CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A797A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12797A797AA5189AsyngcAgcT3542780.78531115829-15831
ORF1ab/nsp12797A797AA5189AsyngcAgcG354570.16101715829-15831
ORF1ab/nsp12797A797AA5189AsyngcAgcC354190.053672315829-15831

Details of the mutation A797A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12797A797AgcAgcT278354All0.000053
ORF1ab/nsp12797A797AgcAgcG57354All0.000011
ORF1ab/nsp12797A797AgcAgcC19354All0.000004
ORF1ab/nsp12797A797AgcAgcT7278B.1.1.70.000064
ORF1ab/nsp12797A797AgcAgcG678B.1.1.70.000005
ORF1ab/nsp12797A797AgcAgcT7373B.1.5960.006361
ORF1ab/nsp12797A797AgcAgcT2525AY.3.10.002131
ORF1ab/nsp12797A797AgcAgcT1819B.10.000165
ORF1ab/nsp12797A797AgcAgcG119B.10.000009
ORF1ab/nsp12797A797AgcAgcT1518B.1.5260.000353
ORF1ab/nsp12797A797AgcAgcC318B.1.5260.000071
ORF1ab/nsp12797A797AgcAgcT817AY.40.000012
ORF1ab/nsp12797A797AgcAgcG717AY.40.000011
ORF1ab/nsp12797A797AgcAgcC217AY.40.000003
ORF1ab/nsp12797A797AgcAgcG88AY.390.000198
ORF1ab/nsp12797A797AgcAgcT57AY.1030.000031
ORF1ab/nsp12797A797AgcAgcG27AY.1030.000012
ORF1ab/nsp12797A797AgcAgcG37AY.440.000018
ORF1ab/nsp12797A797AgcAgcC37AY.440.000018
ORF1ab/nsp12797A797AgcAgcT17AY.440.000006
ORF1ab/nsp12797A797AgcAgcT56AY.250.00003
ORF1ab/nsp12797A797AgcAgcG16AY.250.000006
ORF1ab/nsp12797A797AgcAgcT55AY.4.50.000537
ORF1ab/nsp12797A797AgcAgcT55B.1.20.000044
ORF1ab/nsp12797A797AgcAgcC340.166667
ORF1ab/nsp12797A797AgcAgcT140.055556
ORF1ab/nsp12797A797AgcAgcT34AY.30.00003
ORF1ab/nsp12797A797AgcAgcC14AY.30.00001
ORF1ab/nsp12797A797AgcAgcG34B.1.617.20.000011
ORF1ab/nsp12797A797AgcAgcT14B.1.617.20.000004
ORF1ab/nsp12797A797AgcAgcT33B.1.10.000054
ORF1ab/nsp12797A797AgcAgcG33B.1.1770.00004
ORF1ab/nsp12797A797AgcAgcT23B.1.3510.000059
ORF1ab/nsp12797A797AgcAgcG13B.1.3510.00003
ORF1ab/nsp12797A797AgcAgcG33Y.10.038462
ORF1ab/nsp12797A797AgcAgcG12AY.1020.000027
ORF1ab/nsp12797A797AgcAgcT12AY.1020.000027
ORF1ab/nsp12797A797AgcAgcT22AY.1100.000225
ORF1ab/nsp12797A797AgcAgcG22AY.116.10.000623
ORF1ab/nsp12797A797AgcAgcT22AY.1200.000074
ORF1ab/nsp12797A797AgcAgcC12AY.200.000039
ORF1ab/nsp12797A797AgcAgcG12AY.200.000039
ORF1ab/nsp12797A797AgcAgcT12AY.430.000004
ORF1ab/nsp12797A797AgcAgcG12AY.430.000004
ORF1ab/nsp12797A797AgcAgcG22AY.90.000135
ORF1ab/nsp12797A797AgcAgcT22B.1.1.5190.000079
ORF1ab/nsp12797A797AgcAgcT22B.1.1.5210.010695
ORF1ab/nsp12797A797AgcAgcT22B.1.177.540.001213
ORF1ab/nsp12797A797AgcAgcC22B.1.177.750.002081
ORF1ab/nsp12797A797AgcAgcT22P.10.000032
ORF1ab/nsp12797A797AgcAgcT11AY.1090.00074
ORF1ab/nsp12797A797AgcAgcT11AY.1190.000035
ORF1ab/nsp12797A797AgcAgcT11AY.290.000016
ORF1ab/nsp12797A797AgcAgcC11AY.460.000104
ORF1ab/nsp12797A797AgcAgcG11AY.46.40.000165
ORF1ab/nsp12797A797AgcAgcT11AY.50.000021
ORF1ab/nsp12797A797AgcAgcG11AY.540.000095
ORF1ab/nsp12797A797AgcAgcT11AY.60.000041
ORF1ab/nsp12797A797AgcAgcG11AY.660.00107
ORF1ab/nsp12797A797AgcAgcT11AY.880.000884
ORF1ab/nsp12797A797AgcAgcG11AY.9.20.000037
ORF1ab/nsp12797A797AgcAgcT11B.1.1.10.000327
ORF1ab/nsp12797A797AgcAgcG11B.1.1.250.000569
ORF1ab/nsp12797A797AgcAgcG11B.1.1.3260.001761
ORF1ab/nsp12797A797AgcAgcG11B.1.1.330.000421
ORF1ab/nsp12797A797AgcAgcG11B.1.1.3690.000446
ORF1ab/nsp12797A797AgcAgcG11B.1.1.4340.000349
ORF1ab/nsp12797A797AgcAgcC11B.1.1.5230.001563
ORF1ab/nsp12797A797AgcAgcC11B.1.177.440.000519
ORF1ab/nsp12797A797AgcAgcT11B.1.177.620.001192
ORF1ab/nsp12797A797AgcAgcT11B.1.2210.000071
ORF1ab/nsp12797A797AgcAgcT11B.1.2430.00007
ORF1ab/nsp12797A797AgcAgcT11B.1.2580.000067
ORF1ab/nsp12797A797AgcAgcG11B.1.258.110.000396
ORF1ab/nsp12797A797AgcAgcC11B.1.2810.021739
ORF1ab/nsp12797A797AgcAgcT11B.1.351.50.0006
ORF1ab/nsp12797A797AgcAgcT11B.1.360.000146
ORF1ab/nsp12797A797AgcAgcT11B.1.4290.000024
ORF1ab/nsp12797A797AgcAgcT11B.1.4620.007246
ORF1ab/nsp12797A797AgcAgcT11B.1.4970.000315
ORF1ab/nsp12797A797AgcAgcT11B.1.6000.005848
ORF1ab/nsp12797A797AgcAgcG11B.200.023256
ORF1ab/nsp12797A797AgcAgcT11B.290.003509
ORF1ab/nsp12797A797AgcAgcG11C.370.000116
ORF1ab/nsp12797A797AgcAgcT11D.20.000075
ORF1ab/nsp12797A797AgcAgcT11P.1.10.000318
ORF1ab/nsp12797A797AgcAgcT11P.1.130.000898
ORF1ab/nsp12797A797AgcAgcT11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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