CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = G679G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12679G679GG5071GsynggAggT175012380.70742915475-15477
ORF1ab/nsp12679G679GG5071GsynggAggG17503640.20815475-15477
ORF1ab/nsp12679G679GG5071GsynggAggC17501480.084571415475-15477

Details of the mutation G679G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12679G679GggAggT12381750All0.000237
ORF1ab/nsp12679G679GggAggG3641750All0.00007
ORF1ab/nsp12679G679GggAggC1481750All0.000028
ORF1ab/nsp12679G679GggAggT987987B.1.3890.988978
ORF1ab/nsp12679G679GggAggT117117AY.200.004547
ORF1ab/nsp12679G679GggAggT95106B.10.00087
ORF1ab/nsp12679G679GggAggG8106B.10.000073
ORF1ab/nsp12679G679GggAggC3106B.10.000027
ORF1ab/nsp12679G679GggAggG6290B.1.1.70.000056
ORF1ab/nsp12679G679GggAggT1690B.1.1.70.000014
ORF1ab/nsp12679G679GggAggC1290B.1.1.70.000011
ORF1ab/nsp12679G679GggAggC6262B.1.177.440.032174
ORF1ab/nsp12679G679GggAggG5252B.1.1.580.27957
ORF1ab/nsp12679G679GggAggG4646B.1.1.280.014317
ORF1ab/nsp12679G679GggAggG3238B.1.20.000282
ORF1ab/nsp12679G679GggAggC638B.1.20.000053
ORF1ab/nsp12679G679GggAggG2025P.10.000315
ORF1ab/nsp12679G679GggAggC425P.10.000063
ORF1ab/nsp12679G679GggAggT125P.10.000016
ORF1ab/nsp12679G679GggAggC1121B.1.617.20.000041
ORF1ab/nsp12679G679GggAggG921B.1.617.20.000034
ORF1ab/nsp12679G679GggAggT121B.1.617.20.000004
ORF1ab/nsp12679G679GggAggG1320AY.40.00002
ORF1ab/nsp12679G679GggAggC620AY.40.000009
ORF1ab/nsp12679G679GggAggT120AY.40.000002
ORF1ab/nsp12679G679GggAggG1819AY.440.00011
ORF1ab/nsp12679G679GggAggC119AY.440.000006
ORF1ab/nsp12679G679GggAggG1414B.1.1.1760.006151
ORF1ab/nsp12679G679GggAggC912AY.230.000628
ORF1ab/nsp12679G679GggAggG312AY.230.000209
ORF1ab/nsp12679G679GggAggC711B.1.1770.000092
ORF1ab/nsp12679G679GggAggT411B.1.1770.000053
ORF1ab/nsp12679G679GggAggG58AY.30.00005
ORF1ab/nsp12679G679GggAggT38AY.30.00003
ORF1ab/nsp12679G679GggAggG88B.1.1.5190.000318
ORF1ab/nsp12679G679GggAggC77AA.70.06422
ORF1ab/nsp12679G679GggAggG46AY.1020.000106
ORF1ab/nsp12679G679GggAggC16AY.1020.000027
ORF1ab/nsp12679G679GggAggT16AY.1020.000027
ORF1ab/nsp12679G679GggAggG66AY.1030.000037
ORF1ab/nsp12679G679GggAggT66AY.260.00017
ORF1ab/nsp12679G679GggAggG45AY.240.001724
ORF1ab/nsp12679G679GggAggC15AY.240.000431
ORF1ab/nsp12679G679GggAggG55B.1.1.5250.027322
ORF1ab/nsp12679G679GggAggG35B.1.2580.0002
ORF1ab/nsp12679G679GggAggC25B.1.2580.000133
ORF1ab/nsp12679G679GggAggG44B.1.360.000584
ORF1ab/nsp12679G679GggAggG33AY.250.000018
ORF1ab/nsp12679G679GggAggG23AY.430.000009
ORF1ab/nsp12679G679GggAggC13AY.430.000004
ORF1ab/nsp12679G679GggAggG33AY.50.000062
ORF1ab/nsp12679G679GggAggG23B.1.10.000036
ORF1ab/nsp12679G679GggAggC13B.1.10.000018
ORF1ab/nsp12679G679GggAggT120.055556
ORF1ab/nsp12679G679GggAggG120.055556
ORF1ab/nsp12679G679GggAggG22AY.340.000194
ORF1ab/nsp12679G679GggAggC12AY.390.000025
ORF1ab/nsp12679G679GggAggG12AY.390.000025
ORF1ab/nsp12679G679GggAggG12AY.4.20.000022
ORF1ab/nsp12679G679GggAggT12AY.4.20.000022
ORF1ab/nsp12679G679GggAggC22AY.400.001929
ORF1ab/nsp12679G679GggAggC22AY.600.001876
ORF1ab/nsp12679G679GggAggG22AY.750.000112
ORF1ab/nsp12679G679GggAggG22B.1.1.2050.007435
ORF1ab/nsp12679G679GggAggT22B.1.1.2140.000111
ORF1ab/nsp12679G679GggAggG22B.1.3510.000059
ORF1ab/nsp12679G679GggAggC12B.1.5240.001406
ORF1ab/nsp12679G679GggAggG12B.1.5240.001406
ORF1ab/nsp12679G679GggAggG22B.530.023529
ORF1ab/nsp12679G679GggAggG22B.60.00182
ORF1ab/nsp12679G679GggAggT11A.20.000662
ORF1ab/nsp12679G679GggAggG11AU.20.002421
ORF1ab/nsp12679G679GggAggG11AY.1110.000183
ORF1ab/nsp12679G679GggAggG11AY.20.000356
ORF1ab/nsp12679G679GggAggC11AY.420.00004
ORF1ab/nsp12679G679GggAggG11AY.46.40.000165
ORF1ab/nsp12679G679GggAggG11AY.470.000031
ORF1ab/nsp12679G679GggAggG11AY.560.001605
ORF1ab/nsp12679G679GggAggC11AY.670.000464
ORF1ab/nsp12679G679GggAggG11AY.98.10.000048
ORF1ab/nsp12679G679GggAggC11AY.99.20.000092
ORF1ab/nsp12679G679GggAggC11B0.000128
ORF1ab/nsp12679G679GggAggG11B.1.1.1210.002427
ORF1ab/nsp12679G679GggAggG11B.1.1.1530.001095
ORF1ab/nsp12679G679GggAggC11B.1.1.1610.003534
ORF1ab/nsp12679G679GggAggG11B.1.1.2770.000759
ORF1ab/nsp12679G679GggAggG11B.1.1.3710.010417
ORF1ab/nsp12679G679GggAggG11B.1.1600.000031
ORF1ab/nsp12679G679GggAggG11B.1.177.690.001484
ORF1ab/nsp12679G679GggAggC11B.1.177.730.000566
ORF1ab/nsp12679G679GggAggG11B.1.221.30.000833
ORF1ab/nsp12679G679GggAggG11B.1.2340.000132
ORF1ab/nsp12679G679GggAggG11B.1.2400.000216
ORF1ab/nsp12679G679GggAggG11B.1.2430.00007
ORF1ab/nsp12679G679GggAggG11B.1.36.290.000517
ORF1ab/nsp12679G679GggAggC11B.1.4730.019231
ORF1ab/nsp12679G679GggAggG11B.1.5820.000491
ORF1ab/nsp12679G679GggAggG11B.1.6090.000479
ORF1ab/nsp12679G679GggAggC11B.1.617.10.000129
ORF1ab/nsp12679G679GggAggG11B.1.6210.000089
ORF1ab/nsp12679G679GggAggT11P.1.140.000048
ORF1ab/nsp12679G679GggAggG11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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