CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 932

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12932Q932HQ5324HnonsyncaGcaT5825800.99656416234-16236
ORF1ab/nsp12932Q932HQ5324HnonsyncaGcaC58220.0034364316234-16236
ORF1ab/nsp12932Q932QQ5324QsyncaGcaA492492116234-16236
ORF1ab/nsp12932Q932delQ5324deldelCAG---9898116234-16236
ORF1ab/nsp12932Q932XQ5324XnonsynCagTag44430.97727316234-16236
ORF1ab/nsp12932Q932XQ5324XnonsynCaGTaA4410.022727316234-16236
ORF1ab/nsp12932Q932RQ5324RnonsyncAgcGg1060.616234-16236
ORF1ab/nsp12932Q932RQ5324RnonsyncAGcGA1030.316234-16236
ORF1ab/nsp12932Q932RQ5324RnonsynCAgAGg1010.116234-16236
ORF1ab/nsp12932Q932KQ5324KnonsynCagAag750.71428616234-16236
ORF1ab/nsp12932Q932LQ5324LnonsyncAgcTg740.57142916234-16236
ORF1ab/nsp12932Q932KQ5324KnonsynCaGAaA720.28571416234-16236
ORF1ab/nsp12932Q932LQ5324LnonsyncAGcTA720.28571416234-16236
ORF1ab/nsp12932Q932LQ5324LnonsynCAgTTg710.14285716234-16236
ORF1ab/nsp12932Q932del2Q5324del2delCAg--g530.616234-16236
ORF1ab/nsp12932Q932del2Q5324del2delCAG--T520.416234-16236
ORF1ab/nsp12932Q932PQ5324PnonsyncAgcCg420.516234-16236
ORF1ab/nsp12932Q932PQ5324PnonsyncAGcCT410.2516234-16236
ORF1ab/nsp12932Q932PQ5324PnonsyncAGcCA410.2516234-16236
ORF1ab/nsp12932Q932EQ5324EnonsynCagGag22116234-16236
ORF1ab/nsp12932Q932TQ5324TnonsynCAGACT210.516234-16236
ORF1ab/nsp12932Q932TQ5324TnonsynCAgACg210.516234-16236
ORF1ab/nsp12932Q932del1Q5324del1delCag-ag11116234-16236
ORF1ab/nsp12932Q932NQ5324NnonsynCaGAaT11116234-16236
ORF1ab/nsp12932Q932DQ5324DnonsynCaGGaC11116234-16236
ORF1ab/nsp12932Q932CQ5324CnonsynCAGTGT11116234-16236

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12932Q932HcaGcaT580582All0.000111
ORF1ab/nsp12932Q932HcaGcaC2582All0
ORF1ab/nsp12932Q932QcaGcaA492492All0.000094
ORF1ab/nsp12932Q932HcaGcaT117117AY.40.000182
ORF1ab/nsp12932Q932HcaGcaT100100AY.3.10.008526
ORF1ab/nsp12932Q932QcaGcaA9999B.1.617.10.012768
ORF1ab/nsp12932Q932delCAG---9898All0.000019
ORF1ab/nsp12932Q932QcaGcaA7373AY.46.40.012009
ORF1ab/nsp12932Q932QcaGcaA7070A.280.185185
ORF1ab/nsp12932Q932delCAG---4646B.1.1.70.000041
ORF1ab/nsp12932Q932HcaGcaT4646B.1.1.70.000041
ORF1ab/nsp12932Q932XCagTag4344All0.000008
ORF1ab/nsp12932Q932XCaGTaA144All0
ORF1ab/nsp12932Q932HcaGcaT4444B.1.438.10.00472
ORF1ab/nsp12932Q932HcaGcaT2525AV.10.126263
ORF1ab/nsp12932Q932QcaGcaA2525B.1.1.2140.001386
ORF1ab/nsp12932Q932QcaGcaA2525B.1.4290.000588
ORF1ab/nsp12932Q932QcaGcaA2424AY.1030.000149
ORF1ab/nsp12932Q932HcaGcaT1818AY.1030.000112
ORF1ab/nsp12932Q932QcaGcaA1616B.1.1.70.000014
ORF1ab/nsp12932Q932HcaGcaT1515AY.250.00009
ORF1ab/nsp12932Q932HcaGcaT1515B.1.416.10.023438
ORF1ab/nsp12932Q932QcaGcaA1515B.1.617.20.000056
ORF1ab/nsp12932Q932QcaGcaA1414AY.250.000084
ORF1ab/nsp12932Q932HcaGcaT1414B.1.20.000123
ORF1ab/nsp12932Q932HcaGcaT1111B.1.1600.000343
ORF1ab/nsp12932Q932QcaGcaA1111B.1.177.410.0275
ORF1ab/nsp12932Q932HcaGcaT1111L.40.55
ORF1ab/nsp12932Q932RcAgcGg610All0.000001
ORF1ab/nsp12932Q932RcAGcGA310All0.000001
ORF1ab/nsp12932Q932RCAgAGg110All0
ORF1ab/nsp12932Q932QcaGcaA1010AY.40.000016
ORF1ab/nsp12932Q932HcaGcaT1010B.10.000092
ORF1ab/nsp12932Q932HcaGcaT1010B.1.617.20.000038
ORF1ab/nsp12932Q932QcaGcaA99B.10.000082
ORF1ab/nsp12932Q932HcaGcaT99P.10.000142
ORF1ab/nsp12932Q932HcaGcaT78AY.430.000031
ORF1ab/nsp12932Q932HcaGcaC18AY.430.000004
ORF1ab/nsp12932Q932delCAG---88B.1.1770.000105
ORF1ab/nsp12932Q932QcaGcaA88B.1.177.810.001515
ORF1ab/nsp12932Q932HcaGcaT88B.1.2430.000557
ORF1ab/nsp12932Q932HcaGcaT88B.400.002914
ORF1ab/nsp12932Q932HcaGcaT88B.6.80.066116
ORF1ab/nsp12932Q932QcaGcaA88P.10.000126
ORF1ab/nsp12932Q932KCagAag57All0.000001
ORF1ab/nsp12932Q932LcAgcTg47All0.000001
ORF1ab/nsp12932Q932LcAGcTA27All0
ORF1ab/nsp12932Q932KCaGAaA27All0
ORF1ab/nsp12932Q932LCAgTTg17All0
ORF1ab/nsp12932Q932HcaGcaT77AY.46.50.001389
ORF1ab/nsp12932Q932XCagTag77B.10.000064
ORF1ab/nsp12932Q932QcaGcaA77B.1.1.280.002179
ORF1ab/nsp12932Q932XCagTag77B.1.1.70.000006
ORF1ab/nsp12932Q932XCagTag77B.1.20.000062
ORF1ab/nsp12932Q932HcaGcaT66AY.330.000401
ORF1ab/nsp12932Q932delCAG---66AY.40.000009
ORF1ab/nsp12932Q932HcaGcaT56AY.440.00003
ORF1ab/nsp12932Q932HcaGcaC16AY.440.000006
ORF1ab/nsp12932Q932del2CAg--g35All0.000001
ORF1ab/nsp12932Q932del2CAG--T25All0
ORF1ab/nsp12932Q932HcaGcaT55AY.50.000103
ORF1ab/nsp12932Q932QcaGcaA55B.1.1.4160.004525
ORF1ab/nsp12932Q932QcaGcaA55P.1.170.000809
ORF1ab/nsp12932Q932PcAgcCg24All0
ORF1ab/nsp12932Q932PcAGcCA14All0
ORF1ab/nsp12932Q932PcAGcCT14All0
ORF1ab/nsp12932Q932QcaGcaA44AY.200.000155
ORF1ab/nsp12932Q932XCagTag44B.1.10.000073
ORF1ab/nsp12932Q932HcaGcaT44B.1.3560.006908
ORF1ab/nsp12932Q932XCagTag44B.1.5960.000349
ORF1ab/nsp12932Q932QcaGcaA33AY.140.000264
ORF1ab/nsp12932Q932HcaGcaT33AY.290.000047
ORF1ab/nsp12932Q932HcaGcaT33AY.30.00003
ORF1ab/nsp12932Q932delCAG---33AY.4.50.000322
ORF1ab/nsp12932Q932QcaGcaA33AY.430.000013
ORF1ab/nsp12932Q932HcaGcaT33AY.46.60.000217
ORF1ab/nsp12932Q932HcaGcaT33AY.9.20.00011
ORF1ab/nsp12932Q932HcaGcaT33AY.98.10.000145
ORF1ab/nsp12932Q932QcaGcaA33B.1.1.570.034483
ORF1ab/nsp12932Q932QcaGcaA33B.1.1770.00004
ORF1ab/nsp12932Q932HcaGcaT33B.1.466.20.001174
ORF1ab/nsp12932Q932QcaGcaA33B.1.5250.000339
ORF1ab/nsp12932Q932delCAG---33B.1.617.20.000011
ORF1ab/nsp12932Q932LcAGcTA220.111111
ORF1ab/nsp12932Q932del2CAG--T220.111111
ORF1ab/nsp12932Q932KCaGAaA220.111111
ORF1ab/nsp12932Q932delCAG---220.111111
ORF1ab/nsp12932Q932QcaGcaA22A0.000774
ORF1ab/nsp12932Q932HcaGcaT22A.2.50.000998
ORF1ab/nsp12932Q932ECagGag22All0
ORF1ab/nsp12932Q932TCAGACT12All0
ORF1ab/nsp12932Q932TCAgACg12All0
ORF1ab/nsp12932Q932XCagTag22AY.1030.000012
ORF1ab/nsp12932Q932RcAGcGA12AY.1130.000142
ORF1ab/nsp12932Q932PcAGcCA12AY.1130.000142
ORF1ab/nsp12932Q932PcAgcCg12AY.1130.000142
ORF1ab/nsp12932Q932RcAgcGg12AY.1130.000142
ORF1ab/nsp12932Q932HcaGcaT22AY.260.000057
ORF1ab/nsp12932Q932QcaGcaA22AY.30.00002
ORF1ab/nsp12932Q932HcaGcaT22AY.39.10.000079
ORF1ab/nsp12932Q932delCAG---22AY.430.000009
ORF1ab/nsp12932Q932RcAGcGA12AY.430.000004
ORF1ab/nsp12932Q932RcAgcGg12AY.430.000004
ORF1ab/nsp12932Q932QcaGcaA22AY.440.000012
ORF1ab/nsp12932Q932QcaGcaA22AY.460.000208
ORF1ab/nsp12932Q932RcAgcGg22B.10.000018
ORF1ab/nsp12932Q932delCAG---22B.10.000018
ORF1ab/nsp12932Q932HcaGcaT22B.1.10.000036
ORF1ab/nsp12932Q932delCAG---22B.1.10.000036
ORF1ab/nsp12932Q932delCAG---22B.1.1.3110.000716
ORF1ab/nsp12932Q932HcaGcaT22B.1.1.3180.000604
ORF1ab/nsp12932Q932TCAGACT12B.1.1.330.000421
ORF1ab/nsp12932Q932TCAgACg12B.1.1.330.000421
ORF1ab/nsp12932Q932PcAGcCT12B.1.1.330.000421
ORF1ab/nsp12932Q932PcAgcCg12B.1.1.330.000421
ORF1ab/nsp12932Q932HcaGcaT22B.1.1.370.000386
ORF1ab/nsp12932Q932HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp12932Q932LcAgcTg22B.1.1.70.000002
ORF1ab/nsp12932Q932QcaGcaA22B.1.1600.000062
ORF1ab/nsp12932Q932QcaGcaA22B.1.20.000018
ORF1ab/nsp12932Q932HcaGcaT22B.1.2210.000142
ORF1ab/nsp12932Q932QcaGcaA22B.1.3110.000549
ORF1ab/nsp12932Q932QcaGcaA22B.1.466.20.000782
ORF1ab/nsp12932Q932QcaGcaA22B.1.5260.000047
ORF1ab/nsp12932Q932HcaGcaT22B.60.00182
ORF1ab/nsp12932Q932XCagTag22D.20.00015
ORF1ab/nsp12932Q932QcaGcaA22P.1.150.000465
ORF1ab/nsp12932Q932HcaGcaT22P.1.170.000324
ORF1ab/nsp12932Q932delCAG---11A0.000387
ORF1ab/nsp12932Q932NCaGAaT11All0
ORF1ab/nsp12932Q932DCaGGaC11All0
ORF1ab/nsp12932Q932CCAGTGT11All0
ORF1ab/nsp12932Q932del1Cag-ag11All0
ORF1ab/nsp12932Q932HcaGcaT11AY.1000.000046
ORF1ab/nsp12932Q932HcaGcaT11AY.1020.000027
ORF1ab/nsp12932Q932HcaGcaT11AY.1040.001984
ORF1ab/nsp12932Q932HcaGcaT11AY.1070.000466
ORF1ab/nsp12932Q932QcaGcaA11AY.1190.000035
ORF1ab/nsp12932Q932QcaGcaA11AY.1200.000037
ORF1ab/nsp12932Q932HcaGcaT11AY.200.000039
ORF1ab/nsp12932Q932delCAG---11AY.230.00007
ORF1ab/nsp12932Q932HcaGcaT11AY.240.000431
ORF1ab/nsp12932Q932XCagTag11AY.250.000006
ORF1ab/nsp12932Q932delCAG---11AY.250.000006
ORF1ab/nsp12932Q932QcaGcaA11AY.270.000065
ORF1ab/nsp12932Q932QcaGcaA11AY.290.000016
ORF1ab/nsp12932Q932ECagGag11AY.30.00001
ORF1ab/nsp12932Q932QcaGcaA11AY.3.10.000085
ORF1ab/nsp12932Q932QcaGcaA11AY.300.000396
ORF1ab/nsp12932Q932delCAG---11AY.350.000233
ORF1ab/nsp12932Q932delCAG---11AY.390.000025
ORF1ab/nsp12932Q932HcaGcaT11AY.390.000025
ORF1ab/nsp12932Q932HcaGcaT11AY.400.000964
ORF1ab/nsp12932Q932HcaGcaT11AY.410.000294
ORF1ab/nsp12932Q932RcAgcGg11AY.420.00004
ORF1ab/nsp12932Q932HcaGcaT11AY.420.00004
ORF1ab/nsp12932Q932XCagTag11AY.430.000004
ORF1ab/nsp12932Q932LcAgcTg11AY.430.000004
ORF1ab/nsp12932Q932ECagGag11AY.430.000004
ORF1ab/nsp12932Q932HcaGcaT11AY.460.000104
ORF1ab/nsp12932Q932delCAG---11AY.460.000104
ORF1ab/nsp12932Q932HcaGcaT11AY.46.20.000635
ORF1ab/nsp12932Q932HcaGcaT11AY.480.000465
ORF1ab/nsp12932Q932HcaGcaT11AY.5.30.000337
ORF1ab/nsp12932Q932HcaGcaT11AY.540.000095
ORF1ab/nsp12932Q932HcaGcaT11AY.600.000938
ORF1ab/nsp12932Q932RcAGcGA11AY.670.000464
ORF1ab/nsp12932Q932KCagAag11AY.840.000437
ORF1ab/nsp12932Q932HcaGcaT11AY.880.000884
ORF1ab/nsp12932Q932delCAG---11AY.90.000068
ORF1ab/nsp12932Q932HcaGcaT11AY.90.000068
ORF1ab/nsp12932Q932DCaGGaC11AY.990.001049
ORF1ab/nsp12932Q932QcaGcaA11B0.000128
ORF1ab/nsp12932Q932LCAgTTg11B.1.10.000018
ORF1ab/nsp12932Q932QcaGcaA11B.1.10.000018
ORF1ab/nsp12932Q932XCagTag11B.1.1.100.001115
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2160.00089
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2220.000204
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.2220.000204
ORF1ab/nsp12932Q932delCAG---11B.1.1.2320.001815
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2410.00207
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2850.006536
ORF1ab/nsp12932Q932del2CAg--g11B.1.1.3110.000358
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.330.000421
ORF1ab/nsp12932Q932KCagAag11B.1.1.330.000421
ORF1ab/nsp12932Q932NCaGAaT11B.1.1.330.000421
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.3690.000446
ORF1ab/nsp12932Q932delCAG---11B.1.1.370.000193
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.4200.001006
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.4640.001473
ORF1ab/nsp12932Q932XCagTag11B.1.1.610.008772
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.630.000386
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.630.000386
ORF1ab/nsp12932Q932RCAgAGg11B.1.1.70.000001
ORF1ab/nsp12932Q932CCAGTGT11B.1.1.70.000001
ORF1ab/nsp12932Q932del2CAg--g11B.1.1.70.000001
ORF1ab/nsp12932Q932KCagAag11B.1.110.30.000718
ORF1ab/nsp12932Q932XCagTag11B.1.1470.000756
ORF1ab/nsp12932Q932LcAgcTg11B.1.1770.000013
ORF1ab/nsp12932Q932HcaGcaT11B.1.1770.000013
ORF1ab/nsp12932Q932XCagTag11B.1.1770.000013
ORF1ab/nsp12932Q932RcAgcGg11B.1.1770.000013
ORF1ab/nsp12932Q932del1Cag-ag11B.1.177.110.001698
ORF1ab/nsp12932Q932HcaGcaT11B.1.177.150.000631
ORF1ab/nsp12932Q932delCAG---11B.1.177.180.00116
ORF1ab/nsp12932Q932delCAG---11B.1.177.190.001431
ORF1ab/nsp12932Q932QcaGcaA11B.1.177.600.000218
ORF1ab/nsp12932Q932delCAG---11B.1.177.620.001192
ORF1ab/nsp12932Q932delCAG---11B.1.177.680.015152
ORF1ab/nsp12932Q932delCAG---11B.1.177.730.000566
ORF1ab/nsp12932Q932del2CAg--g11B.1.177.870.000728
ORF1ab/nsp12932Q932delCAG---11B.1.177.90.001332
ORF1ab/nsp12932Q932QcaGcaA11B.1.2320.000537
ORF1ab/nsp12932Q932QcaGcaA11B.1.2360.002053
ORF1ab/nsp12932Q932XCagTag11B.1.2430.00007
ORF1ab/nsp12932Q932delCAG---11B.1.2580.000067
ORF1ab/nsp12932Q932QcaGcaA11B.1.258.170.000104
ORF1ab/nsp12932Q932XCagTag11B.1.258.70.001912
ORF1ab/nsp12932Q932HcaGcaT11B.1.3190.003049
ORF1ab/nsp12932Q932KCagAag11B.1.3510.00003
ORF1ab/nsp12932Q932QcaGcaA11B.1.3510.00003
ORF1ab/nsp12932Q932QcaGcaA11B.1.36.360.000602
ORF1ab/nsp12932Q932HcaGcaT11B.1.4110.003704
ORF1ab/nsp12932Q932delCAG---11B.1.416.10.001563
ORF1ab/nsp12932Q932HcaGcaT11B.1.4270.00005
ORF1ab/nsp12932Q932QcaGcaA11B.1.4270.00005
ORF1ab/nsp12932Q932KCagAag11B.1.4290.000024
ORF1ab/nsp12932Q932delCAG---11B.1.4530.003236
ORF1ab/nsp12932Q932HcaGcaT11B.1.5100.026316
ORF1ab/nsp12932Q932XCagTag11B.1.5240.001406
ORF1ab/nsp12932Q932XCagTag11B.1.5260.000024
ORF1ab/nsp12932Q932HcaGcaT11B.1.5610.000397
ORF1ab/nsp12932Q932HcaGcaT11B.1.5650.00081
ORF1ab/nsp12932Q932QcaGcaA11B.1.5660.019231
ORF1ab/nsp12932Q932delCAG---11B.1.5760.000907
ORF1ab/nsp12932Q932QcaGcaA11B.1.5810.009434
ORF1ab/nsp12932Q932delCAG---11B.1.5850.027778
ORF1ab/nsp12932Q932QcaGcaA11B.1.5870.001898
ORF1ab/nsp12932Q932QcaGcaA11B.1.5960.000087
ORF1ab/nsp12932Q932delCAG---11B.1.5960.000087
ORF1ab/nsp12932Q932QcaGcaA11B.1.6090.000479
ORF1ab/nsp12932Q932delCAG---11B.1.617.10.000129
ORF1ab/nsp12932Q932HcaGcaT11B.40.002208
ORF1ab/nsp12932Q932HcaGcaT11B.520.010101
ORF1ab/nsp12932Q932QcaGcaA11B.550.00295
ORF1ab/nsp12932Q932XCaGTaA11C.170.055556
ORF1ab/nsp12932Q932QcaGcaA11C.370.000116
ORF1ab/nsp12932Q932HcaGcaT11C.370.000116
ORF1ab/nsp12932Q932HcaGcaT11D.20.000075
ORF1ab/nsp12932Q932QcaGcaA11D.20.000075
ORF1ab/nsp12932Q932QcaGcaA11D.50.004975
ORF1ab/nsp12932Q932QcaGcaA11P.1.10.000318
ORF1ab/nsp12932Q932HcaGcaT11P.1.140.000048
ORF1ab/nsp12932Q932HcaGcaT11P.1.80.004785