab/nsp12599H599HcaCcaT33B.1.1.2430.012245
ORF1ab/nsp12599H599HcaCcaT33B.1.1.250.001706
ORF1ab/nsp12599H599HcaCcaT33B.1.1.3330.003229
ORF1ab/nsp12599H599HcaCcaT33B.1.1.4870.01676
ORF1ab/nsp12599H599HcaCcaT33B.1.177.210.000229
ORF1ab/nsp12599H599HcaCcaT33B.1.2340.000396
ORF1ab/nsp12599H599HcaCcaT33B.1.2500.043478
ORF1ab/nsp12599H599HcaCcaT33B.1.3970.014563
ORF1ab/nsp12599H599HcaCcaT33B.1.4000.001287
ORF1ab/nsp12599H599HcaCcaT33B.1.6090.001438
ORF1ab/nsp12599H599HcaCcaT33C.360.002732
ORF1ab/nsp12599H599HcaCcaT33D.20.000225
ORF1ab/nsp12599H599HcaCcaT22AU.30.004219
ORF1ab/nsp12599H599HcaCcaT22AY.10.000791
ORF1ab/nsp12599H599HcaCcaT22AY.1100.000225
ORF1ab/nsp12599H599HcaCcaT22AY.240.000862
ORF1ab/nsp12599H599HcaCcaT22AY.320.001065
ORF1ab/nsp12599H599HcaCcaT22AY.4.2.10.000298
ORF1ab/nsp12599H599HcaCcaT22AY.530.000575
ORF1ab/nsp12599H599HcaCcaT22AY.540.000191
ORF1ab/nsp12599H599HcaCcaT22AY.580.001815
ORF1ab/nsp12599H599HcaCcaT22AY.590.001059
ORF1ab/nsp12599H599HcaCcaT22AY.700.000417
ORF1ab/nsp12599H599HcaCcaT22AY.710.00095
ORF1ab/nsp12599H599HcaCcaT22AY.730.001331
ORF1ab/nsp12599H599HcaCcaT22AY.90.000135
ORF1ab/nsp12599H599HcaCcaT22AY.910.001461
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2200.003717
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2630.003115
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2840.000215
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2910.001485
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3110.000716
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3120.003824
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3170.000823
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3770.002762
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3890.012121
ORF1ab/nsp12599H599HcaCcaT22B.1.1.4480.004065
ORF1ab/nsp12599H599HcaCcaT22B.1.1.460.008734
ORF1ab/nsp12599H599HcaCcaT22B.1.3290.001215
ORF1ab/nsp12599H599HcaCcaT22B.1.36.70.008
ORF1ab/nsp12599H599HcaCcaT22B.1.4330.00639
ORF1ab/nsp12599H599HcaCcaT22B.1.5650.001621
ORF1ab/nsp12599H599HcaCcaT22C.36.10.008299
ORF1ab/nsp12599H599HcaCcaT22P.1.160.000748
ORF1ab/nsp12599H599HcaCcaT22P.1.70.000639
ORF1ab/nsp12599H599HcaCcaT11A0.000387
ORF1ab/nsp12599H599HcaCcaT11A.10.000282
ORF1ab/nsp12599H599HcaCcaT11A.210.00277
ORF1ab/nsp12599H599HcaCcaT11A.30.002096
ORF1ab/nsp12599H599HcaCcaT11AD.20.000219
ORF1ab/nsp12599H599HcaCcaT11AL.10.012987
ORF1ab/nsp12599H599HcaCcaT11AY.1010.00049
ORF1ab/nsp12599H599HcaCcaT11AY.1050.000643
ORF1ab/nsp12599H599HcaCcaT11AY.1080.001103
ORF1ab/nsp12599H599HcaCcaT11AY.120.10.000321
ORF1ab/nsp12599H599HcaCcaT11AY.150.002222
ORF1ab/nsp12599H599HcaCcaT11AY.160.00038
ORF1ab/nsp12599H599HcaCcaT11AY.270.000065
ORF1ab/nsp12599H599HcaCcaT11AY.280.00189
ORF1ab/nsp12599H599HcaCcaT11AY.29.10.000221
ORF1ab/nsp12599H599HcaCcaT11AY.350.000233
ORF1ab/nsp12599H599HcaCcaT11AY.4.10.000737
ORF1ab/nsp12599H599HcaCcaT11AY.410.000294
ORF1ab/nsp12599H599HcaCcaT11AY.46.10.001027
ORF1ab/nsp12599H599HcaCcaT11AY.46.50.000198
ORF1ab/nsp12599H599HcaCcaT11AY.480.000465
ORF1ab/nsp12599H599HcaCcaT11AY.5.30.000337
ORF1ab/nsp12599H599HcaCcaT11AY.5.40.000277
ORF1ab/nsp12599H599HcaCcaT11AY.520.000814
ORF1ab/nsp12599H599HcaCcaT11AY.630.000387
ORF1ab/nsp12599H599HcaCcaT11AY.680.000274
ORF1ab/nsp12599H599HcaCcaT11AY.70.000196
ORF1ab/nsp12599H599HcaCcaT11AY.7.20.000559
ORF1ab/nsp12599H599HcaCcaT11AY.740.000116
ORF1ab/nsp12599H599HcaCcaT11AY.75.10.00018
ORF1ab/nsp12599H599HcaCcaT11AY.80.000606
ORF1ab/nsp12599H599HcaCcaT11AY.880.000884
ORF1ab/nsp12599H599HcaCcaT11AY.930.000273
ORF1ab/nsp12599H599HcaCcaT11AY.940.000443
ORF1ab/nsp12599H599HcaCcaT11AY.950.000761
ORF1ab/nsp12599H599HcaCcaT11AY.990.001049
ORF1ab/nsp12599H599HcaCcaT11B.1.1.10.000327
ORF1ab/nsp12599H599HcaCcaT11B.1.1.100.001115
ORF1ab/nsp12599H599HcaCcaT11B.1.1.1610.003534
ORF1ab/nsp12599H599HcaCcaT11B.1.1.1920.002309
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2220.000204
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2260.005814
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2310.003096
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2650.003155
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2890.002083
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2940.001266
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3010.001179
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3180.000302
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3260.001761
ORF1ab/nsp12599H599HcaCcaT11B.1.1.330.000421
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3470.018182
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3680.003086
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3700.012658
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4160.000905
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4200.001006
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4340.000349
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4490.022727
ORF1ab/nsp12599H599HcaCcaT11B.1.1.520.012195
ORF1ab/nsp12599H599HcaCcaT11B.1.1.5210.005348
ORF1ab/nsp12599H599HcaCcaT11B.1.110.30.000718
ORF1ab/nsp12599H599HcaCcaT11B.1.160.160.000929
ORF1ab/nsp12599H599HcaCcaT11B.1.177.110.001698
ORF1ab/nsp12599H599HcaCcaT11B.1.177.160.000664
ORF1ab/nsp12599H599HcaCcaT11B.1.177.350.000691
ORF1ab/nsp12599H599HcaCcaT11B.1.177.500.004695
ORF1ab/nsp12599H599HcaCcaT11B.1.177.520.001757
ORF1ab/nsp12599H599HcaCcaT11B.1.177.540.000606
ORF1ab/nsp12599H599HcaCcaT11B.1.177.70.000165
ORF1ab/nsp12599H599HcaCcaT11B.1.177.730.000566
ORF1ab/nsp12599H599HcaCcaT11B.1.177.800.001912
ORF1ab/nsp12599H599HcaCcaT11B.1.177.810.000189
ORF1ab/nsp12599H599HcaCcaT11B.1.177.830.001481
ORF1ab/nsp12599H599HcaCcaT11B.1.177.850.005435
ORF1ab/nsp12599H599HcaCcaT11B.1.2060.000816
ORF1ab/nsp12599H599HcaCcaT11B.1.2130.014925
ORF1ab/nsp12599H599HcaCcaT11B.1.2360.002053
ORF1ab/nsp12599H599HcaCcaT11B.1.2410.000812
ORF1ab/nsp12599H599HcaCcaT11B.1.258.40.003448
ORF1ab/nsp12599H599HcaCcaT11B.1.2600.003344
ORF1ab/nsp12599H599HcaCcaT11B.1.2650.001271
ORF1ab/nsp12599H599HcaCcaT11B.1.2790.000514
ORF1ab/nsp12599H599HcaCcaT11B.1.2980.002114
ORF1ab/nsp12599H599HcaCcaT11B.1.3460.001311
ORF1ab/nsp12599H599HcaCcaT11B.1.36.160.001425
ORF1ab/nsp12599H599HcaCcaT11B.1.36.170.000494
ORF1ab/nsp12599H599HcaCcaT11B.1.3600.012658
ORF1ab/nsp12599H599HcaCcaT11B.1.3620.001541
ORF1ab/nsp12599H599HcaCcaT11B.1.3750.00082
ORF1ab/nsp12599H599HcaCcaT11B.1.3810.007812
ORF1ab/nsp12599H599HcaCcaT11B.1.3890.001002
ORF1ab/nsp12599H599HcaCcaT11B.1.4040.001302
ORF1ab/nsp12599H599HcaCcaT11B.1.4250.002994
ORF1ab/nsp12599H599HcaCcaT11B.1.466.20.000391
ORF1ab/nsp12599H599HcaCcaT11B.1.4680.005714
ORF1ab/nsp12599H599HcaCcaT11B.1.4700.001404
ORF1ab/nsp12599H599HcaCcaT11B.1.4990.00105
ORF1ab/nsp12599H599HcaCcaT11B.1.5200.021739
ORF1ab/nsp12599H599HcaCcaT11B.1.5610.000397
ORF1ab/nsp12599H599HcaCcaT11B.1.5640.000426
ORF1ab/nsp12599H599HcaCcaT11B.1.5740.002151
ORF1ab/nsp12599H599HcaCcaT11B.1.5760.000907
ORF1ab/nsp12599H599HcaCcaT11B.1.5820.000491
ORF1ab/nsp12599H599HcaCcaT11B.1.5880.00091
ORF1ab/nsp12599H599HcaCcaT11B.1.6100.003546
ORF1ab/nsp12599H599HcaCcaT11B.1.6270.00202
ORF1ab/nsp12599H599HcaCcaT11B.1.90.006173
ORF1ab/nsp12599H599HcaCcaT11B.400.000364
ORF1ab/nsp12599H599HcaCcaT11B.6.60.000889
ORF1ab/nsp12599H599HcaCcaT11C.10.002392
ORF1ab/nsp12599H599HcaCcaT11C.160.00106
ORF1ab/nsp12599H599HcaCcaT11C.400.027778
ORF1ab/nsp12599H599HcaCcaT11N.50.001767
ORF1ab/nsp12599H599HcaCcaT11P.1.120.000484
ORF1ab/nsp12599H599HcaCcaT11P.30.001595
ORF1ab/nsp12599H599HcaCcaT11P.70.004367
ORF1ab/nsp12599H599HcaCcaT11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.