CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A46S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1246A46SA4438SnonsynGctTct946946113576-13578

Details of the mutation A46S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1246A46SGctTct946946All0.000181
ORF1ab/nsp1246A46SGctTct307307B.1.1.5190.012191
ORF1ab/nsp1246A46SGctTct111111B.1.617.20.000418
ORF1ab/nsp1246A46SGctTct6363AY.40.000098
ORF1ab/nsp1246A46SGctTct4444B.1.1.70.000039
ORF1ab/nsp1246A46SGctTct3535AY.610.003667
ORF1ab/nsp1246A46SGctTct3333B.1.10.000599
ORF1ab/nsp1246A46SGctTct3131AY.140.002728
ORF1ab/nsp1246A46SGctTct2626AY.1030.000161
ORF1ab/nsp1246A46SGctTct2525AY.250.00015
ORF1ab/nsp1246A46SGctTct2424AY.30.000239
ORF1ab/nsp1246A46SGctTct2424B.1.177.210.001835
ORF1ab/nsp1246A46SGctTct1616AY.75.10.002885
ORF1ab/nsp1246A46SGctTct1616B.10.000147
ORF1ab/nsp1246A46SGctTct1414B.1.1770.000184
ORF1ab/nsp1246A46SGctTct1414P.10.000221
ORF1ab/nsp1246A46SGctTct1313B.1.1.3500.52
ORF1ab/nsp1246A46SGctTct1212AY.200.000466
ORF1ab/nsp1246A46SGctTct1111AY.290.000174
ORF1ab/nsp1246A46SGctTct1111AY.390.000272
ORF1ab/nsp1246A46SGctTct1010AY.90.000676
ORF1ab/nsp1246A46SGctTct1010B.1.5170.00427
ORF1ab/nsp1246A46SGctTct99AY.440.000055
ORF1ab/nsp1246A46SGctTct88AY.430.000035
ORF1ab/nsp1246A46SGctTct66AY.270.000388
ORF1ab/nsp1246A46SGctTct55AY.50.000103
ORF1ab/nsp1246A46SGctTct55B.1.20.000044
ORF1ab/nsp1246A46SGctTct55B.1.5960.000436
ORF1ab/nsp1246A46SGctTct44AY.710.0019
ORF1ab/nsp1246A46SGctTct44AY.9.20.000147
ORF1ab/nsp1246A46SGctTct44B.1.1.1710.014706
ORF1ab/nsp1246A46SGctTct33AY.1020.00008
ORF1ab/nsp1246A46SGctTct33AY.1200.000112
ORF1ab/nsp1246A46SGctTct33AY.450.000365
ORF1ab/nsp1246A46SGctTct33B.1.5300.021429
ORF1ab/nsp1246A46SGctTct22AY.1210.000271
ORF1ab/nsp1246A46SGctTct22AY.3.10.000171
ORF1ab/nsp1246A46SGctTct22AY.320.001065
ORF1ab/nsp1246A46SGctTct110.055556
ORF1ab/nsp1246A46SGctTct11AY.1100.000113
ORF1ab/nsp1246A46SGctTct11AY.1190.000035
ORF1ab/nsp1246A46SGctTct11AY.420.00004
ORF1ab/nsp1246A46SGctTct11AY.530.000288
ORF1ab/nsp1246A46SGctTct11AY.590.00053
ORF1ab/nsp1246A46SGctTct11AY.60.000041
ORF1ab/nsp1246A46SGctTct11AY.680.000274
ORF1ab/nsp1246A46SGctTct11AY.70.000196
ORF1ab/nsp1246A46SGctTct11AY.770.001127
ORF1ab/nsp1246A46SGctTct11AY.880.000884
ORF1ab/nsp1246A46SGctTct11AY.980.000079
ORF1ab/nsp1246A46SGctTct11B.1.1.2140.000055
ORF1ab/nsp1246A46SGctTct11B.1.1.630.000386
ORF1ab/nsp1246A46SGctTct11B.1.177.320.00135
ORF1ab/nsp1246A46SGctTct11B.1.177.50.001242
ORF1ab/nsp1246A46SGctTct11B.1.177.650.000665
ORF1ab/nsp1246A46SGctTct11B.1.2060.000816
ORF1ab/nsp1246A46SGctTct11B.1.3510.00003
ORF1ab/nsp1246A46SGctTct11B.1.360.000146
ORF1ab/nsp1246A46SGctTct11B.1.3800.006623
ORF1ab/nsp1246A46SGctTct11B.1.466.20.000391
ORF1ab/nsp1246A46SGctTct11B.1.5250.000113
ORF1ab/nsp1246A46SGctTct11B.1.5330.009615
ORF1ab/nsp1246A46SGctTct11B.1.5760.000907
ORF1ab/nsp1246A46SGctTct11B.1.617.10.000129
ORF1ab/nsp1246A46SGctTct11B.1.88.10.004808
ORF1ab/nsp1246A46SGctTct11P.20.000187