CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A449S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12449A449SA4841SnonsynGctTct2582560.99224814785-14787
ORF1ab/nsp12449A449SA4841SnonsynGCtAGt25820.0077519414785-14787

Details of the mutation A449S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12449A449SGctTct256258All0.000049
ORF1ab/nsp12449A449SGCtAGt2258All0
ORF1ab/nsp12449A449SGctTct8181AY.40.000126
ORF1ab/nsp12449A449SGctTct7171B.1.617.20.000267
ORF1ab/nsp12449A449SGctTct1111AY.430.000049
ORF1ab/nsp12449A449SGctTct1010AY.440.000061
ORF1ab/nsp12449A449SGctTct88B.1.1.70.000007
ORF1ab/nsp12449A449SGctTct77AY.470.000218
ORF1ab/nsp12449A449SGctTct66B.1.2580.000399
ORF1ab/nsp12449A449SGctTct55AY.50.000103
ORF1ab/nsp12449A449SGctTct55AY.75.10.000902
ORF1ab/nsp12449A449SGctTct44AY.1020.000106
ORF1ab/nsp12449A449SGctTct44AY.610.000419
ORF1ab/nsp12449A449SGctTct33AY.39.1.10.002174
ORF1ab/nsp12449A449SGctTct33AY.420.000121
ORF1ab/nsp12449A449SGctTct33B.10.000027
ORF1ab/nsp12449A449SGctTct33B.1.3980.008929
ORF1ab/nsp12449A449SGctTct22B.1.177.720.00678
ORF1ab/nsp12449A449SGctTct12B.1.20.000009
ORF1ab/nsp12449A449SGCtAGt12B.1.20.000009
ORF1ab/nsp12449A449SGctTct22P.10.000032
ORF1ab/nsp12449A449SGctTct110.055556
ORF1ab/nsp12449A449SGctTct11AY.1000.000046
ORF1ab/nsp12449A449SGctTct11AY.1170.000085
ORF1ab/nsp12449A449SGctTct11AY.1180.000063
ORF1ab/nsp12449A449SGctTct11AY.1200.000037
ORF1ab/nsp12449A449SGctTct11AY.190.00114
ORF1ab/nsp12449A449SGctTct11AY.200.000039
ORF1ab/nsp12449A449SGctTct11AY.250.000006
ORF1ab/nsp12449A449SGctTct11AY.390.000025
ORF1ab/nsp12449A449SGctTct11AY.39.10.00004
ORF1ab/nsp12449A449SGctTct11AY.400.000964
ORF1ab/nsp12449A449SGctTct11AY.46.60.000072
ORF1ab/nsp12449A449SGctTct11AY.650.000533
ORF1ab/nsp12449A449SGctTct11AY.680.000274
ORF1ab/nsp12449A449SGctTct11AY.920.000287
ORF1ab/nsp12449A449SGctTct11B.1.1.2740.005051
ORF1ab/nsp12449A449SGctTct11B.1.1.340.013158
ORF1ab/nsp12449A449SGctTct11B.1.1770.000013
ORF1ab/nsp12449A449SGctTct11B.1.2400.000216
ORF1ab/nsp12449A449SGctTct11B.1.2430.00007
ORF1ab/nsp12449A449SGctTct11B.1.30.002618
ORF1ab/nsp12449A449SGctTct11B.1.36.170.000494
ORF1ab/nsp12449A449SGctTct11B.1.36.290.000517
ORF1ab/nsp12449A449SGCtAGt11B.1.3770.004566
ORF1ab/nsp12449A449SGctTct11B.1.3960.000706
ORF1ab/nsp12449A449SGctTct11D.20.000075
ORF1ab/nsp12449A449SGctTct11P.20.000187
ORF1ab/nsp12449A449SGctTct11Q.80.000165