CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 421 | D421D | D4813D | syn | gaC | gaT | 838 | 838 | 1 | 14701-14703 |
Details of the mutation D421D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 838 | 838 | All | 0.00016 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 188 | 188 | B.1.1.176 | 0.082601 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 98 | 98 | B.1.1.7 | 0.000088 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 80 | 80 | C.11 | 0.851064 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 66 | 66 | AY.4 | 0.000103 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 42 | 42 | B.1.177.7 | 0.006924 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 31 | 31 | B.1.221 | 0.002202 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 24 | 24 | AY.103 | 0.000149 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 15 | 15 | B.1.177.16 | 0.009967 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 13 | 13 | AY.54 | 0.00124 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 8 | 8 | B.1.1.518 | 0.050633 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 5 | 5 | P.1.4 | 0.004883 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.331 | 0.011628 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 421 | D421D | gaC | gaT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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