CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A634A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12634A634AA5026AsyngcCgcT382734960.91350915340-15342
ORF1ab/nsp12634A634AA5026AsyngcCgcA38273270.085445515340-15342
ORF1ab/nsp12634A634AA5026AsyngcCgcG382740.0010452115340-15342

Details of the mutation A634A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12634A634AgcCgcT34963827All0.000669
ORF1ab/nsp12634A634AgcCgcA3273827All0.000063
ORF1ab/nsp12634A634AgcCgcG43827All0.000001
ORF1ab/nsp12634A634AgcCgcT15381656B.1.1.70.001377
ORF1ab/nsp12634A634AgcCgcA1181656B.1.1.70.000106
ORF1ab/nsp12634A634AgcCgcT464464AY.260.013136
ORF1ab/nsp12634A634AgcCgcT216226AY.40.000336
ORF1ab/nsp12634A634AgcCgcA10226AY.40.000016
ORF1ab/nsp12634A634AgcCgcT151151AY.270.009773
ORF1ab/nsp12634A634AgcCgcT9292B.1.5950.024008
ORF1ab/nsp12634A634AgcCgcT7791B.1.617.20.00029
ORF1ab/nsp12634A634AgcCgcA1391B.1.617.20.000049
ORF1ab/nsp12634A634AgcCgcG191B.1.617.20.000004
ORF1ab/nsp12634A634AgcCgcT8383AY.430.000368
ORF1ab/nsp12634A634AgcCgcT7577B.1.20.00066
ORF1ab/nsp12634A634AgcCgcA277B.1.20.000018
ORF1ab/nsp12634A634AgcCgcT7575B.1.36.170.037055
ORF1ab/nsp12634A634AgcCgcT6060B.1.177.210.004588
ORF1ab/nsp12634A634AgcCgcT5151P.1.170.00825
ORF1ab/nsp12634A634AgcCgcT4149AY.440.00025
ORF1ab/nsp12634A634AgcCgcA849AY.440.000049
ORF1ab/nsp12634A634AgcCgcA3146AY.1200.001153
ORF1ab/nsp12634A634AgcCgcT1546AY.1200.000558
ORF1ab/nsp12634A634AgcCgcA2446AY.30.000239
ORF1ab/nsp12634A634AgcCgcT2246AY.30.000219
ORF1ab/nsp12634A634AgcCgcT3941B.1.1770.000514
ORF1ab/nsp12634A634AgcCgcA241B.1.1770.000026
ORF1ab/nsp12634A634AgcCgcT3535B.1.177.80.026336
ORF1ab/nsp12634A634AgcCgcT2833B.10.000256
ORF1ab/nsp12634A634AgcCgcA533B.10.000046
ORF1ab/nsp12634A634AgcCgcT3232AY.1030.000199
ORF1ab/nsp12634A634AgcCgcT2626AY.930.0071
ORF1ab/nsp12634A634AgcCgcA2021B.1.177.520.035149
ORF1ab/nsp12634A634AgcCgcT121B.1.177.520.001757
ORF1ab/nsp12634A634AgcCgcT1920AY.250.000114
ORF1ab/nsp12634A634AgcCgcA120AY.250.000006
ORF1ab/nsp12634A634AgcCgcT2020B.1.5510.025806
ORF1ab/nsp12634A634AgcCgcT1616B.1.258.170.001664
ORF1ab/nsp12634A634AgcCgcT1616P.10.000252
ORF1ab/nsp12634A634AgcCgcT1515B.1.1.3300.9375
ORF1ab/nsp12634A634AgcCgcA1414AY.1210.001894
ORF1ab/nsp12634A634AgcCgcT1012AY.50.000206
ORF1ab/nsp12634A634AgcCgcG112AY.50.000021
ORF1ab/nsp12634A634AgcCgcA112AY.50.000021
ORF1ab/nsp12634A634AgcCgcA610AY.9.20.00022
ORF1ab/nsp12634A634AgcCgcT410AY.9.20.000147
ORF1ab/nsp12634A634AgcCgcT1010B.1.3510.000297
ORF1ab/nsp12634A634AgcCgcT89AY.1020.000212
ORF1ab/nsp12634A634AgcCgcA19AY.1020.000027
ORF1ab/nsp12634A634AgcCgcA59AY.390.000124
ORF1ab/nsp12634A634AgcCgcT49AY.390.000099
ORF1ab/nsp12634A634AgcCgcT99AY.750.000504
ORF1ab/nsp12634A634AgcCgcT99B.1.1490.030822
ORF1ab/nsp12634A634AgcCgcT99C.370.001045
ORF1ab/nsp12634A634AgcCgcT88AY.120.10.002568
ORF1ab/nsp12634A634AgcCgcT88AY.290.000126
ORF1ab/nsp12634A634AgcCgcT78AY.340.000679
ORF1ab/nsp12634A634AgcCgcA18AY.340.000097
ORF1ab/nsp12634A634AgcCgcA78B.1.1600.000218
ORF1ab/nsp12634A634AgcCgcT18B.1.1600.000031
ORF1ab/nsp12634A634AgcCgcA68B.1.2210.000426
ORF1ab/nsp12634A634AgcCgcT28B.1.2210.000142
ORF1ab/nsp12634A634AgcCgcT57AY.230.000349
ORF1ab/nsp12634A634AgcCgcG27AY.230.000139
ORF1ab/nsp12634A634AgcCgcA57AY.39.10.000198
ORF1ab/nsp12634A634AgcCgcT27AY.39.10.000079
ORF1ab/nsp12634A634AgcCgcA77B.1.1.2630.010903
ORF1ab/nsp12634A634AgcCgcT77B.1.1.5190.000278
ORF1ab/nsp12634A634AgcCgcT56AY.1190.000177
ORF1ab/nsp12634A634AgcCgcA16AY.1190.000035
ORF1ab/nsp12634A634AgcCgcA36AY.200.000117
ORF1ab/nsp12634A634AgcCgcT36AY.200.000117
ORF1ab/nsp12634A634AgcCgcT66AY.46.60.000433
ORF1ab/nsp12634A634AgcCgcT66B.1.1.3180.001811
ORF1ab/nsp12634A634AgcCgcT66B.1.5250.000679
ORF1ab/nsp12634A634AgcCgcT45AY.470.000124
ORF1ab/nsp12634A634AgcCgcA15AY.470.000031
ORF1ab/nsp12634A634AgcCgcT55AY.590.002648
ORF1ab/nsp12634A634AgcCgcT55B.1.2580.000333
ORF1ab/nsp12634A634AgcCgcT55B.1.4290.000118
ORF1ab/nsp12634A634AgcCgcT44AY.330.000267
ORF1ab/nsp12634A634AgcCgcT44AY.360.000593
ORF1ab/nsp12634A634AgcCgcT44AY.4.20.000087
ORF1ab/nsp12634A634AgcCgcT44AY.540.000381
ORF1ab/nsp12634A634AgcCgcA34AY.980.000237
ORF1ab/nsp12634A634AgcCgcT14AY.980.000079
ORF1ab/nsp12634A634AgcCgcA24AY.99.20.000184
ORF1ab/nsp12634A634AgcCgcT24AY.99.20.000184
ORF1ab/nsp12634A634AgcCgcA34B.1.10.000054
ORF1ab/nsp12634A634AgcCgcT14B.1.10.000018
ORF1ab/nsp12634A634AgcCgcT44B.1.5750.001214
ORF1ab/nsp12634A634AgcCgcT33AY.1180.000188
ORF1ab/nsp12634A634AgcCgcT33AY.400.002893
ORF1ab/nsp12634A634AgcCgcT23AY.60.000082
ORF1ab/nsp12634A634AgcCgcA13AY.60.000041
ORF1ab/nsp12634A634AgcCgcT33AY.690.00056
ORF1ab/nsp12634A634AgcCgcT33AY.75.10.000541
ORF1ab/nsp12634A634AgcCgcT33AY.90.000203
ORF1ab/nsp12634A634AgcCgcT33B.1.1.1530.003286
ORF1ab/nsp12634A634AgcCgcT33B.1.1470.002268
ORF1ab/nsp12634A634AgcCgcA33B.1.177.810.000568
ORF1ab/nsp12634A634AgcCgcT33B.1.2060.002447
ORF1ab/nsp12634A634AgcCgcT33B.1.3360.007317
ORF1ab/nsp12634A634AgcCgcT23B.1.6200.001892
ORF1ab/nsp12634A634AgcCgcA13B.1.6200.000946
ORF1ab/nsp12634A634AgcCgcT23B.1.6210.000177
ORF1ab/nsp12634A634AgcCgcA13B.1.6210.000089
ORF1ab/nsp12634A634AgcCgcT33P.20.00056
ORF1ab/nsp12634A634AgcCgcT12AY.1000.000046
ORF1ab/nsp12634A634AgcCgcA12AY.1000.000046
ORF1ab/nsp12634A634AgcCgcT22AY.1130.000285
ORF1ab/nsp12634A634AgcCgcT22AY.1170.000169
ORF1ab/nsp12634A634AgcCgcT22AY.140.000176
ORF1ab/nsp12634A634AgcCgcT22AY.320.001065
ORF1ab/nsp12634A634AgcCgcA22AY.46.40.000329
ORF1ab/nsp12634A634AgcCgcT22AY.610.00021
ORF1ab/nsp12634A634AgcCgcA22AY.700.000417
ORF1ab/nsp12634A634AgcCgcA22AY.710.00095
ORF1ab/nsp12634A634AgcCgcT22B.1.1.2140.000111
ORF1ab/nsp12634A634AgcCgcT22B.1.1.280.000622
ORF1ab/nsp12634A634AgcCgcT22B.1.1.3980.006452
ORF1ab/nsp12634A634AgcCgcT22B.1.177.800.003824
ORF1ab/nsp12634A634AgcCgcT22B.1.2340.000264
ORF1ab/nsp12634A634AgcCgcT12B.1.4270.00005
ORF1ab/nsp12634A634AgcCgcA12B.1.4270.00005
ORF1ab/nsp12634A634AgcCgcT22B.1.5260.000047
ORF1ab/nsp12634A634AgcCgcT22B.1.5960.000174
ORF1ab/nsp12634A634AgcCgcA22B.1.6370.000146
ORF1ab/nsp12634A634AgcCgcT22D.20.00015
ORF1ab/nsp12634A634AgcCgcA22N.50.003534
ORF1ab/nsp12634A634AgcCgcT22P.1.160.000748
ORF1ab/nsp12634A634AgcCgcT22Q.40.00091
ORF1ab/nsp12634A634AgcCgcT11A0.000387
ORF1ab/nsp12634A634AgcCgcT11A.270.001656
ORF1ab/nsp12634A634AgcCgcT11AY.1010.00049
ORF1ab/nsp12634A634AgcCgcT11AY.29.10.000221
ORF1ab/nsp12634A634AgcCgcT11AY.4.40.000409
ORF1ab/nsp12634A634AgcCgcT11AY.4.50.000107
ORF1ab/nsp12634A634AgcCgcT11AY.450.000122
ORF1ab/nsp12634A634AgcCgcA11AY.46.20.000635
ORF1ab/nsp12634A634AgcCgcT11AY.620.000436
ORF1ab/nsp12634A634AgcCgcT11AY.650.000533
ORF1ab/nsp12634A634AgcCgcT11AY.670.000464
ORF1ab/nsp12634A634AgcCgcT11AY.7.10.000113
ORF1ab/nsp12634A634AgcCgcT11AY.850.000427
ORF1ab/nsp12634A634AgcCgcT11AY.860.00083
ORF1ab/nsp12634A634AgcCgcA11AY.9.10.000084
ORF1ab/nsp12634A634AgcCgcT11AY.920.000287
ORF1ab/nsp12634A634AgcCgcT11AY.98.10.000048
ORF1ab/nsp12634A634AgcCgcA11B0.000128
ORF1ab/nsp12634A634AgcCgcT11B.1.1.1410.002012
ORF1ab/nsp12634A634AgcCgcT11B.1.1.1700.001247
ORF1ab/nsp12634A634AgcCgcT11B.1.1.1860.003436
ORF1ab/nsp12634A634AgcCgcT11B.1.1.2070.001182
ORF1ab/nsp12634A634AgcCgcT11B.1.1.2160.00089
ORF1ab/nsp12634A634AgcCgcA11B.1.1.2220.000204
ORF1ab/nsp12634A634AgcCgcT11B.1.1.2390.032258
ORF1ab/nsp12634A634AgcCgcT11B.1.1.2440.015385
ORF1ab/nsp12634A634AgcCgcA11B.1.1.3020.002075
ORF1ab/nsp12634A634AgcCgcT11B.1.1.3050.003861
ORF1ab/nsp12634A634AgcCgcT11B.1.1.3060.000438
ORF1ab/nsp12634A634AgcCgcA11B.1.1.330.000421
ORF1ab/nsp12634A634AgcCgcA11B.1.1.370.000193
ORF1ab/nsp12634A634AgcCgcT11B.1.1.40.002976
ORF1ab/nsp12634A634AgcCgcT11B.1.1.5150.02
ORF1ab/nsp12634A634AgcCgcT11B.1.1.580.005376
ORF1ab/nsp12634A634AgcCgcT11B.1.110.30.000718
ORF1ab/nsp12634A634AgcCgcT11B.1.1400.018868
ORF1ab/nsp12634A634AgcCgcA11B.1.160.90.007194
ORF1ab/nsp12634A634AgcCgcT11B.1.177.100.000878
ORF1ab/nsp12634A634AgcCgcT11B.1.177.570.000281
ORF1ab/nsp12634A634AgcCgcT11B.1.220.001318
ORF1ab/nsp12634A634AgcCgcT11B.1.2400.000216
ORF1ab/nsp12634A634AgcCgcT11B.1.3110.000275
ORF1ab/nsp12634A634AgcCgcT11B.1.36.240.006173
ORF1ab/nsp12634A634AgcCgcT11B.1.4000.000429
ORF1ab/nsp12634A634AgcCgcT11B.1.4670.04
ORF1ab/nsp12634A634AgcCgcT11B.1.5030.002488
ORF1ab/nsp12634A634AgcCgcA11B.1.5670.003333
ORF1ab/nsp12634A634AgcCgcT11B.1.5760.000907
ORF1ab/nsp12634A634AgcCgcT11B.1.5880.00091
ORF1ab/nsp12634A634AgcCgcT11B.280.003279
ORF1ab/nsp12634A634AgcCgcT11B.550.00295
ORF1ab/nsp12634A634AgcCgcT11B.6.80.008264
ORF1ab/nsp12634A634AgcCgcT11C.160.00106
ORF1ab/nsp12634A634AgcCgcT11C.2.10.006667
ORF1ab/nsp12634A634AgcCgcT11P.1.140.000048
ORF1ab/nsp12634A634AgcCgcT11Q.10.000126
ORF1ab/nsp12634A634AgcCgcT11Q.80.000165
ORF1ab/nsp12634A634AgcCgcT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.