CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 97

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1297A97VA4489VnonsyngCtgTt11008110070.99990913729-13731
ORF1ab/nsp1297A97VA4489VnonsyngCTgTC1100810.00009084313729-13731
ORF1ab/nsp1297A97AA4489AsyngcTgcC3072620.8534213729-13731
ORF1ab/nsp1297A97AA4489AsyngcTgcA307400.13029313729-13731
ORF1ab/nsp1297A97AA4489AsyngcTgcG30750.016286613729-13731
ORF1ab/nsp1297A97SA4489SnonsynGctTct1201190.99166713729-13731
ORF1ab/nsp1297A97SA4489SnonsynGCTAGC12010.0083333313729-13731
ORF1ab/nsp1297A97TA4489TnonsynGctAct83810.97590413729-13731
ORF1ab/nsp1297A97TA4489TnonsynGcTAcA8320.024096413729-13731
ORF1ab/nsp1297A97delA4489deldelGCT---5050113729-13731
ORF1ab/nsp1297A97PA4489PnonsynGctCct1111113729-13731
ORF1ab/nsp1297A97GA4489GnonsyngCtgGt66113729-13731
ORF1ab/nsp1297A97DA4489DnonsyngCtgAt44113729-13731
ORF1ab/nsp1297A97del1A4489del1delGct-ct33113729-13731
ORF1ab/nsp1297A97EA4489EnonsyngCTgAG320.66666713729-13731
ORF1ab/nsp1297A97EA4489EnonsyngCTgAA310.33333313729-13731
ORF1ab/nsp1297A97del2A4489del2delGCt--t11113729-13731
ORF1ab/nsp1297A97KA4489KnonsynGCTAAG11113729-13731
ORF1ab/nsp1297A97CA4489CnonsynGCtTGt11113729-13731

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1297A97VgCtgTt1100711008All0.002105
ORF1ab/nsp1297A97VgCTgTC111008All0
ORF1ab/nsp1297A97VgCtgTt31853185B.1.1.70.002851
ORF1ab/nsp1297A97VgCtgTt11061106B.6.60.983111
ORF1ab/nsp1297A97VgCtgTt10691069B.60.972702
ORF1ab/nsp1297A97VgCtgTt576576AY.430.002552
ORF1ab/nsp1297A97VgCtgTt461461B.1.20.004059
ORF1ab/nsp1297A97VgCtgTt456456B.1.10.008272
ORF1ab/nsp1297A97AgcTgcC262307All0.00005
ORF1ab/nsp1297A97AgcTgcA40307All0.000008
ORF1ab/nsp1297A97AgcTgcG5307All0.000001
ORF1ab/nsp1297A97VgCtgTt249249B.1.1040.918819
ORF1ab/nsp1297A97VgCtgTt241241AY.40.000375
ORF1ab/nsp1297A97VgCtgTt229230B.1.617.20.000862
ORF1ab/nsp1297A97VgCTgTC1230B.1.617.20.000004
ORF1ab/nsp1297A97VgCtgTt203203AY.4.20.004403
ORF1ab/nsp1297A97VgCtgTt183183B.10.001676
ORF1ab/nsp1297A97VgCtgTt163163AY.30.001621
ORF1ab/nsp1297A97VgCtgTt139139AY.1170.011748
ORF1ab/nsp1297A97VgCtgTt121121B.6.81
ORF1ab/nsp1297A97SGctTct119120All0.000023
ORF1ab/nsp1297A97SGCTAGC1120All0
ORF1ab/nsp1297A97VgCtgTt106106AY.420.004264
ORF1ab/nsp1297A97VgCtgTt9999AY.7.20.055369
ORF1ab/nsp1297A97VgCtgTt9595AY.1020.002519
ORF1ab/nsp1297A97VgCtgTt8484AY.4.50.009029
ORF1ab/nsp1297A97TGctAct8183All0.000015
ORF1ab/nsp1297A97TGcTAcA283All0
ORF1ab/nsp1297A97VgCtgTt7878AY.98.10.003778
ORF1ab/nsp1297A97VgCtgTt7373AY.260.002067
ORF1ab/nsp1297A97VgCtgTt7171AY.340.006885
ORF1ab/nsp1297A97VgCtgTt6868Q.80.011214
ORF1ab/nsp1297A97VgCtgTt6666AY.610.006915
ORF1ab/nsp1297A97VgCtgTt6363B.1.1770.00083
ORF1ab/nsp1297A97VgCtgTt6262AY.440.000377
ORF1ab/nsp1297A97VgCtgTt6262AY.46.10.063655
ORF1ab/nsp1297A97VgCtgTt5757AY.390.001409
ORF1ab/nsp1297A97VgCtgTt5555AY.1030.000341
ORF1ab/nsp1297A97VgCtgTt5252AY.250.000313
ORF1ab/nsp1297A97VgCtgTt5252B.1.4290.001224
ORF1ab/nsp1297A97AgcTgcC5151AY.440.00031
ORF1ab/nsp1297A97VgCtgTt5151B.1.2210.003623
ORF1ab/nsp1297A97delGCT---5050All0.00001
ORF1ab/nsp1297A97VgCtgTt4848AY.470.001493
ORF1ab/nsp1297A97VgCtgTt4242B.1.1.10.013721
ORF1ab/nsp1297A97VgCtgTt4040AY.460.004163
ORF1ab/nsp1297A97VgCtgTt3939B.1.1.5190.001549
ORF1ab/nsp1297A97VgCtgTt3838B.6.11
ORF1ab/nsp1297A97VgCtgTt3838B.6.31
ORF1ab/nsp1297A97VgCtgTt3737A.23.10.026056
ORF1ab/nsp1297A97AgcTgcC3535B.1.6210.003098
ORF1ab/nsp1297A97SGctTct3434AY.40.000053
ORF1ab/nsp1297A97VgCtgTt3333AY.5.40.009131
ORF1ab/nsp1297A97VgCtgTt3232AY.710.015202
ORF1ab/nsp1297A97VgCtgTt3030B.1.4270.001515
ORF1ab/nsp1297A97VgCtgTt2727AY.330.001803
ORF1ab/nsp1297A97VgCtgTt2626B0.003323
ORF1ab/nsp1297A97VgCtgTt2525B.1.4311
ORF1ab/nsp1297A97VgCtgTt2525W.40.033784
ORF1ab/nsp1297A97VgCtgTt2323AY.200.000894
ORF1ab/nsp1297A97VgCtgTt2222B.1.1640.328358
ORF1ab/nsp1297A97AgcTgcC2022B.1.20.000176
ORF1ab/nsp1297A97AgcTgcA222B.1.20.000018
ORF1ab/nsp1297A97VgCtgTt2222B.1.6370.001608
ORF1ab/nsp1297A97VgCtgTt2222B.6.41
ORF1ab/nsp1297A97VgCtgTt2121B.1.5250.002376
ORF1ab/nsp1297A97VgCtgTt2020P.10.000315
ORF1ab/nsp1297A97VgCtgTt1919AY.75.10.003426
ORF1ab/nsp1297A97VgCtgTt1919B.1.1.500.012899
ORF1ab/nsp1297A97VgCtgTt1919B.1.3510.000565
ORF1ab/nsp1297A97VgCtgTt1919B.1.5260.000447
ORF1ab/nsp1297A97AgcTgcC1919P.1.140.000908
ORF1ab/nsp1297A97AgcTgcC1018B.1.1.70.000009
ORF1ab/nsp1297A97AgcTgcG418B.1.1.70.000004
ORF1ab/nsp1297A97AgcTgcA418B.1.1.70.000004
ORF1ab/nsp1297A97VgCtgTt1818B.1.2790.009245
ORF1ab/nsp1297A97VgCtgTt1717AY.9.20.000624
ORF1ab/nsp1297A97VgCtgTt1717P.1.10.0054
ORF1ab/nsp1297A97VgCtgTt1616AY.1000.000736
ORF1ab/nsp1297A97AgcTgcA1316B.10.000119
ORF1ab/nsp1297A97AgcTgcC316B.10.000027
ORF1ab/nsp1297A97AgcTgcC1316B.1.5960.001133
ORF1ab/nsp1297A97AgcTgcA316B.1.5960.000261
ORF1ab/nsp1297A97VgCtgTt1616B.6.21
ORF1ab/nsp1297A97VgCtgTt1616C.36.30.009075
ORF1ab/nsp1297A97VgCtgTt1515B.1.1.1570.013699
ORF1ab/nsp1297A97TGctAct1515B.1.2320.00806
ORF1ab/nsp1297A97VgCtgTt1515C.370.001741
ORF1ab/nsp1297A97VgCtgTt1414AY.46.60.001011
ORF1ab/nsp1297A97TGctAct1313AY.430.000058
ORF1ab/nsp1297A97VgCtgTt1313AY.60.000535
ORF1ab/nsp1297A97VgCtgTt1313AY.9.10.001088
ORF1ab/nsp1297A97TGctAct1313B.1.617.20.000049
ORF1ab/nsp1297A97VgCtgTt1313B.6.51
ORF1ab/nsp1297A97VgCtgTt1212AY.1180.000752
ORF1ab/nsp1297A97VgCtgTt1212AY.1190.000424
ORF1ab/nsp1297A97VgCtgTt1212AY.1200.000446
ORF1ab/nsp1297A97AgcTgcC1212AY.250.000072
ORF1ab/nsp1297A97AgcTgcC1012AY.40.000016
ORF1ab/nsp1297A97AgcTgcA212AY.40.000003
ORF1ab/nsp1297A97VgCtgTt1212AY.410.003527
ORF1ab/nsp1297A97VgCtgTt1212AY.530.00345
ORF1ab/nsp1297A97PGctCct1111All0.000002
ORF1ab/nsp1297A97VgCtgTt1111AY.290.000174
ORF1ab/nsp1297A97AgcTgcC1111AY.30.000109
ORF1ab/nsp1297A97SGctTct1111B.1.1.70.00001
ORF1ab/nsp1297A97VgCtgTt1111B.1.360.001605
ORF1ab/nsp1297A97VgCtgTt1010AY.1060.003349
ORF1ab/nsp1297A97VgCtgTt1010AY.1140.002311
ORF1ab/nsp1297A97VgCtgTt1010B.1.2340.001319
ORF1ab/nsp1297A97VgCtgTt1010B.1.2430.000696
ORF1ab/nsp1297A97VgCtgTt1010B.1.36.100.047847
ORF1ab/nsp1297A97VgCtgTt99AY.620.003922
ORF1ab/nsp1297A97VgCtgTt99AY.680.002464
ORF1ab/nsp1297A97VgCtgTt99AY.700.001877
ORF1ab/nsp1297A97VgCtgTt99AY.90.000608
ORF1ab/nsp1297A97AgcTgcA69B.1.10.000109
ORF1ab/nsp1297A97AgcTgcC39B.1.10.000054
ORF1ab/nsp1297A97TGctAct99B.1.1.70.000008
ORF1ab/nsp1297A97VgCtgTt99B.1.1570.026866
ORF1ab/nsp1297A97VgCtgTt99B.1.177.600.001966
ORF1ab/nsp1297A97SGctTct99P.10.000142
ORF1ab/nsp1297A97SGctTct88AY.340.000776
ORF1ab/nsp1297A97VgCtgTt88AY.4.10.0059
ORF1ab/nsp1297A97VgCtgTt88AY.980.000632
ORF1ab/nsp1297A97VgCtgTt88B.1.1.3050.030888
ORF1ab/nsp1297A97VgCtgTt88B.1.1600.00025
ORF1ab/nsp1297A97VgCtgTt88P.1.140.000382
ORF1ab/nsp1297A97VgCtgTt77AY.360.001037
ORF1ab/nsp1297A97VgCtgTt77AY.50.000145
ORF1ab/nsp1297A97AgcTgcC77AY.75.10.001262
ORF1ab/nsp1297A97AgcTgcC67B.1.617.20.000023
ORF1ab/nsp1297A97AgcTgcA17B.1.617.20.000004
ORF1ab/nsp1297A97TGctAct77P.10.00011
ORF1ab/nsp1297A97GgCtgGt66All0.000001
ORF1ab/nsp1297A97VgCtgTt66AY.450.00073
ORF1ab/nsp1297A97VgCtgTt66AY.920.001724
ORF1ab/nsp1297A97VgCtgTt66B.1.177.120.00091
ORF1ab/nsp1297A97SGctTct66B.1.3620.009245
ORF1ab/nsp1297A97delGCT---66B.1.617.20.000023
ORF1ab/nsp1297A97AgcTgcC45AY.1030.000025
ORF1ab/nsp1297A97AgcTgcA15AY.1030.000006
ORF1ab/nsp1297A97VgCtgTt55AY.3.10.000426
ORF1ab/nsp1297A97AgcTgcC45AY.430.000018
ORF1ab/nsp1297A97AgcTgcA15AY.430.000004
ORF1ab/nsp1297A97VgCtgTt55B.1.1.2140.000277
ORF1ab/nsp1297A97VgCtgTt55B.1.1.330.002104
ORF1ab/nsp1297A97VgCtgTt55B.1.1.4090.014164
ORF1ab/nsp1297A97VgCtgTt55B.1.177.70.000824
ORF1ab/nsp1297A97VgCtgTt55B.1.4990.005252
ORF1ab/nsp1297A97VgCtgTt55B.1.5170.002135
ORF1ab/nsp1297A97VgCtgTt55B.1.5960.000436
ORF1ab/nsp1297A97DgCtgAt44All0.000001
ORF1ab/nsp1297A97SGctTct44AY.1020.000106
ORF1ab/nsp1297A97VgCtgTt44AY.130.000644
ORF1ab/nsp1297A97VgCtgTt44AY.160.001519
ORF1ab/nsp1297A97AgcTgcC44AY.200.000155
ORF1ab/nsp1297A97VgCtgTt44AY.230.000279
ORF1ab/nsp1297A97VgCtgTt44AY.370.001264
ORF1ab/nsp1297A97VgCtgTt44AY.840.00175
ORF1ab/nsp1297A97VgCtgTt44B.1.1.1610.014134
ORF1ab/nsp1297A97AgcTgcC44B.1.1.3070.010127
ORF1ab/nsp1297A97VgCtgTt44B.1.1.4200.004024
ORF1ab/nsp1297A97delGCT---44B.1.1.70.000004
ORF1ab/nsp1297A97VgCtgTt44B.1.177.540.002426
ORF1ab/nsp1297A97SGctTct44B.1.20.000035
ORF1ab/nsp1297A97VgCtgTt44B.1.2580.000266
ORF1ab/nsp1297A97VgCtgTt44B.1.258.30.0067
ORF1ab/nsp1297A97VgCtgTt44B.1.4000.001716
ORF1ab/nsp1297A97SGctTct34B.1.617.20.000011
ORF1ab/nsp1297A97SGCTAGC14B.1.617.20.000004
ORF1ab/nsp1297A97VgCtgTt44B.1.6210.000354
ORF1ab/nsp1297A97VgCtgTt44B.1.6230.002146
ORF1ab/nsp1297A97VgCtgTt44P.1.17.10.0035
ORF1ab/nsp1297A97VgCtgTt44P.1.50.307692
ORF1ab/nsp1297A97VgCtgTt44P.20.000747
ORF1ab/nsp1297A97VgCtgTt33A0.001161
ORF1ab/nsp1297A97VgCtgTt33A.2.50.001497
ORF1ab/nsp1297A97del1Gct-ct33All0.000001
ORF1ab/nsp1297A97EgCTgAG23All0
ORF1ab/nsp1297A97EgCTgAA13All0
ORF1ab/nsp1297A97VgCtgTt33AY.1130.000427
ORF1ab/nsp1297A97VgCtgTt33AY.1210.000406
ORF1ab/nsp1297A97SGctTct33AY.250.000018
ORF1ab/nsp1297A97VgCtgTt33AY.39.10.000119
ORF1ab/nsp1297A97SGctTct33AY.440.000018
ORF1ab/nsp1297A97TGctAct33AY.440.000018
ORF1ab/nsp1297A97VgCtgTt33AY.5.30.001012
ORF1ab/nsp1297A97VgCtgTt33AY.580.002722
ORF1ab/nsp1297A97AgcTgcC33AY.750.000168
ORF1ab/nsp1297A97AgcTgcC33AY.9.20.00011
ORF1ab/nsp1297A97TGctAct33AY.99.20.000276
ORF1ab/nsp1297A97VgCtgTt33B.1.1.3180.000905
ORF1ab/nsp1297A97SGctTct33B.1.1.390.001529
ORF1ab/nsp1297A97VgCtgTt33B.1.1.390.001529
ORF1ab/nsp1297A97VgCtgTt33B.1.1.4320.003797
ORF1ab/nsp1297A97AgcTgcC33B.1.1.500.002037
ORF1ab/nsp1297A97VgCtgTt33B.1.177.570.000843
ORF1ab/nsp1297A97VgCtgTt33B.1.177.750.003122
ORF1ab/nsp1297A97VgCtgTt33B.1.177.810.000568
ORF1ab/nsp1297A97TGctAct33B.1.20.000026
ORF1ab/nsp1297A97AgcTgcC33B.1.2340.000396
ORF1ab/nsp1297A97VgCtgTt33B.1.258.170.000312
ORF1ab/nsp1297A97VgCtgTt33B.1.3690.000856
ORF1ab/nsp1297A97VgCtgTt33B.1.621.10.001517
ORF1ab/nsp1297A97AgcTgcC23P.10.000032
ORF1ab/nsp1297A97AgcTgcA13P.10.000016
ORF1ab/nsp1297A97VgCtgTt33Q.40.001364
ORF1ab/nsp1297A97VgCtgTt33R.10.00027
ORF1ab/nsp1297A97TGcTAcA220.111111
ORF1ab/nsp1297A97AgcTgcA220.111111
ORF1ab/nsp1297A97EgCTgAG220.111111
ORF1ab/nsp1297A97AgcTgcC22A0.000774
ORF1ab/nsp1297A97VgCtgTt22A.20.001324
ORF1ab/nsp1297A97VgCtgTt22AD.20.000438
ORF1ab/nsp1297A97TGctAct22AY.1020.000053
ORF1ab/nsp1297A97SGctTct22AY.1030.000012
ORF1ab/nsp1297A97AgcTgcC22AY.1060.00067
ORF1ab/nsp1297A97delGCT---22AY.1080.002205
ORF1ab/nsp1297A97VgCtgTt22AY.240.000862
ORF1ab/nsp1297A97delGCT---22AY.250.000012
ORF1ab/nsp1297A97VgCtgTt22AY.270.000129
ORF1ab/nsp1297A97VgCtgTt22AY.380.000999
ORF1ab/nsp1297A97SGctTct22AY.390.000049
ORF1ab/nsp1297A97TGctAct22AY.40.000003
ORF1ab/nsp1297A97delGCT---22AY.40.000003
ORF1ab/nsp1297A97PGctCct22AY.40.000003
ORF1ab/nsp1297A97SGctTct22AY.430.000009
ORF1ab/nsp1297A97VgCtgTt22AY.46.50.000397
ORF1ab/nsp1297A97VgCtgTt22AY.640.00119
ORF1ab/nsp1297A97VgCtgTt22AY.7.10.000225
ORF1ab/nsp1297A97VgCtgTt22AY.730.001331
ORF1ab/nsp1297A97SGctTct22AY.740.000231
ORF1ab/nsp1297A97SGctTct22AY.750.000112
ORF1ab/nsp1297A97VgCtgTt22AY.750.000112
ORF1ab/nsp1297A97delGCT---22AY.9.20.000073
ORF1ab/nsp1297A97VgCtgTt22AY.990.002099
ORF1ab/nsp1297A97delGCT---22AY.990.002099
ORF1ab/nsp1297A97delGCT---22B.10.000018
ORF1ab/nsp1297A97VgCtgTt22B.1.1.100.00223
ORF1ab/nsp1297A97VgCtgTt22B.1.1.2310.006192
ORF1ab/nsp1297A97AgcTgcC22B.1.1.2650.006309
ORF1ab/nsp1297A97VgCtgTt22B.1.1.280.000622
ORF1ab/nsp1297A97VgCtgTt22B.1.1.3060.000877
ORF1ab/nsp1297A97AgcTgcC22B.1.1.3060.000877
ORF1ab/nsp1297A97SGctTct22B.1.1.3170.000823
ORF1ab/nsp1297A97VgCtgTt22B.1.1.3700.025316
ORF1ab/nsp1297A97DgCtgAt22B.1.1.70.000002
ORF1ab/nsp1297A97VgCtgTt22B.1.177.400.010309
ORF1ab/nsp1297A97VgCtgTt22B.1.177.430.002954
ORF1ab/nsp1297A97VgCtgTt22B.1.177.440.001038
ORF1ab/nsp1297A97del1Gct-ct22B.1.20.000018
ORF1ab/nsp1297A97VgCtgTt22B.1.2390.002442
ORF1ab/nsp1297A97VgCtgTt22B.1.243.10.044444
ORF1ab/nsp1297A97VgCtgTt22B.1.2600.006689
ORF1ab/nsp1297A97TGctAct22B.1.3510.000059
ORF1ab/nsp1297A97VgCtgTt22B.1.351.20.000605
ORF1ab/nsp1297A97VgCtgTt22B.1.351.30.001753
ORF1ab/nsp1297A97AgcTgcC22B.1.360.000292
ORF1ab/nsp1297A97VgCtgTt22B.1.36.290.001035
ORF1ab/nsp1297A97VgCtgTt22B.1.3750.001639
ORF1ab/nsp1297A97VgCtgTt22B.1.3890.002004
ORF1ab/nsp1297A97VgCtgTt22B.1.4240.016129
ORF1ab/nsp1297A97AgcTgcC22B.1.5260.000047
ORF1ab/nsp1297A97VgCtgTt22B.1.5480.071429
ORF1ab/nsp1297A97VgCtgTt22B.1.5510.002581
ORF1ab/nsp1297A97VgCtgTt22B.1.5750.000607
ORF1ab/nsp1297A97VgCtgTt22B.1.6090.000959
ORF1ab/nsp1297A97VgCtgTt22B.1.617.10.000258
ORF1ab/nsp1297A97SGctTct22B.1.6200.001892
ORF1ab/nsp1297A97AgcTgcC22B.1.6370.000146
ORF1ab/nsp1297A97VgCtgTt22B.310.007463
ORF1ab/nsp1297A97VgCtgTt22C.37.10.005236
ORF1ab/nsp1297A97AgcTgcA22D.20.00015
ORF1ab/nsp1297A97VgCtgTt22D.20.00015
ORF1ab/nsp1297A97VgCtgTt22N.50.003534
ORF1ab/nsp1297A97VgCtgTt22P.1.100.000539
ORF1ab/nsp1297A97VgCtgTt11A.10.000282
ORF1ab/nsp1297A97VgCtgTt11AE.80.000489
ORF1ab/nsp1297A97del2GCt--t11All0
ORF1ab/nsp1297A97KGCTAAG11All0
ORF1ab/nsp1297A97CGCtTGt11All0
ORF1ab/nsp1297A97VgCtgTt11AY.10.000396
ORF1ab/nsp1297A97AgcTgcC11AY.1000.000046
ORF1ab/nsp1297A97SGctTct11AY.1090.00074
ORF1ab/nsp1297A97VgCtgTt11AY.1160.000287
ORF1ab/nsp1297A97delGCT---11AY.1170.000085
ORF1ab/nsp1297A97AgcTgcC11AY.1190.000035
ORF1ab/nsp1297A97GgCtgGt11AY.1200.000037
ORF1ab/nsp1297A97delGCT---11AY.1200.000037
ORF1ab/nsp1297A97TGctAct11AY.1200.000037
ORF1ab/nsp1297A97VgCtgTt11AY.120.2.10.000498
ORF1ab/nsp1297A97VgCtgTt11AY.140.000088
ORF1ab/nsp1297A97VgCtgTt11AY.16.10.00047
ORF1ab/nsp1297A97VgCtgTt11AY.210.001898
ORF1ab/nsp1297A97SGctTct11AY.230.00007
ORF1ab/nsp1297A97TGctAct11AY.260.000028
ORF1ab/nsp1297A97SGctTct11AY.270.000065
ORF1ab/nsp1297A97delGCT---11AY.30.00001
ORF1ab/nsp1297A97SGctTct11AY.30.00001
ORF1ab/nsp1297A97VgCtgTt11AY.34.10.00051
ORF1ab/nsp1297A97GgCtgGt11AY.40.000002
ORF1ab/nsp1297A97del1Gct-ct11AY.40.000002
ORF1ab/nsp1297A97AgcTgcC11AY.4.20.000022
ORF1ab/nsp1297A97SGctTct11AY.4.20.000022
ORF1ab/nsp1297A97PGctCct11AY.4.2.10.000149
ORF1ab/nsp1297A97VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp1297A97VgCtgTt11AY.4.40.000409
ORF1ab/nsp1297A97AgcTgcC11AY.400.000964
ORF1ab/nsp1297A97delGCT---11AY.430.000004
ORF1ab/nsp1297A97PGctCct11AY.440.000006
ORF1ab/nsp1297A97KGCTAAG11AY.440.000006
ORF1ab/nsp1297A97VgCtgTt11AY.46.40.000165
ORF1ab/nsp1297A97delGCT---11AY.46.60.000072
ORF1ab/nsp1297A97TGctAct11AY.50.000021
ORF1ab/nsp1297A97SGctTct11AY.5.30.000337
ORF1ab/nsp1297A97VgCtgTt11AY.520.000814
ORF1ab/nsp1297A97VgCtgTt11AY.650.000533
ORF1ab/nsp1297A97VgCtgTt11AY.670.000464
ORF1ab/nsp1297A97SGctTct11AY.670.000464
ORF1ab/nsp1297A97SGctTct11AY.70.000196
ORF1ab/nsp1297A97AgcTgcC11AY.70.000196
ORF1ab/nsp1297A97PGctCct11AY.750.000056
ORF1ab/nsp1297A97AgcTgcC11AY.770.001127
ORF1ab/nsp1297A97delGCT---11AY.80.000606
ORF1ab/nsp1297A97VgCtgTt11AY.850.000427
ORF1ab/nsp1297A97AgcTgcC11AY.860.00083
ORF1ab/nsp1297A97AgcTgcC11AY.90.000068
ORF1ab/nsp1297A97SGctTct11AY.9.10.000084
ORF1ab/nsp1297A97VgCtgTt11AY.930.000273
ORF1ab/nsp1297A97VgCtgTt11AY.950.000761
ORF1ab/nsp1297A97SGctTct11AY.98.10.000048
ORF1ab/nsp1297A97VgCtgTt11AY.99.20.000092
ORF1ab/nsp1297A97delGCT---11B0.000128
ORF1ab/nsp1297A97PGctCct11B.10.000009
ORF1ab/nsp1297A97TGctAct11B.10.000009
ORF1ab/nsp1297A97SGctTct11B.10.000009
ORF1ab/nsp1297A97DgCtgAt11B.10.000009
ORF1ab/nsp1297A97delGCT---11B.1.10.000018
ORF1ab/nsp1297A97delGCT---11B.1.1.10.000327
ORF1ab/nsp1297A97delGCT---11B.1.1.1390.022727
ORF1ab/nsp1297A97VgCtgTt11B.1.1.1410.002012
ORF1ab/nsp1297A97VgCtgTt11B.1.1.1530.001095
ORF1ab/nsp1297A97VgCtgTt11B.1.1.1700.001247
ORF1ab/nsp1297A97VgCtgTt11B.1.1.1710.003676
ORF1ab/nsp1297A97delGCT---11B.1.1.1920.002309
ORF1ab/nsp1297A97AgcTgcC11B.1.1.2140.000055
ORF1ab/nsp1297A97VgCtgTt11B.1.1.2220.000204
ORF1ab/nsp1297A97delGCT---11B.1.1.2360.006897
ORF1ab/nsp1297A97VgCtgTt11B.1.1.2410.00207
ORF1ab/nsp1297A97VgCtgTt11B.1.1.2840.000107
ORF1ab/nsp1297A97AgcTgcC11B.1.1.2840.000107
ORF1ab/nsp1297A97VgCtgTt11B.1.1.2890.002083
ORF1ab/nsp1297A97AgcTgcG11B.1.1.3180.000302
ORF1ab/nsp1297A97delGCT---11B.1.1.3480.000796
ORF1ab/nsp1297A97VgCtgTt11B.1.1.3880.045455
ORF1ab/nsp1297A97VgCtgTt11B.1.1.4160.000905
ORF1ab/nsp1297A97VgCtgTt11B.1.1.4330.001425
ORF1ab/nsp1297A97VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp1297A97TGctAct11B.1.1.5070.008696
ORF1ab/nsp1297A97VgCtgTt11B.1.1.5240.020833
ORF1ab/nsp1297A97VgCtgTt11B.1.1.5280.004808
ORF1ab/nsp1297A97VgCtgTt11B.1.1.570.011494
ORF1ab/nsp1297A97PGctCct11B.1.1.70.000001
ORF1ab/nsp1297A97GgCtgGt11B.1.1.70.000001
ORF1ab/nsp1297A97del2GCt--t11B.1.1.70.000001
ORF1ab/nsp1297A97PGctCct11B.1.1.700.000341
ORF1ab/nsp1297A97SGctTct11B.1.1770.000013
ORF1ab/nsp1297A97TGctAct11B.1.1770.000013
ORF1ab/nsp1297A97AgcTgcC11B.1.1770.000013
ORF1ab/nsp1297A97GgCtgGt11B.1.1770.000013
ORF1ab/nsp1297A97VgCtgTt11B.1.177.170.000821
ORF1ab/nsp1297A97VgCtgTt11B.1.177.200.001517
ORF1ab/nsp1297A97VgCtgTt11B.1.177.210.000076
ORF1ab/nsp1297A97VgCtgTt11B.1.177.330.001645
ORF1ab/nsp1297A97VgCtgTt11B.1.177.350.000691
ORF1ab/nsp1297A97VgCtgTt11B.1.177.40.000211
ORF1ab/nsp1297A97VgCtgTt11B.1.177.460.000918
ORF1ab/nsp1297A97VgCtgTt11B.1.177.510.004566
ORF1ab/nsp1297A97delGCT---11B.1.177.570.000281
ORF1ab/nsp1297A97VgCtgTt11B.1.177.620.001192
ORF1ab/nsp1297A97VgCtgTt11B.1.177.720.00339
ORF1ab/nsp1297A97VgCtgTt11B.1.177.730.000566
ORF1ab/nsp1297A97GgCtgGt11B.1.20.000009
ORF1ab/nsp1297A97CGCtTGt11B.1.20.000009
ORF1ab/nsp1297A97delGCT---11B.1.20.000009
ORF1ab/nsp1297A97VgCtgTt11B.1.2140.003663
ORF1ab/nsp1297A97VgCtgTt11B.1.214.20.0006
ORF1ab/nsp1297A97delGCT---11B.1.2210.000071
ORF1ab/nsp1297A97AgcTgcC11B.1.2210.000071
ORF1ab/nsp1297A97VgCtgTt11B.1.221.30.000833
ORF1ab/nsp1297A97SGctTct11B.1.2340.000132
ORF1ab/nsp1297A97PGctCct11B.1.2390.001221
ORF1ab/nsp1297A97SGctTct11B.1.2430.00007
ORF1ab/nsp1297A97delGCT---11B.1.2580.000067
ORF1ab/nsp1297A97VgCtgTt11B.1.258.140.00098
ORF1ab/nsp1297A97delGCT---11B.1.258.160.001637
ORF1ab/nsp1297A97AgcTgcC11B.1.258.170.000104
ORF1ab/nsp1297A97VgCtgTt11B.1.258.20.004505
ORF1ab/nsp1297A97VgCtgTt11B.1.3110.000275
ORF1ab/nsp1297A97AgcTgcC11B.1.3460.001311
ORF1ab/nsp1297A97delGCT---11B.1.3510.00003
ORF1ab/nsp1297A97SGctTct11B.1.351.30.000876
ORF1ab/nsp1297A97VgCtgTt11B.1.351.50.0006
ORF1ab/nsp1297A97VgCtgTt11B.1.36.10.00114
ORF1ab/nsp1297A97VgCtgTt11B.1.36.180.00042
ORF1ab/nsp1297A97VgCtgTt11B.1.36.240.006173
ORF1ab/nsp1297A97AgcTgcA11B.1.36.80.001
ORF1ab/nsp1297A97delGCT---11B.1.4150.014286
ORF1ab/nsp1297A97VgCtgTt11B.1.4250.002994
ORF1ab/nsp1297A97SGctTct11B.1.4290.000024
ORF1ab/nsp1297A97VgCtgTt11B.1.4320.011236
ORF1ab/nsp1297A97VgCtgTt11B.1.4530.003236
ORF1ab/nsp1297A97AgcTgcC11B.1.4560.003268
ORF1ab/nsp1297A97AgcTgcC11B.1.466.20.000391
ORF1ab/nsp1297A97VgCtgTt11B.1.466.20.000391
ORF1ab/nsp1297A97AgcTgcC11B.1.5250.000113
ORF1ab/nsp1297A97delGCT---11B.1.5260.000024
ORF1ab/nsp1297A97VgCtgTt11B.1.5330.009615
ORF1ab/nsp1297A97VgCtgTt11B.1.5610.000397
ORF1ab/nsp1297A97AgcTgcA11B.1.5950.000261
ORF1ab/nsp1297A97delGCT---11B.1.5960.000087
ORF1ab/nsp1297A97EgCTgAA11B.1.5960.000087
ORF1ab/nsp1297A97TGctAct11B.1.5960.000087
ORF1ab/nsp1297A97DgCtgAt11B.1.5960.000087
ORF1ab/nsp1297A97SGctTct11B.1.617.10.000129
ORF1ab/nsp1297A97TGctAct11B.1.617.10.000129
ORF1ab/nsp1297A97PGctCct11B.1.617.10.000129
ORF1ab/nsp1297A97delGCT---11B.1.6300.005236
ORF1ab/nsp1297A97VgCtgTt11B.30.000831
ORF1ab/nsp1297A97VgCtgTt11B.400.000364
ORF1ab/nsp1297A97VgCtgTt11B.450.003831
ORF1ab/nsp1297A97VgCtgTt11B.550.00295
ORF1ab/nsp1297A97VgCtgTt11C.160.00106
ORF1ab/nsp1297A97delGCT---11C.170.055556
ORF1ab/nsp1297A97VgCtgTt11C.350.000774
ORF1ab/nsp1297A97delGCT---11C.360.000911
ORF1ab/nsp1297A97VgCtgTt11N.40.004255
ORF1ab/nsp1297A97GgCtgGt11P.1.10.000318
ORF1ab/nsp1297A97delGCT---11P.1.10.000318
ORF1ab/nsp1297A97AgcTgcC11P.1.150.000232
ORF1ab/nsp1297A97TGctAct11P.1.20.001156
ORF1ab/nsp1297A97VgCtgTt11P.30.001595
ORF1ab/nsp1297A97VgCtgTt11Q.10.000126
ORF1ab/nsp1297A97delGCT---11Q.20.000613
ORF1ab/nsp1297A97VgCtgTt11Q.30.000145
ORF1ab/nsp1297A97PGctCct11Q.30.000145
ORF1ab/nsp1297A97delGCT---11Q.80.000165