CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 321 | F321F | F4713F | syn | ttC | ttT | 4147 | 4147 | 1 | 14401-14403 |
Details of the mutation F321F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 4147 | 4147 | All | 0.000793 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1559 | 1559 | B.1.619.1 | 1 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1115 | 1115 | B.1.619 | 0.971254 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 584 | 584 | B.1.526 | 0.013727 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 341 | 341 | AY.103 | 0.002117 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 97 | 97 | B.1.1.7 | 0.000087 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 37 | 37 | AY.113 | 0.005268 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 36 | 36 | AD.2 | 0.007883 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 33 | 33 | AY.121 | 0.004465 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 16 | 16 | B.1.258.7 | 0.030593 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 15 | 15 | B.1.617.1 | 0.001934 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 12 | 12 | B.1.320 | 0.014944 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 5 | 5 | B.1.221.3 | 0.004167 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 4 | 4 | B.1.1.117 | 0.038835 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 3 | 3 | B.1.160.30 | 0.008929 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 2 | 2 | U.1 | 0.025641 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.1.162 | 0.029412 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp12 | 321 | F321F | ttC | ttT | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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