CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 683 | G683G | G5075G | syn | ggA | ggG | 1401 | 1365 | 0.974304 | 15487-15489 |
ORF1ab/nsp12 | 683 | G683G | G5075G | syn | ggA | ggC | 1401 | 22 | 0.0157031 | 15487-15489 |
ORF1ab/nsp12 | 683 | G683G | G5075G | syn | ggA | ggT | 1401 | 14 | 0.00999286 | 15487-15489 |
Details of the mutation G683G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1365 | 1401 | All | 0.000261 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 22 | 1401 | All | 0.000004 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 14 | 1401 | All | 0.000003 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 549 | 549 | B.1.2 | 0.004834 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 201 | 201 | B.1.1.351 | 0.561453 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 140 | 140 | AY.43 | 0.00062 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 93 | 98 | B.1.617.2 | 0.00035 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 3 | 98 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 2 | 98 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 85 | 85 | AY.5 | 0.001755 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 50 | 50 | AY.14 | 0.004401 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 32 | 33 | AY.103 | 0.000199 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 33 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 33 | 33 | AY.13 | 0.005312 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 17 | 20 | B.1 | 0.000156 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 2 | 20 | B.1 | 0.000018 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 20 | B.1 | 0.000009 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 13 | 19 | AY.4 | 0.00002 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 4 | 19 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 2 | 19 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 18 | 19 | B.1.1.7 | 0.000016 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 19 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 17 | 17 | AY.5.4 | 0.004704 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 8 | 11 | AY.44 | 0.000049 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 2 | 11 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 11 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 8 | 9 | B.1.429 | 0.000188 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 9 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 5 | 5 | 0.277778 | |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 2 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 1 | 2 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 2 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 2 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 683 | G683G | ggA | ggC | 1 | 1 | B.40 | 0.000364 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|