CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 140 | D140D | D4532D | syn | gaC | gaT | 121029 | 121029 | 1 | 13858-13860 |
Details of the mutation D140D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 121029 | 121029 | All | 0.023148 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 62500 | 62500 | P.1 | 0.984624 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 20904 | 20904 | P.1.14 | 0.999235 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 6140 | 6140 | P.1.17 | 0.993206 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4278 | 4278 | P.1.15 | 0.993959 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3689 | 3689 | P.1.10 | 0.994072 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3117 | 3117 | P.1.7 | 0.995211 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3029 | 3029 | P.1.1 | 0.962198 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2625 | 2625 | P.1.16 | 0.982043 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1953 | 1953 | P.1.12 | 0.945305 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1179 | 1179 | B.1.1.7 | 0.001055 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1143 | 1143 | P.1.17.1 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1105 | 1105 | P.1.13 | 0.992812 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1023 | 1023 | P.1.4 | 0.999023 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 864 | 864 | P.1.2 | 0.998844 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 681 | 681 | AY.54 | 0.064931 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 615 | 615 | AY.4 | 0.000957 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 511 | 511 | P.1.6 | 0.994163 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 354 | 354 | B.1.2 | 0.003117 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 260 | 260 | B.1.617.2 | 0.000979 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 247 | 247 | B.1 | 0.002262 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 236 | 236 | B.1.1 | 0.004281 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 209 | 209 | P.1.8 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 208 | 208 | P.1.9 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 198 | 198 | AY.4.2 | 0.004294 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 183 | 183 | AY.44 | 0.001114 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 159 | 159 | AY.25 | 0.000956 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 155 | 155 | B.1.127 | 0.340659 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 141 | 141 | B.1.429 | 0.003318 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 134 | 134 | AY.43 | 0.000594 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 123 | 123 | P.1.10.1 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 117 | 117 | B.1.240 | 0.025221 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 97 | 97 | AY.119 | 0.003425 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 93 | 93 | B.1.349 | 0.066476 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 92 | 92 | B.1.177 | 0.001211 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 85 | 85 | AY.103 | 0.000528 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 78 | 78 | AY.13 | 0.012556 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 78 | 78 | B.1.177.86 | 0.014309 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 74 | 74 | B.1.622 | 0.961039 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 69 | 69 | AY.20 | 0.002682 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 69 | 69 | B.1.243 | 0.004801 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 68 | 68 | B.1.427 | 0.003434 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 57 | 57 | B.1.575 | 0.017294 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 56 | 56 | AY.3 | 0.000557 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 51 | 51 | B.1.566 | 0.980769 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 50 | 50 | B.1.591 | 0.531915 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 46 | 46 | B.1.258.17 | 0.004783 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 44 | 44 | AY.98.1 | 0.002131 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 44 | 44 | AY.99.2 | 0.004055 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 42 | 42 | C.37 | 0.004875 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 42 | 42 | R.1 | 0.00378 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 41 | 41 | B.1.1.519 | 0.001628 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 41 | 41 | B.1.160 | 0.001279 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 38 | 38 | B.1.221 | 0.002699 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 36 | 36 | B.1.1.28 | 0.011204 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 36 | 36 | B.1.609 | 0.017258 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 34 | 34 | AY.102 | 0.000901 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 34 | 34 | B.1.1.528 | 0.163462 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 34 | 34 | B.1.526 | 0.000799 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 33 | 33 | B.1.351 | 0.000981 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 32 | 32 | AY.5 | 0.000661 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 31 | 31 | AY.4.4 | 0.012684 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 30 | 30 | AY.39.1 | 0.001188 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 29 | 29 | B.1.177.65 | 0.019295 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 29 | 29 | B.1.258 | 0.00193 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 28 | 28 | B.1.177.35 | 0.01935 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 28 | 28 | B.1.621 | 0.002479 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 27 | 27 | AY.120 | 0.001004 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 26 | 26 | B.1.234 | 0.003431 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 25 | 25 | AY.39 | 0.000618 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 24 | 24 | B.1.177.81 | 0.004544 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 24 | 24 | P.2 | 0.004479 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 22 | 22 | AY.26 | 0.000623 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 19 | 19 | B.1.1.317 | 0.007822 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 19 | 19 | B.1.177.21 | 0.001453 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 18 | 18 | B.1.577 | 0.012371 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 17 | 17 | B.1.1.47 | 0.090909 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 16 | 16 | AY.104 | 0.031746 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 15 | 15 | AY.100 | 0.00069 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 14 | 14 | AY.85 | 0.00598 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 13 | 13 | AY.101 | 0.006376 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 13 | 13 | B.1.1.306 | 0.005699 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 12 | 12 | B.1.1.291 | 0.008909 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 12 | 12 | B.1.400 | 0.005148 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 11 | 11 | AY.6 | 0.000452 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 11 | 11 | B.1.596 | 0.000959 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 9 | 9 | AY.95 | 0.006849 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 9 | 9 | B.1.1.253 | 0.022556 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 9 | 9 | B.1.1.63 | 0.003472 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 8 | 8 | C.37.1 | 0.020942 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | A.1 | 0.001973 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | B.1.1.311 | 0.002507 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | B.1.1.391 | 0.059829 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | B.1.588 | 0.006369 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | B.1.620 | 0.006623 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 6 | 6 | B.1.177.77 | 0.004357 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.1.369 | 0.002231 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.177.33 | 0.008224 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.177.42 | 0.004472 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.396 | 0.003529 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.416 | 0.006345 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.497 | 0.001574 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | P.3 | 0.007974 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | AY.28 | 0.005671 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.1.241 | 0.006211 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.147 | 0.002268 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.258.23 | 0.071429 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.305 | 0.006452 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.465 | 0.011407 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | B.1.571 | 0.029126 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.177.76 | 0.004988 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.213 | 0.029851 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.426 | 0.035714 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.188 | 0.016667 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp12 | 140 | D140D | gaC | gaT | 1 | 1 | W.1 | 0.008696 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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