CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A382A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12382A382AA4774AsyngcTgcC4462750.61659214584-14586
ORF1ab/nsp12382A382AA4774AsyngcTgcA4461550.34753414584-14586
ORF1ab/nsp12382A382AA4774AsyngcTgcG446160.035874414584-14586

Details of the mutation A382A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12382A382AgcTgcC275446All0.000053
ORF1ab/nsp12382A382AgcTgcA155446All0.00003
ORF1ab/nsp12382A382AgcTgcG16446All0.000003
ORF1ab/nsp12382A382AgcTgcC133183B.1.1.70.000119
ORF1ab/nsp12382A382AgcTgcA50183B.1.1.70.000045
ORF1ab/nsp12382A382AgcTgcC1825AY.40.000028
ORF1ab/nsp12382A382AgcTgcA725AY.40.000011
ORF1ab/nsp12382A382AgcTgcA1121B.1.617.20.000041
ORF1ab/nsp12382A382AgcTgcC1021B.1.617.20.000038
ORF1ab/nsp12382A382AgcTgcG1415B.1.2210.000994
ORF1ab/nsp12382A382AgcTgcC115B.1.2210.000071
ORF1ab/nsp12382A382AgcTgcA1314AY.1030.000081
ORF1ab/nsp12382A382AgcTgcC114AY.1030.000006
ORF1ab/nsp12382A382AgcTgcA812AY.250.000048
ORF1ab/nsp12382A382AgcTgcC412AY.250.000024
ORF1ab/nsp12382A382AgcTgcA1212B.1.1770.000158
ORF1ab/nsp12382A382AgcTgcC1111B.1.1.3170.004529
ORF1ab/nsp12382A382AgcTgcC910B.1.1.5190.000357
ORF1ab/nsp12382A382AgcTgcA110B.1.1.5190.00004
ORF1ab/nsp12382A382AgcTgcA910B.1.4290.000212
ORF1ab/nsp12382A382AgcTgcC110B.1.4290.000024
ORF1ab/nsp12382A382AgcTgcA59B.1.20.000044
ORF1ab/nsp12382A382AgcTgcC49B.1.20.000035
ORF1ab/nsp12382A382AgcTgcC89B.1.5250.000905
ORF1ab/nsp12382A382AgcTgcG19B.1.5250.000113
ORF1ab/nsp12382A382AgcTgcC67AY.30.00006
ORF1ab/nsp12382A382AgcTgcA17AY.30.00001
ORF1ab/nsp12382A382AgcTgcA66AY.1140.001387
ORF1ab/nsp12382A382AgcTgcC55AY.1020.000133
ORF1ab/nsp12382A382AgcTgcC55AY.390.000124
ORF1ab/nsp12382A382AgcTgcC45AY.440.000024
ORF1ab/nsp12382A382AgcTgcA15AY.440.000006
ORF1ab/nsp12382A382AgcTgcC55AY.610.000524
ORF1ab/nsp12382A382AgcTgcC45B.10.000037
ORF1ab/nsp12382A382AgcTgcA15B.10.000009
ORF1ab/nsp12382A382AgcTgcC35B.1.3510.000089
ORF1ab/nsp12382A382AgcTgcA25B.1.3510.000059
ORF1ab/nsp12382A382AgcTgcC45P.10.000063
ORF1ab/nsp12382A382AgcTgcA15P.10.000016
ORF1ab/nsp12382A382AgcTgcC24B.1.10.000036
ORF1ab/nsp12382A382AgcTgcA24B.1.10.000036
ORF1ab/nsp12382A382AgcTgcA34B.1.1.2220.000612
ORF1ab/nsp12382A382AgcTgcC14B.1.1.2220.000204
ORF1ab/nsp12382A382AgcTgcC44B.1.360.000584
ORF1ab/nsp12382A382AgcTgcA23P.1.140.000096
ORF1ab/nsp12382A382AgcTgcG13P.1.140.000048
ORF1ab/nsp12382A382AgcTgcC22AY.1160.000574
ORF1ab/nsp12382A382AgcTgcC22AY.116.10.000623
ORF1ab/nsp12382A382AgcTgcA22AY.1190.000071
ORF1ab/nsp12382A382AgcTgcA22AY.20.000712
ORF1ab/nsp12382A382AgcTgcC12AY.430.000004
ORF1ab/nsp12382A382AgcTgcA12AY.430.000004
ORF1ab/nsp12382A382AgcTgcC22AY.46.40.000329
ORF1ab/nsp12382A382AgcTgcC22AY.50.000041
ORF1ab/nsp12382A382AgcTgcC22AY.500.001599
ORF1ab/nsp12382A382AgcTgcA22AY.510.001818
ORF1ab/nsp12382A382AgcTgcA22AY.540.000191
ORF1ab/nsp12382A382AgcTgcC22AY.700.000417
ORF1ab/nsp12382A382AgcTgcC22AY.840.000875
ORF1ab/nsp12382A382AgcTgcC22B.1.1110.00235
ORF1ab/nsp12382A382AgcTgcA12B.1.4270.00005
ORF1ab/nsp12382A382AgcTgcC12B.1.4270.00005
ORF1ab/nsp12382A382AgcTgcC11AD.20.000219
ORF1ab/nsp12382A382AgcTgcC11AY.1210.000135
ORF1ab/nsp12382A382AgcTgcC11AY.160.00038
ORF1ab/nsp12382A382AgcTgcC11AY.200.000039
ORF1ab/nsp12382A382AgcTgcA11AY.350.000233
ORF1ab/nsp12382A382AgcTgcA11AY.470.000031
ORF1ab/nsp12382A382AgcTgcA11AY.60.000041
ORF1ab/nsp12382A382AgcTgcC11B0.000128
ORF1ab/nsp12382A382AgcTgcC11B.1.1.3340.016393
ORF1ab/nsp12382A382AgcTgcC11B.1.1.410.006329
ORF1ab/nsp12382A382AgcTgcC11B.1.1.4480.002033
ORF1ab/nsp12382A382AgcTgcA11B.1.177.60.000977
ORF1ab/nsp12382A382AgcTgcA11B.1.2580.000067
ORF1ab/nsp12382A382AgcTgcC11B.1.2680.010417
ORF1ab/nsp12382A382AgcTgcC11B.1.3360.002439
ORF1ab/nsp12382A382AgcTgcA11B.1.3600.012658
ORF1ab/nsp12382A382AgcTgcC11B.1.4530.003236
ORF1ab/nsp12382A382AgcTgcA11B.1.466.20.000391
ORF1ab/nsp12382A382AgcTgcC11B.1.5510.00129
ORF1ab/nsp12382A382AgcTgcA11B.1.5760.000907
ORF1ab/nsp12382A382AgcTgcA11B.1.6000.005848
ORF1ab/nsp12382A382AgcTgcC11B.1.6360.006711
ORF1ab/nsp12382A382AgcTgcA11Q.40.000455
ORF1ab/nsp12382A382AgcTgcC11R.10.00009