CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = A379V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12379A379VA4771VnonsyngCtgTt181618150.99944914575-14577
ORF1ab/nsp12379A379VA4771VnonsyngCTgTC181610.00055066114575-14577

Details of the mutation A379V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12379A379VgCtgTt18151816All0.000347
ORF1ab/nsp12379A379VgCTgTC11816All0
ORF1ab/nsp12379A379VgCtgTt248248AY.40.000386
ORF1ab/nsp12379A379VgCtgTt204204B.1.1.70.000183
ORF1ab/nsp12379A379VgCtgTt153153AY.250.00092
ORF1ab/nsp12379A379VgCtgTt116116AY.1020.003076
ORF1ab/nsp12379A379VgCtgTt108108B.1.617.20.000407
ORF1ab/nsp12379A379VgCtgTt9393B.1.6030.989362
ORF1ab/nsp12379A379VgCtgTt7979AY.570.051837
ORF1ab/nsp12379A379VgCtgTt7474B.1.20.000652
ORF1ab/nsp12379A379VgCtgTt5252AY.430.00023
ORF1ab/nsp12379A379VgCtgTt4444AY.440.000268
ORF1ab/nsp12379A379VgCtgTt4242AY.30.000418
ORF1ab/nsp12379A379VgCtgTt4141B.10.000376
ORF1ab/nsp12379A379VgCtgTt3535B.1.2650.044473
ORF1ab/nsp12379A379VgCtgTt2525AY.1000.00115
ORF1ab/nsp12379A379VgCtgTt2424AY.99.20.002212
ORF1ab/nsp12379A379VgCtgTt2424B.1.5260.000564
ORF1ab/nsp12379A379VgCtgTt2222AY.1030.000137
ORF1ab/nsp12379A379VgCtgTt2222AY.3.10.001876
ORF1ab/nsp12379A379VgCtgTt2222B.1.10.000399
ORF1ab/nsp12379A379VgCtgTt2121P.20.003919
ORF1ab/nsp12379A379VgCtgTt1818AY.290.000284
ORF1ab/nsp12379A379VgCtgTt1818AY.390.000445
ORF1ab/nsp12379A379VgCtgTt1616B.1.4290.000376
ORF1ab/nsp12379A379VgCtgTt1414B.1.1.3160.012951
ORF1ab/nsp12379A379VgCtgTt1213B.1.1770.000158
ORF1ab/nsp12379A379VgCTgTC113B.1.1770.000013
ORF1ab/nsp12379A379VgCtgTt1111AY.190.012543
ORF1ab/nsp12379A379VgCtgTt1111B.1.1.4340.003834
ORF1ab/nsp12379A379VgCtgTt99AY.1130.001282
ORF1ab/nsp12379A379VgCtgTt99B.1.5950.002349
ORF1ab/nsp12379A379VgCtgTt88AY.50.000165
ORF1ab/nsp12379A379VgCtgTt88B.1.4270.000404
ORF1ab/nsp12379A379VgCtgTt77AY.1060.002344
ORF1ab/nsp12379A379VgCtgTt77AY.420.000282
ORF1ab/nsp12379A379VgCtgTt66AY.450.00073
ORF1ab/nsp12379A379VgCtgTt66D.20.00045
ORF1ab/nsp12379A379VgCtgTt66P.10.000095
ORF1ab/nsp12379A379VgCtgTt55AY.330.000334
ORF1ab/nsp12379A379VgCtgTt55B.1.1.2140.000277
ORF1ab/nsp12379A379VgCtgTt55B.1.1600.000156
ORF1ab/nsp12379A379VgCtgTt55B.1.177.870.003639
ORF1ab/nsp12379A379VgCtgTt44AY.1180.000251
ORF1ab/nsp12379A379VgCtgTt44AY.1190.000141
ORF1ab/nsp12379A379VgCtgTt44AY.1200.000149
ORF1ab/nsp12379A379VgCtgTt44AY.39.10.000158
ORF1ab/nsp12379A379VgCtgTt44AY.4.20.000087
ORF1ab/nsp12379A379VgCtgTt44AY.460.000416
ORF1ab/nsp12379A379VgCtgTt44AY.790.004843
ORF1ab/nsp12379A379VgCtgTt44AY.98.10.000194
ORF1ab/nsp12379A379VgCtgTt33AY.230.000209
ORF1ab/nsp12379A379VgCtgTt33AY.260.000085
ORF1ab/nsp12379A379VgCtgTt33AY.4.30.002525
ORF1ab/nsp12379A379VgCtgTt33AY.470.000093
ORF1ab/nsp12379A379VgCtgTt33AY.90.000203
ORF1ab/nsp12379A379VgCtgTt33B.1.1.3180.000905
ORF1ab/nsp12379A379VgCtgTt33B.1.1.5190.000119
ORF1ab/nsp12379A379VgCtgTt33B.1.177.860.00055
ORF1ab/nsp12379A379VgCtgTt33B.1.2340.000396
ORF1ab/nsp12379A379VgCtgTt33B.1.36.390.006652
ORF1ab/nsp12379A379VgCtgTt33B.1.5250.000339
ORF1ab/nsp12379A379VgCtgTt22AY.1110.000366
ORF1ab/nsp12379A379VgCtgTt22AY.1140.000462
ORF1ab/nsp12379A379VgCtgTt22AY.1170.000169
ORF1ab/nsp12379A379VgCtgTt22AY.140.000176
ORF1ab/nsp12379A379VgCtgTt22AY.220.004184
ORF1ab/nsp12379A379VgCtgTt22AY.270.000129
ORF1ab/nsp12379A379VgCtgTt22AY.4.50.000215
ORF1ab/nsp12379A379VgCtgTt22AY.46.60.000144
ORF1ab/nsp12379A379VgCtgTt22AY.540.000191
ORF1ab/nsp12379A379VgCtgTt22AY.590.001059
ORF1ab/nsp12379A379VgCtgTt22AY.750.000112
ORF1ab/nsp12379A379VgCtgTt22B.1.1.250.001137
ORF1ab/nsp12379A379VgCtgTt22B.1.1.280.000622
ORF1ab/nsp12379A379VgCtgTt22B.1.177.440.001038
ORF1ab/nsp12379A379VgCtgTt22B.1.177.540.001213
ORF1ab/nsp12379A379VgCtgTt22B.1.177.600.000437
ORF1ab/nsp12379A379VgCtgTt22B.1.2210.000142
ORF1ab/nsp12379A379VgCtgTt22B.1.2400.000431
ORF1ab/nsp12379A379VgCtgTt22B.1.258.170.000208
ORF1ab/nsp12379A379VgCtgTt22B.1.36.290.001035
ORF1ab/nsp12379A379VgCtgTt22B.1.5610.000794
ORF1ab/nsp12379A379VgCtgTt22B.1.5960.000174
ORF1ab/nsp12379A379VgCtgTt22B.1.617.10.000258
ORF1ab/nsp12379A379VgCtgTt22B.1.6190.001742
ORF1ab/nsp12379A379VgCtgTt22B.1.6210.000177
ORF1ab/nsp12379A379VgCtgTt22B.1.6370.000146
ORF1ab/nsp12379A379VgCtgTt22B.400.000729
ORF1ab/nsp12379A379VgCtgTt22C.370.000232
ORF1ab/nsp12379A379VgCtgTt22Q.40.00091
ORF1ab/nsp12379A379VgCtgTt11AY.1070.000466
ORF1ab/nsp12379A379VgCtgTt11AY.1160.000287
ORF1ab/nsp12379A379VgCtgTt11AY.120.10.000321
ORF1ab/nsp12379A379VgCtgTt11AY.1210.000135
ORF1ab/nsp12379A379VgCtgTt11AY.200.000039
ORF1ab/nsp12379A379VgCtgTt11AY.46.20.000635
ORF1ab/nsp12379A379VgCtgTt11AY.46.40.000165
ORF1ab/nsp12379A379VgCtgTt11AY.46.50.000198
ORF1ab/nsp12379A379VgCtgTt11AY.480.000465
ORF1ab/nsp12379A379VgCtgTt11AY.530.000288
ORF1ab/nsp12379A379VgCtgTt11AY.580.000907
ORF1ab/nsp12379A379VgCtgTt11AY.60.000041
ORF1ab/nsp12379A379VgCtgTt11AY.610.000105
ORF1ab/nsp12379A379VgCtgTt11AY.80.000606
ORF1ab/nsp12379A379VgCtgTt11AY.930.000273
ORF1ab/nsp12379A379VgCtgTt11AZ.30.00152
ORF1ab/nsp12379A379VgCtgTt11B0.000128
ORF1ab/nsp12379A379VgCtgTt11B.1.1.10.000327
ORF1ab/nsp12379A379VgCtgTt11B.1.1.1890.001513
ORF1ab/nsp12379A379VgCtgTt11B.1.1.1920.002309
ORF1ab/nsp12379A379VgCtgTt11B.1.1.2510.007937
ORF1ab/nsp12379A379VgCtgTt11B.1.1.2580.003257
ORF1ab/nsp12379A379VgCtgTt11B.1.1.2650.003155
ORF1ab/nsp12379A379VgCtgTt11B.1.1.2840.000107
ORF1ab/nsp12379A379VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp12379A379VgCtgTt11B.1.1.3260.001761
ORF1ab/nsp12379A379VgCtgTt11B.1.1.330.000421
ORF1ab/nsp12379A379VgCtgTt11B.1.1.370.000193
ORF1ab/nsp12379A379VgCtgTt11B.1.1.3850.004464
ORF1ab/nsp12379A379VgCtgTt11B.1.1040.00369
ORF1ab/nsp12379A379VgCtgTt11B.1.177.430.001477
ORF1ab/nsp12379A379VgCtgTt11B.1.177.90.001332
ORF1ab/nsp12379A379VgCtgTt11B.1.2360.002053
ORF1ab/nsp12379A379VgCtgTt11B.1.2430.00007
ORF1ab/nsp12379A379VgCtgTt11B.1.2580.000067
ORF1ab/nsp12379A379VgCtgTt11B.1.2790.000514
ORF1ab/nsp12379A379VgCtgTt11B.1.3200.001245
ORF1ab/nsp12379A379VgCtgTt11B.1.3500.002933
ORF1ab/nsp12379A379VgCtgTt11B.1.3510.00003
ORF1ab/nsp12379A379VgCtgTt11B.1.360.000146
ORF1ab/nsp12379A379VgCtgTt11B.1.36.10.00114
ORF1ab/nsp12379A379VgCtgTt11B.1.3810.007812
ORF1ab/nsp12379A379VgCtgTt11B.1.4000.000429
ORF1ab/nsp12379A379VgCtgTt11B.1.4220.000812
ORF1ab/nsp12379A379VgCtgTt11B.1.517.10.005263
ORF1ab/nsp12379A379VgCtgTt11B.1.5600.00463
ORF1ab/nsp12379A379VgCtgTt11B.1.5660.019231
ORF1ab/nsp12379A379VgCtgTt11B.1.5750.000303
ORF1ab/nsp12379A379VgCtgTt11B.1.6060.006024
ORF1ab/nsp12379A379VgCtgTt11B.1.6100.003546
ORF1ab/nsp12379A379VgCtgTt11B.1.6280.000352
ORF1ab/nsp12379A379VgCtgTt11B.390.002331
ORF1ab/nsp12379A379VgCtgTt11C.36.30.000567
ORF1ab/nsp12379A379VgCtgTt11P.1.150.000232
ORF1ab/nsp12379A379VgCtgTt11Q.10.000126
ORF1ab/nsp12379A379VgCtgTt11Q.80.000165
ORF1ab/nsp12379A379VgCtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.