CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A4T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp124A4TA4396TnonsynGcaAca511511113451-13453

Details of the mutation A4T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp124A4TGcaAca511511All0.000098
ORF1ab/nsp124A4TGcaAca423423B.1.1.70.000379
ORF1ab/nsp124A4TGcaAca1818AY.40.000028
ORF1ab/nsp124A4TGcaAca1414AY.1030.000087
ORF1ab/nsp124A4TGcaAca1212AY.46.30.011204
ORF1ab/nsp124A4TGcaAca77AY.250.000042
ORF1ab/nsp124A4TGcaAca66B.1.617.20.000023
ORF1ab/nsp124A4TGcaAca44B.1.10.000073
ORF1ab/nsp124A4TGcaAca22AY.1210.000271
ORF1ab/nsp124A4TGcaAca22AY.440.000012
ORF1ab/nsp124A4TGcaAca22B.1.1.1350.00939
ORF1ab/nsp124A4TGcaAca22B.1.1770.000026
ORF1ab/nsp124A4TGcaAca11AY.1050.000643
ORF1ab/nsp124A4TGcaAca11AY.1190.000035
ORF1ab/nsp124A4TGcaAca11AY.30.00001
ORF1ab/nsp124A4TGcaAca11AY.390.000025
ORF1ab/nsp124A4TGcaAca11AY.430.000004
ORF1ab/nsp124A4TGcaAca11AY.450.000122
ORF1ab/nsp124A4TGcaAca11AY.46.60.000072
ORF1ab/nsp124A4TGcaAca11AY.780.001541
ORF1ab/nsp124A4TGcaAca11AY.90.000068
ORF1ab/nsp124A4TGcaAca11B.1.1.2160.00089
ORF1ab/nsp124A4TGcaAca11B.1.1.3750.011905
ORF1ab/nsp124A4TGcaAca11B.1.1420.002899
ORF1ab/nsp124A4TGcaAca11B.1.177.600.000218
ORF1ab/nsp124A4TGcaAca11B.1.177.810.000189
ORF1ab/nsp124A4TGcaAca11B.1.2430.00007
ORF1ab/nsp124A4TGcaAca11B.1.4290.000024
ORF1ab/nsp124A4TGcaAca11B.1.466.20.000391
ORF1ab/nsp124A4TGcaAca11B.1.6200.000946
ORF1ab/nsp124A4TGcaAca11B.1.6370.000073

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.