CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = G137G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12137G137GG4529GsynggTggC302930200.99702913849-13851
ORF1ab/nsp12137G137GG4529GsynggTggG302950.0016507113849-13851
ORF1ab/nsp12137G137GG4529GsynggTggA302940.0013205713849-13851

Details of the mutation G137G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12137G137GggTggC30203029All0.000578
ORF1ab/nsp12137G137GggTggG53029All0.000001
ORF1ab/nsp12137G137GggTggA43029All0.000001
ORF1ab/nsp12137G137GggTggC28812881P.1.10.915184
ORF1ab/nsp12137G137GggTggC4344B.1.1.70.000038
ORF1ab/nsp12137G137GggTggA144B.1.1.70.000001
ORF1ab/nsp12137G137GggTggC1616AS.20.25
ORF1ab/nsp12137G137GggTggC1212P.10.000189
ORF1ab/nsp12137G137GggTggC88B.10.000073
ORF1ab/nsp12137G137GggTggC77AY.250.000042
ORF1ab/nsp12137G137GggTggC77B.1.2210.000497
ORF1ab/nsp12137G137GggTggC55AY.4.40.002046
ORF1ab/nsp12137G137GggTggC45B.1.10.000073
ORF1ab/nsp12137G137GggTggG15B.1.10.000018
ORF1ab/nsp12137G137GggTggG440.222222
ORF1ab/nsp12137G137GggTggC33AY.330.0002
ORF1ab/nsp12137G137GggTggC33AY.470.000093
ORF1ab/nsp12137G137GggTggC33B.1.617.20.000011
ORF1ab/nsp12137G137GggTggC22AY.120.2.10.000997
ORF1ab/nsp12137G137GggTggC22AY.390.000049
ORF1ab/nsp12137G137GggTggC22AY.40.000003
ORF1ab/nsp12137G137GggTggC22AY.98.10.000097
ORF1ab/nsp12137G137GggTggC22B.1.1770.000026
ORF1ab/nsp12137G137GggTggC22B.1.20.000018
ORF1ab/nsp12137G137GggTggC22B.1.3510.000059
ORF1ab/nsp12137G137GggTggC22B.1.5960.000174
ORF1ab/nsp12137G137GggTggC11A.10.000282
ORF1ab/nsp12137G137GggTggC11AY.30.00001
ORF1ab/nsp12137G137GggTggC11AY.420.00004
ORF1ab/nsp12137G137GggTggC11AY.440.000006
ORF1ab/nsp12137G137GggTggC11AY.610.000105
ORF1ab/nsp12137G137GggTggA11B0.000128
ORF1ab/nsp12137G137GggTggC11B.1.1.3740.002375
ORF1ab/nsp12137G137GggTggC11B.1.1.5190.00004
ORF1ab/nsp12137G137GggTggC11B.1.177.160.000664
ORF1ab/nsp12137G137GggTggA11B.1.177.440.000519
ORF1ab/nsp12137G137GggTggC11B.1.258.120.007874
ORF1ab/nsp12137G137GggTggC11B.1.3490.000715
ORF1ab/nsp12137G137GggTggC11B.1.5260.000024
ORF1ab/nsp12137G137GggTggC11B.1.6360.006711
ORF1ab/nsp12137G137GggTggA11B.340.013699

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.