CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 291 | D291D | D4683D | syn | gaT | gaC | 2876 | 2876 | 1 | 14311-14313 |
Details of the mutation D291D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2876 | 2876 | All | 0.00055 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 753 | 753 | B.1.1.432 | 0.953165 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 414 | 414 | B.1.1.7 | 0.000371 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 285 | 285 | B.1.1.277 | 0.216237 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 184 | 184 | B.1.617.2 | 0.000693 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 144 | 144 | AY.98 | 0.011375 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 116 | 116 | B.1 | 0.001063 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 99 | 99 | AY.116.1 | 0.030832 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 80 | 80 | B.1.534 | 1 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 65 | 65 | B.1.1.244 | 1 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 47 | 47 | B.1.597 | 0.217593 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 39 | 39 | AY.43 | 0.000173 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 37 | 37 | AY.75.1 | 0.006671 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 35 | 35 | B.1.429 | 0.000824 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 33 | 33 | B.1.2 | 0.000291 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 31 | 31 | AY.103 | 0.000192 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 26 | 26 | AY.102 | 0.000689 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 25 | 25 | P.2 | 0.004666 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 20 | 20 | B.1.1.515 | 0.4 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 18 | 18 | AY.34 | 0.001745 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 15 | 15 | AY.116 | 0.004302 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 13 | 13 | B.1.1.214 | 0.000721 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 7 | 7 | B.1.632 | 0.04698 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 5 | 5 | A | 0.001935 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 5 | 5 | B.1.177.16 | 0.003322 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp12 | 291 | D291D | gaT | gaC | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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