CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A558del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12558A558del1A4950del1delGct-ct81800.98765415112-15114
ORF1ab/nsp12558A558del1A4950del1delgCtg-t8110.012345715112-15114

Details of the mutation A558del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12558A558del1Gct-ct8081All0.000015
ORF1ab/nsp12558A558del1gCtg-t181All0
ORF1ab/nsp12558A558del1Gct-ct6666B.1.1.70.000059
ORF1ab/nsp12558A558del1Gct-ct33B.1.177.820.001432
ORF1ab/nsp12558A558del1Gct-ct33B.1.3510.000089
ORF1ab/nsp12558A558del1Gct-ct22AY.520.001629
ORF1ab/nsp12558A558del1Gct-ct22B.1.1600.000062
ORF1ab/nsp12558A558del1Gct-ct11B.1.177.120.000152
ORF1ab/nsp12558A558del1Gct-ct11B.1.177.60.000977
ORF1ab/nsp12558A558del1Gct-ct11B.1.36.10.00114
ORF1ab/nsp12558A558del1gCtg-t11P.1.10.10.00813
ORF1ab/nsp12558A558del1Gct-ct11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.