CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A558A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12558A558AA4950AsyngcTgcC231120250.87624415112-15114
ORF1ab/nsp12558A558AA4950AsyngcTgcA23112620.11337115112-15114
ORF1ab/nsp12558A558AA4950AsyngcTgcG2311240.010385115112-15114

Details of the mutation A558A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12558A558AgcTgcC20252311All0.000387
ORF1ab/nsp12558A558AgcTgcA2622311All0.00005
ORF1ab/nsp12558A558AgcTgcG242311All0.000005
ORF1ab/nsp12558A558AgcTgcC10361036AY.30.010304
ORF1ab/nsp12558A558AgcTgcC697697B.1.1.4330.992877
ORF1ab/nsp12558A558AgcTgcA180194B.1.1.70.000161
ORF1ab/nsp12558A558AgcTgcC9194B.1.1.70.000008
ORF1ab/nsp12558A558AgcTgcG5194B.1.1.70.000004
ORF1ab/nsp12558A558AgcTgcC6166AY.40.000095
ORF1ab/nsp12558A558AgcTgcG366AY.40.000005
ORF1ab/nsp12558A558AgcTgcA266AY.40.000003
ORF1ab/nsp12558A558AgcTgcA5252AZ.10.0451
ORF1ab/nsp12558A558AgcTgcC2828AY.430.000124
ORF1ab/nsp12558A558AgcTgcC2628B.1.617.20.000098
ORF1ab/nsp12558A558AgcTgcA228B.1.617.20.000008
ORF1ab/nsp12558A558AgcTgcC1920B.1.10.000345
ORF1ab/nsp12558A558AgcTgcA120B.1.10.000018
ORF1ab/nsp12558A558AgcTgcC1717B.1.2580.001131
ORF1ab/nsp12558A558AgcTgcG1315B.1.1770.000171
ORF1ab/nsp12558A558AgcTgcC215B.1.1770.000026
ORF1ab/nsp12558A558AgcTgcC1315B.1.20.000114
ORF1ab/nsp12558A558AgcTgcA215B.1.20.000018
ORF1ab/nsp12558A558AgcTgcC1212AY.1170.001014
ORF1ab/nsp12558A558AgcTgcC1010AY.440.000061
ORF1ab/nsp12558A558AgcTgcC99AY.250.000054
ORF1ab/nsp12558A558AgcTgcC99B.1.2340.001187
ORF1ab/nsp12558A558AgcTgcA89B.1.5250.000905
ORF1ab/nsp12558A558AgcTgcG19B.1.5250.000113
ORF1ab/nsp12558A558AgcTgcC68B.10.000055
ORF1ab/nsp12558A558AgcTgcA28B.10.000018
ORF1ab/nsp12558A558AgcTgcC56AY.390.000124
ORF1ab/nsp12558A558AgcTgcG16AY.390.000025
ORF1ab/nsp12558A558AgcTgcC55P.1.140.000239
ORF1ab/nsp12558A558AgcTgcC44AY.1030.000025
ORF1ab/nsp12558A558AgcTgcC33AY.1000.000138
ORF1ab/nsp12558A558AgcTgcC33AY.20.001068
ORF1ab/nsp12558A558AgcTgcA23AY.470.000062
ORF1ab/nsp12558A558AgcTgcC13AY.470.000031
ORF1ab/nsp12558A558AgcTgcC33AY.50.000062
ORF1ab/nsp12558A558AgcTgcC33B.1.1.1890.004539
ORF1ab/nsp12558A558AgcTgcC220.111111
ORF1ab/nsp12558A558AgcTgcC22AY.1020.000053
ORF1ab/nsp12558A558AgcTgcC22AY.1190.000071
ORF1ab/nsp12558A558AgcTgcC22AY.420.00008
ORF1ab/nsp12558A558AgcTgcA12AY.5.30.000337
ORF1ab/nsp12558A558AgcTgcC12AY.5.30.000337
ORF1ab/nsp12558A558AgcTgcC22AY.75.10.000361
ORF1ab/nsp12558A558AgcTgcA22AY.99.20.000184
ORF1ab/nsp12558A558AgcTgcC22B.1.1.3060.000877
ORF1ab/nsp12558A558AgcTgcC22B.1.1.390.001019
ORF1ab/nsp12558A558AgcTgcC22B.1.160.320.008584
ORF1ab/nsp12558A558AgcTgcC22B.1.3510.000059
ORF1ab/nsp12558A558AgcTgcA22B.1.5960.000174
ORF1ab/nsp12558A558AgcTgcC11AY.1010.00049
ORF1ab/nsp12558A558AgcTgcC11AY.1180.000063
ORF1ab/nsp12558A558AgcTgcA11AY.160.00038
ORF1ab/nsp12558A558AgcTgcC11AY.29.10.000221
ORF1ab/nsp12558A558AgcTgcC11AY.39.10.00004
ORF1ab/nsp12558A558AgcTgcC11AY.4.20.000022
ORF1ab/nsp12558A558AgcTgcC11AY.550.000917
ORF1ab/nsp12558A558AgcTgcC11AY.710.000475
ORF1ab/nsp12558A558AgcTgcC11AY.770.001127
ORF1ab/nsp12558A558AgcTgcC11AY.790.001211
ORF1ab/nsp12558A558AgcTgcC11AY.9.20.000037
ORF1ab/nsp12558A558AgcTgcC11AY.910.00073
ORF1ab/nsp12558A558AgcTgcC11AY.98.10.000048
ORF1ab/nsp12558A558AgcTgcA11B0.000128
ORF1ab/nsp12558A558AgcTgcG11B.1.1.1300.015385
ORF1ab/nsp12558A558AgcTgcC11B.1.1.4150.05
ORF1ab/nsp12558A558AgcTgcC11B.1.1.700.000341
ORF1ab/nsp12558A558AgcTgcC11B.1.177.120.000152
ORF1ab/nsp12558A558AgcTgcC11B.1.2210.000071
ORF1ab/nsp12558A558AgcTgcA11B.1.4160.001269
ORF1ab/nsp12558A558AgcTgcC11B.1.4290.000024
ORF1ab/nsp12558A558AgcTgcA11B.1.4620.007246
ORF1ab/nsp12558A558AgcTgcC11B.1.5170.000427
ORF1ab/nsp12558A558AgcTgcC11B.1.5260.000024
ORF1ab/nsp12558A558AgcTgcC11B.1.5820.000491
ORF1ab/nsp12558A558AgcTgcC11B.1.5990.00365
ORF1ab/nsp12558A558AgcTgcC11B.1.617.10.000129
ORF1ab/nsp12558A558AgcTgcC11B.1.6280.000352
ORF1ab/nsp12558A558AgcTgcA11B.1.6360.006711
ORF1ab/nsp12558A558AgcTgcC11P.10.000016
ORF1ab/nsp12558A558AgcTgcC11P.1.100.000269
ORF1ab/nsp12558A558AgcTgcA11P.1.70.000319