CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = D499D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12499D499DD4891DsyngaCgaT51575157114935-14937

Details of the mutation D499D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12499D499DgaCgaT51575157All0.000986
ORF1ab/nsp12499D499DgaCgaT10971097B.1.1.70.000982
ORF1ab/nsp12499D499DgaCgaT593593AY.250.003567
ORF1ab/nsp12499D499DgaCgaT312312B.1.617.20.001175
ORF1ab/nsp12499D499DgaCgaT293293AY.40.000456
ORF1ab/nsp12499D499DgaCgaT292292B.1.10.005297
ORF1ab/nsp12499D499DgaCgaT284284B.1.1.3120.543021
ORF1ab/nsp12499D499DgaCgaT196196B.1.20.001726
ORF1ab/nsp12499D499DgaCgaT165165B.1.1.1381
ORF1ab/nsp12499D499DgaCgaT129129AY.1030.000801
ORF1ab/nsp12499D499DgaCgaT120120AY.430.000532
ORF1ab/nsp12499D499DgaCgaT113113P.10.00178
ORF1ab/nsp12499D499DgaCgaT101101B.1.1.2510.801587
ORF1ab/nsp12499D499DgaCgaT9292B.10.000843
ORF1ab/nsp12499D499DgaCgaT7575B.1.1600.002339
ORF1ab/nsp12499D499DgaCgaT7272B.1.1770.000948
ORF1ab/nsp12499D499DgaCgaT6262AY.440.000377
ORF1ab/nsp12499D499DgaCgaT5555P.1.100.014821
ORF1ab/nsp12499D499DgaCgaT5050AA.40.454545
ORF1ab/nsp12499D499DgaCgaT4646B.1.3510.001367
ORF1ab/nsp12499D499DgaCgaT3434AY.230.002371
ORF1ab/nsp12499D499DgaCgaT3434B.1.1.3060.014906
ORF1ab/nsp12499D499DgaCgaT3131AY.4.20.000672
ORF1ab/nsp12499D499DgaCgaT2727AY.1020.000716
ORF1ab/nsp12499D499DgaCgaT2727AY.50.000558
ORF1ab/nsp12499D499DgaCgaT2727P.1.40.026367
ORF1ab/nsp12499D499DgaCgaT2626AY.39.10.00103
ORF1ab/nsp12499D499DgaCgaT2525AY.610.002619
ORF1ab/nsp12499D499DgaCgaT2525B.1.2430.00174
ORF1ab/nsp12499D499DgaCgaT2525B.1.4270.001262
ORF1ab/nsp12499D499DgaCgaT2424B.1.438.10.002574
ORF1ab/nsp12499D499DgaCgaT2121B.130.954545
ORF1ab/nsp12499D499DgaCgaT2020AY.390.000494
ORF1ab/nsp12499D499DgaCgaT2020B.1.4290.000471
ORF1ab/nsp12499D499DgaCgaT1818B.1.177.180.020882
ORF1ab/nsp12499D499DgaCgaT1717AY.200.000661
ORF1ab/nsp12499D499DgaCgaT1717P.1.150.00395
ORF1ab/nsp12499D499DgaCgaT1616AY.1140.003698
ORF1ab/nsp12499D499DgaCgaT1616B.1.177.70.002638
ORF1ab/nsp12499D499DgaCgaT1515AY.290.000237
ORF1ab/nsp12499D499DgaCgaT1414AY.1000.000644
ORF1ab/nsp12499D499DgaCgaT1414AY.1180.000877
ORF1ab/nsp12499D499DgaCgaT1414AY.790.016949
ORF1ab/nsp12499D499DgaCgaT1313A.10.003664
ORF1ab/nsp12499D499DgaCgaT1313AY.30.000129
ORF1ab/nsp12499D499DgaCgaT1313B.1.1.2140.000721
ORF1ab/nsp12499D499DgaCgaT1313B.1.1580.309524
ORF1ab/nsp12499D499DgaCgaT1212B.1.1.280.003735
ORF1ab/nsp12499D499DgaCgaT1111AY.70.002156
ORF1ab/nsp12499D499DgaCgaT1111B.1.930.010271
ORF1ab/nsp12499D499DgaCgaT1111C.370.001277
ORF1ab/nsp12499D499DgaCgaT1010AY.23.10.004174
ORF1ab/nsp12499D499DgaCgaT99AY.1130.001282
ORF1ab/nsp12499D499DgaCgaT99AY.330.000601
ORF1ab/nsp12499D499DgaCgaT99B.1.6370.000658
ORF1ab/nsp12499D499DgaCgaT99P.1.140.00043
ORF1ab/nsp12499D499DgaCgaT99P.1.20.010405
ORF1ab/nsp12499D499DgaCgaT88AY.420.000322
ORF1ab/nsp12499D499DgaCgaT88B.1.1.5190.000318
ORF1ab/nsp12499D499DgaCgaT88Q.20.004908
ORF1ab/nsp12499D499DgaCgaT77AY.470.000218
ORF1ab/nsp12499D499DgaCgaT77AY.9.20.000257
ORF1ab/nsp12499D499DgaCgaT77B.1.36.360.004214
ORF1ab/nsp12499D499DgaCgaT77B.1.5250.000792
ORF1ab/nsp12499D499DgaCgaT77K.30.04321
ORF1ab/nsp12499D499DgaCgaT66AY.260.00017
ORF1ab/nsp12499D499DgaCgaT66AY.270.000388
ORF1ab/nsp12499D499DgaCgaT66AY.750.000336
ORF1ab/nsp12499D499DgaCgaT66B.1.2580.000399
ORF1ab/nsp12499D499DgaCgaT66B.1.360.000875
ORF1ab/nsp12499D499DgaCgaT66B.1.5260.000141
ORF1ab/nsp12499D499DgaCgaT55A.23.10.003521
ORF1ab/nsp12499D499DgaCgaT55AY.5.40.001384
ORF1ab/nsp12499D499DgaCgaT55B.1.177.210.000382
ORF1ab/nsp12499D499DgaCgaT55B.1.177.810.000947
ORF1ab/nsp12499D499DgaCgaT55B.1.2210.000355
ORF1ab/nsp12499D499DgaCgaT55B.1.5000.263158
ORF1ab/nsp12499D499DgaCgaT55C.180.012953
ORF1ab/nsp12499D499DgaCgaT55Q.80.000825
ORF1ab/nsp12499D499DgaCgaT44AY.360.000593
ORF1ab/nsp12499D499DgaCgaT44AY.39.20.006163
ORF1ab/nsp12499D499DgaCgaT44AY.410.001176
ORF1ab/nsp12499D499DgaCgaT44AY.460.000416
ORF1ab/nsp12499D499DgaCgaT44AY.540.000381
ORF1ab/nsp12499D499DgaCgaT44AY.630.001547
ORF1ab/nsp12499D499DgaCgaT44AY.75.10.000721
ORF1ab/nsp12499D499DgaCgaT44AY.98.10.000194
ORF1ab/nsp12499D499DgaCgaT44B.1.2390.004884
ORF1ab/nsp12499D499DgaCgaT44B.1.3110.001098
ORF1ab/nsp12499D499DgaCgaT44B.1.5750.001214
ORF1ab/nsp12499D499DgaCgaT44P.20.000747
ORF1ab/nsp12499D499DgaCgaT33AY.1190.000106
ORF1ab/nsp12499D499DgaCgaT33AY.160.001139
ORF1ab/nsp12499D499DgaCgaT33AY.450.000365
ORF1ab/nsp12499D499DgaCgaT33B.1.1.2220.000612
ORF1ab/nsp12499D499DgaCgaT33B.1.1.4200.003018
ORF1ab/nsp12499D499DgaCgaT33B.1.1.4340.001046
ORF1ab/nsp12499D499DgaCgaT33B.1.177.120.000455
ORF1ab/nsp12499D499DgaCgaT33B.1.36.290.001552
ORF1ab/nsp12499D499DgaCgaT33B.1.5170.001281
ORF1ab/nsp12499D499DgaCgaT33B.1.6050.017857
ORF1ab/nsp12499D499DgaCgaT22A.270.003311
ORF1ab/nsp12499D499DgaCgaT22AY.1170.000169
ORF1ab/nsp12499D499DgaCgaT22AY.1210.000271
ORF1ab/nsp12499D499DgaCgaT22AY.320.001065
ORF1ab/nsp12499D499DgaCgaT22AY.370.000632
ORF1ab/nsp12499D499DgaCgaT22AY.46.40.000329
ORF1ab/nsp12499D499DgaCgaT22AY.550.001835
ORF1ab/nsp12499D499DgaCgaT22AY.620.000871
ORF1ab/nsp12499D499DgaCgaT22AY.80.001212
ORF1ab/nsp12499D499DgaCgaT22AY.980.000158
ORF1ab/nsp12499D499DgaCgaT22B.1.1.2320.00363
ORF1ab/nsp12499D499DgaCgaT22B.1.1.370.000386
ORF1ab/nsp12499D499DgaCgaT22B.1.1.4160.00181
ORF1ab/nsp12499D499DgaCgaT22B.1.1280.001271
ORF1ab/nsp12499D499DgaCgaT22B.1.177.160.001329
ORF1ab/nsp12499D499DgaCgaT22B.1.177.50.002484
ORF1ab/nsp12499D499DgaCgaT22B.1.4000.000858
ORF1ab/nsp12499D499DgaCgaT22B.1.4590.008163
ORF1ab/nsp12499D499DgaCgaT22B.1.4970.00063
ORF1ab/nsp12499D499DgaCgaT22B.1.5960.000174
ORF1ab/nsp12499D499DgaCgaT22B.1.617.10.000258
ORF1ab/nsp12499D499DgaCgaT22B.1.6210.000177
ORF1ab/nsp12499D499DgaCgaT22B.60.00182
ORF1ab/nsp12499D499DgaCgaT22D.20.00015
ORF1ab/nsp12499D499DgaCgaT22P.1.120.000968
ORF1ab/nsp12499D499DgaCgaT11A.20.000662
ORF1ab/nsp12499D499DgaCgaT11A.2.50.000499
ORF1ab/nsp12499D499DgaCgaT11A.2.5.30.010309
ORF1ab/nsp12499D499DgaCgaT11AY.1090.00074
ORF1ab/nsp12499D499DgaCgaT11AY.1100.000113
ORF1ab/nsp12499D499DgaCgaT11AY.1110.000183
ORF1ab/nsp12499D499DgaCgaT11AY.130.000161
ORF1ab/nsp12499D499DgaCgaT11AY.140.000088
ORF1ab/nsp12499D499DgaCgaT11AY.16.10.00047
ORF1ab/nsp12499D499DgaCgaT11AY.3.10.000085
ORF1ab/nsp12499D499DgaCgaT11AY.34.10.00051
ORF1ab/nsp12499D499DgaCgaT11AY.350.000233
ORF1ab/nsp12499D499DgaCgaT11AY.380.000499
ORF1ab/nsp12499D499DgaCgaT11AY.4.10.000737
ORF1ab/nsp12499D499DgaCgaT11AY.4.40.000409
ORF1ab/nsp12499D499DgaCgaT11AY.46.60.000072
ORF1ab/nsp12499D499DgaCgaT11AY.590.00053
ORF1ab/nsp12499D499DgaCgaT11AY.650.000533
ORF1ab/nsp12499D499DgaCgaT11AY.730.000665
ORF1ab/nsp12499D499DgaCgaT11AY.740.000116
ORF1ab/nsp12499D499DgaCgaT11AY.770.001127
ORF1ab/nsp12499D499DgaCgaT11AY.90.000068
ORF1ab/nsp12499D499DgaCgaT11AY.9.10.000084
ORF1ab/nsp12499D499DgaCgaT11AZ.10.000867
ORF1ab/nsp12499D499DgaCgaT11B.1.1.1610.003534
ORF1ab/nsp12499D499DgaCgaT11B.1.1.1890.001513
ORF1ab/nsp12499D499DgaCgaT11B.1.1.1980.001468
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2410.00207
ORF1ab/nsp12499D499DgaCgaT11B.1.1.250.000569
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2540.011236
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2800.003086
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3040.002809
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3160.000925
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3480.000796
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3760.005952
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3770.001381
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3970.002252
ORF1ab/nsp12499D499DgaCgaT11B.1.1.400.034483
ORF1ab/nsp12499D499DgaCgaT11B.1.1.4330.001425
ORF1ab/nsp12499D499DgaCgaT11B.1.1.4850.016667
ORF1ab/nsp12499D499DgaCgaT11B.1.1.4860.001577
ORF1ab/nsp12499D499DgaCgaT11B.1.1.5260.003546
ORF1ab/nsp12499D499DgaCgaT11B.1.1050.009615
ORF1ab/nsp12499D499DgaCgaT11B.1.160.140.002119
ORF1ab/nsp12499D499DgaCgaT11B.1.177.320.00135
ORF1ab/nsp12499D499DgaCgaT11B.1.177.510.004566
ORF1ab/nsp12499D499DgaCgaT11B.1.177.530.002392
ORF1ab/nsp12499D499DgaCgaT11B.1.177.600.000218
ORF1ab/nsp12499D499DgaCgaT11B.1.177.730.000566
ORF1ab/nsp12499D499DgaCgaT11B.1.177.820.000477
ORF1ab/nsp12499D499DgaCgaT11B.1.177.870.000728
ORF1ab/nsp12499D499DgaCgaT11B.1.1890.004292
ORF1ab/nsp12499D499DgaCgaT11B.1.230.006061
ORF1ab/nsp12499D499DgaCgaT11B.1.2340.000132
ORF1ab/nsp12499D499DgaCgaT11B.1.2400.000216
ORF1ab/nsp12499D499DgaCgaT11B.1.2410.000812
ORF1ab/nsp12499D499DgaCgaT11B.1.258.100.011364
ORF1ab/nsp12499D499DgaCgaT11B.1.2600.003344
ORF1ab/nsp12499D499DgaCgaT11B.1.2650.001271
ORF1ab/nsp12499D499DgaCgaT11B.1.2790.000514
ORF1ab/nsp12499D499DgaCgaT11B.1.3360.002439
ORF1ab/nsp12499D499DgaCgaT11B.1.3490.000715
ORF1ab/nsp12499D499DgaCgaT11B.1.3570.009524
ORF1ab/nsp12499D499DgaCgaT11B.1.36.170.000494
ORF1ab/nsp12499D499DgaCgaT11B.1.36.280.005747
ORF1ab/nsp12499D499DgaCgaT11B.1.3780.006849
ORF1ab/nsp12499D499DgaCgaT11B.1.4280.00102
ORF1ab/nsp12499D499DgaCgaT11B.1.4410.009615
ORF1ab/nsp12499D499DgaCgaT11B.1.5090.000866
ORF1ab/nsp12499D499DgaCgaT11B.1.5600.00463
ORF1ab/nsp12499D499DgaCgaT11B.1.564.10.001577
ORF1ab/nsp12499D499DgaCgaT11B.1.575.10.002439
ORF1ab/nsp12499D499DgaCgaT11B.1.5760.000907
ORF1ab/nsp12499D499DgaCgaT11B.1.5950.000261
ORF1ab/nsp12499D499DgaCgaT11B.1.6230.000536
ORF1ab/nsp12499D499DgaCgaT11B.1.6250.002353
ORF1ab/nsp12499D499DgaCgaT11B.1.6340.003425
ORF1ab/nsp12499D499DgaCgaT11B.1.700.02439
ORF1ab/nsp12499D499DgaCgaT11B.1.940.027027
ORF1ab/nsp12499D499DgaCgaT11B.310.003731
ORF1ab/nsp12499D499DgaCgaT11C.10.002392
ORF1ab/nsp12499D499DgaCgaT11C.1.20.004255
ORF1ab/nsp12499D499DgaCgaT11C.300.001727
ORF1ab/nsp12499D499DgaCgaT11N.50.001767
ORF1ab/nsp12499D499DgaCgaT11P.1.70.000319
ORF1ab/nsp12499D499DgaCgaT11R.10.00009