CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A97A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1297A97AA4489AsyngcTgcC3072620.8534213729-13731
ORF1ab/nsp1297A97AA4489AsyngcTgcA307400.13029313729-13731
ORF1ab/nsp1297A97AA4489AsyngcTgcG30750.016286613729-13731

Details of the mutation A97A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1297A97AgcTgcC262307All0.00005
ORF1ab/nsp1297A97AgcTgcA40307All0.000008
ORF1ab/nsp1297A97AgcTgcG5307All0.000001
ORF1ab/nsp1297A97AgcTgcC5151AY.440.00031
ORF1ab/nsp1297A97AgcTgcC3535B.1.6210.003098
ORF1ab/nsp1297A97AgcTgcC2022B.1.20.000176
ORF1ab/nsp1297A97AgcTgcA222B.1.20.000018
ORF1ab/nsp1297A97AgcTgcC1919P.1.140.000908
ORF1ab/nsp1297A97AgcTgcC1018B.1.1.70.000009
ORF1ab/nsp1297A97AgcTgcG418B.1.1.70.000004
ORF1ab/nsp1297A97AgcTgcA418B.1.1.70.000004
ORF1ab/nsp1297A97AgcTgcA1316B.10.000119
ORF1ab/nsp1297A97AgcTgcC316B.10.000027
ORF1ab/nsp1297A97AgcTgcC1316B.1.5960.001133
ORF1ab/nsp1297A97AgcTgcA316B.1.5960.000261
ORF1ab/nsp1297A97AgcTgcC1212AY.250.000072
ORF1ab/nsp1297A97AgcTgcC1012AY.40.000016
ORF1ab/nsp1297A97AgcTgcA212AY.40.000003
ORF1ab/nsp1297A97AgcTgcC1111AY.30.000109
ORF1ab/nsp1297A97AgcTgcA69B.1.10.000109
ORF1ab/nsp1297A97AgcTgcC39B.1.10.000054
ORF1ab/nsp1297A97AgcTgcC77AY.75.10.001262
ORF1ab/nsp1297A97AgcTgcC67B.1.617.20.000023
ORF1ab/nsp1297A97AgcTgcA17B.1.617.20.000004
ORF1ab/nsp1297A97AgcTgcC45AY.1030.000025
ORF1ab/nsp1297A97AgcTgcA15AY.1030.000006
ORF1ab/nsp1297A97AgcTgcC45AY.430.000018
ORF1ab/nsp1297A97AgcTgcA15AY.430.000004
ORF1ab/nsp1297A97AgcTgcC44AY.200.000155
ORF1ab/nsp1297A97AgcTgcC44B.1.1.3070.010127
ORF1ab/nsp1297A97AgcTgcC33AY.750.000168
ORF1ab/nsp1297A97AgcTgcC33AY.9.20.00011
ORF1ab/nsp1297A97AgcTgcC33B.1.1.500.002037
ORF1ab/nsp1297A97AgcTgcC33B.1.2340.000396
ORF1ab/nsp1297A97AgcTgcC23P.10.000032
ORF1ab/nsp1297A97AgcTgcA13P.10.000016
ORF1ab/nsp1297A97AgcTgcA220.111111
ORF1ab/nsp1297A97AgcTgcC22A0.000774
ORF1ab/nsp1297A97AgcTgcC22AY.1060.00067
ORF1ab/nsp1297A97AgcTgcC22B.1.1.2650.006309
ORF1ab/nsp1297A97AgcTgcC22B.1.1.3060.000877
ORF1ab/nsp1297A97AgcTgcC22B.1.360.000292
ORF1ab/nsp1297A97AgcTgcC22B.1.5260.000047
ORF1ab/nsp1297A97AgcTgcC22B.1.6370.000146
ORF1ab/nsp1297A97AgcTgcA22D.20.00015
ORF1ab/nsp1297A97AgcTgcC11AY.1000.000046
ORF1ab/nsp1297A97AgcTgcC11AY.1190.000035
ORF1ab/nsp1297A97AgcTgcC11AY.4.20.000022
ORF1ab/nsp1297A97AgcTgcC11AY.400.000964
ORF1ab/nsp1297A97AgcTgcC11AY.70.000196
ORF1ab/nsp1297A97AgcTgcC11AY.770.001127
ORF1ab/nsp1297A97AgcTgcC11AY.860.00083
ORF1ab/nsp1297A97AgcTgcC11AY.90.000068
ORF1ab/nsp1297A97AgcTgcC11B.1.1.2140.000055
ORF1ab/nsp1297A97AgcTgcC11B.1.1.2840.000107
ORF1ab/nsp1297A97AgcTgcG11B.1.1.3180.000302
ORF1ab/nsp1297A97AgcTgcC11B.1.1770.000013
ORF1ab/nsp1297A97AgcTgcC11B.1.2210.000071
ORF1ab/nsp1297A97AgcTgcC11B.1.258.170.000104
ORF1ab/nsp1297A97AgcTgcC11B.1.3460.001311
ORF1ab/nsp1297A97AgcTgcA11B.1.36.80.001
ORF1ab/nsp1297A97AgcTgcC11B.1.4560.003268
ORF1ab/nsp1297A97AgcTgcC11B.1.466.20.000391
ORF1ab/nsp1297A97AgcTgcC11B.1.5250.000113
ORF1ab/nsp1297A97AgcTgcA11B.1.5950.000261
ORF1ab/nsp1297A97AgcTgcC11P.1.150.000232