CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCa | gTa | 12796 | 12789 | 0.999453 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCA | gTT | 12796 | 3 | 0.000234448 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCA | gTG | 12796 | 2 | 0.000156299 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCA | gTC | 12796 | 2 | 0.000156299 | 15025-15027 |
Details of the mutation A529V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 12789 | 12796 | All | 0.002446 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTT | 3 | 12796 | All | 0.000001 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTG | 2 | 12796 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTC | 2 | 12796 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2601 | 2601 | B.1.1.7 | 0.002328 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1255 | 1255 | B.1.628 | 0.442213 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 824 | 824 | C.36.3 | 0.467385 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 794 | 794 | AY.120 | 0.02952 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 767 | 767 | AY.103 | 0.004762 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 639 | 639 | AY.4 | 0.000995 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 613 | 613 | AY.64 | 0.364881 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 462 | 462 | B.1.526 | 0.010859 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 445 | 445 | B.1.258 | 0.029613 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 397 | 397 | B.1.617.2 | 0.001495 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 345 | 345 | B.1.2 | 0.003038 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 226 | 226 | B.1 | 0.00207 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 220 | 221 | AY.44 | 0.001339 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTC | 1 | 221 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 191 | 191 | AY.33 | 0.012755 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 184 | 184 | AY.25 | 0.001107 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 141 | 141 | AY.3 | 0.001402 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 140 | 140 | B.1.351 | 0.004162 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 139 | 139 | AY.119 | 0.004908 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 136 | 136 | B.1.466.1 | 0.978417 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 135 | 135 | AY.43 | 0.000598 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 114 | 114 | B.1.243 | 0.007933 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 104 | 104 | AY.41 | 0.03057 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 95 | 95 | AY.29 | 0.001498 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 78 | 78 | P.1 | 0.001229 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 69 | 69 | AY.23 | 0.004813 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 67 | 67 | B.1.1 | 0.001215 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 60 | 60 | AY.47 | 0.001866 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 52 | 52 | AY.20 | 0.002021 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 51 | 51 | B.1.429 | 0.0012 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 50 | 50 | B.1.470 | 0.070225 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 49 | 49 | B.1.438.1 | 0.005256 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 48 | 48 | B.1.1.214 | 0.002662 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 46 | 46 | B.1.1.519 | 0.001827 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 46 | 46 | B.1.623 | 0.024678 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 44 | 44 | AY.120.2.1 | 0.021923 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 44 | 44 | B.1.177.6 | 0.042969 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 42 | 42 | AY.102 | 0.001114 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 42 | 42 | AY.4.2 | 0.000911 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 36 | 36 | AY.39 | 0.00089 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 36 | 36 | C.37 | 0.004178 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 35 | 35 | P.1.7 | 0.011175 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 33 | 33 | B.1.426 | 0.0333 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 30 | 30 | AY.6 | 0.001234 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 24 | 24 | B.1.427 | 0.001212 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 19 | 19 | A.28 | 0.050265 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 19 | 19 | AY.9.2 | 0.000698 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 19 | 19 | B.1.1.58 | 0.102151 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 16 | 16 | C.36 | 0.014572 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 14 | 14 | AY.5.4 | 0.003874 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 14 | 14 | B.1.177.12 | 0.002124 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 12 | 12 | B.1.234 | 0.001583 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.36 | 0.00163 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 10 | 0.222222 | |
ORF1ab/nsp12 | 529 | A529V | gCA | gTT | 3 | 10 | 0.166667 | |
ORF1ab/nsp12 | 529 | A529V | gCA | gTG | 2 | 10 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529V | gCA | gTC | 1 | 10 | 0.055556 | |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 10 | 10 | AY.114 | 0.002311 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | AY.30 | 0.003562 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | AY.90 | 0.00616 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | B.1.128 | 0.005718 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.4.2.1 | 0.001192 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.65 | 0.004264 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.99 | 0.008395 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | Q.2 | 0.004908 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 7 | 7 | B.1.1.525 | 0.038251 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | AY.17 | 0.040984 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B | 0.000639 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B.1.499 | 0.005252 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | A.21 | 0.01108 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.66 | 0.004278 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.279 | 0.002054 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.459 | 0.016327 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.539 | 0.070175 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | C.36.3.1 | 0.01087 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.1.236 | 0.02069 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.177.24 | 0.003886 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.258.3 | 0.005025 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.9.5 | 0.017045 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.253 | 0.005013 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.460 | 0.035714 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.567 | 0.006667 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.573 | 0.012195 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.483 | 0.038462 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.572 | 0.025 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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