CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 932

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12932Q932HQ5324HnonsyncaGcaT5825800.99656416234-16236
ORF1ab/nsp12932Q932HQ5324HnonsyncaGcaC58220.0034364316234-16236
ORF1ab/nsp12932Q932QQ5324QsyncaGcaA492492116234-16236
ORF1ab/nsp12932Q932delQ5324deldelCAG---9898116234-16236
ORF1ab/nsp12932Q932XQ5324XnonsynCagTag44430.97727316234-16236
ORF1ab/nsp12932Q932XQ5324XnonsynCaGTaA4410.022727316234-16236
ORF1ab/nsp12932Q932RQ5324RnonsyncAgcGg1060.616234-16236
ORF1ab/nsp12932Q932RQ5324RnonsyncAGcGA1030.316234-16236
ORF1ab/nsp12932Q932RQ5324RnonsynCAgAGg1010.116234-16236
ORF1ab/nsp12932Q932KQ5324KnonsynCagAag750.71428616234-16236
ORF1ab/nsp12932Q932LQ5324LnonsyncAgcTg740.57142916234-16236
ORF1ab/nsp12932Q932KQ5324KnonsynCaGAaA720.28571416234-16236
ORF1ab/nsp12932Q932LQ5324LnonsyncAGcTA720.28571416234-16236
ORF1ab/nsp12932Q932LQ5324LnonsynCAgTTg710.14285716234-16236
ORF1ab/nsp12932Q932del2Q5324del2delCAg--g530.616234-16236
ORF1ab/nsp12932Q932del2Q5324del2delCAG--T520.416234-16236
ORF1ab/nsp12932Q932PQ5324PnonsyncAgcCg420.516234-16236
ORF1ab/nsp12932Q932PQ5324PnonsyncAGcCT410.2516234-16236
ORF1ab/nsp12932Q932PQ5324PnonsyncAGcCA410.2516234-16236
ORF1ab/nsp12932Q932EQ5324EnonsynCagGag22116234-16236
ORF1ab/nsp12932Q932TQ5324TnonsynCAGACT210.516234-16236
ORF1ab/nsp12932Q932TQ5324TnonsynCAgACg210.516234-16236
ORF1ab/nsp12932Q932del1Q5324del1delCag-ag11116234-16236
ORF1ab/nsp12932Q932NQ5324NnonsynCaGAaT11116234-16236
ORF1ab/nsp12932Q932DQ5324DnonsynCaGGaC11116234-16236
ORF1ab/nsp12932Q932CQ5324CnonsynCAGTGT11116234-16236

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12932Q932HcaGcaT580582All0.000111
ORF1ab/nsp12932Q932HcaGcaC2582All0
ORF1ab/nsp12932Q932QcaGcaA492492All0.000094
ORF1ab/nsp12932Q932HcaGcaT117117AY.40.000182
ORF1ab/nsp12932Q932HcaGcaT100100AY.3.10.008526
ORF1ab/nsp12932Q932QcaGcaA9999B.1.617.10.012768
ORF1ab/nsp12932Q932delCAG---9898All0.000019
ORF1ab/nsp12932Q932QcaGcaA7373AY.46.40.012009
ORF1ab/nsp12932Q932QcaGcaA7070A.280.185185
ORF1ab/nsp12932Q932delCAG---4646B.1.1.70.000041
ORF1ab/nsp12932Q932HcaGcaT4646B.1.1.70.000041
ORF1ab/nsp12932Q932XCagTag4344All0.000008
ORF1ab/nsp12932Q932XCaGTaA144All0
ORF1ab/nsp12932Q932HcaGcaT4444B.1.438.10.00472
ORF1ab/nsp12932Q932HcaGcaT2525AV.10.126263
ORF1ab/nsp12932Q932QcaGcaA2525B.1.1.2140.001386
ORF1ab/nsp12932Q932QcaGcaA2525B.1.4290.000588
ORF1ab/nsp12932Q932QcaGcaA2424AY.1030.000149
ORF1ab/nsp12932Q932HcaGcaT1818AY.1030.000112
ORF1ab/nsp12932Q932QcaGcaA1616B.1.1.70.000014
ORF1ab/nsp12932Q932HcaGcaT1515AY.250.00009
ORF1ab/nsp12932Q932HcaGcaT1515B.1.416.10.023438
ORF1ab/nsp12932Q932QcaGcaA1515B.1.617.20.000056
ORF1ab/nsp12932Q932QcaGcaA1414AY.250.000084
ORF1ab/nsp12932Q932HcaGcaT1414B.1.20.000123
ORF1ab/nsp12932Q932HcaGcaT1111B.1.1600.000343
ORF1ab/nsp12932Q932QcaGcaA1111B.1.177.410.0275
ORF1ab/nsp12932Q932HcaGcaT1111L.40.55
ORF1ab/nsp12932Q932RcAgcGg610All0.000001
ORF1ab/nsp12932Q932RcAGcGA310All0.000001
ORF1ab/nsp12932Q932RCAgAGg110All0
ORF1ab/nsp12932Q932QcaGcaA1010AY.40.000016
ORF1ab/nsp12932Q932HcaGcaT1010B.10.000092
ORF1ab/nsp12932Q932HcaGcaT1010B.1.617.20.000038
ORF1ab/nsp12932Q932QcaGcaA99B.10.000082
ORF1ab/nsp12932Q932HcaGcaT99P.10.000142
ORF1ab/nsp12932Q932HcaGcaT78AY.430.000031
ORF1ab/nsp12932Q932HcaGcaC18AY.430.000004
ORF1ab/nsp12932Q932delCAG---88B.1.1770.000105
ORF1ab/nsp12932Q932QcaGcaA88B.1.177.810.001515
ORF1ab/nsp12932Q932HcaGcaT88B.1.2430.000557
ORF1ab/nsp12932Q932HcaGcaT88B.400.002914
ORF1ab/nsp12932Q932HcaGcaT88B.6.80.066116
ORF1ab/nsp12932Q932QcaGcaA88P.10.000126
ORF1ab/nsp12932Q932KCagAag57All0.000001
ORF1ab/nsp12932Q932LcAgcTg47All0.000001
ORF1ab/nsp12932Q932LcAGcTA27All0
ORF1ab/nsp12932Q932KCaGAaA27All0
ORF1ab/nsp12932Q932LCAgTTg17All0
ORF1ab/nsp12932Q932HcaGcaT77AY.46.50.001389
ORF1ab/nsp12932Q932XCagTag77B.10.000064
ORF1ab/nsp12932Q932QcaGcaA77B.1.1.280.002179
ORF1ab/nsp12932Q932XCagTag77B.1.1.70.000006
ORF1ab/nsp12932Q932XCagTag77B.1.20.000062
ORF1ab/nsp12932Q932HcaGcaT66AY.330.000401
ORF1ab/nsp12932Q932delCAG---66AY.40.000009
ORF1ab/nsp12932Q932HcaGcaT56AY.440.00003
ORF1ab/nsp12932Q932HcaGcaC16AY.440.000006
ORF1ab/nsp12932Q932del2CAg--g35All0.000001
ORF1ab/nsp12932Q932del2CAG--T25All0
ORF1ab/nsp12932Q932HcaGcaT55AY.50.000103
ORF1ab/nsp12932Q932QcaGcaA55B.1.1.4160.004525
ORF1ab/nsp12932Q932QcaGcaA55P.1.170.000809
ORF1ab/nsp12932Q932PcAgcCg24All0
ORF1ab/nsp12932Q932PcAGcCA14All0
ORF1ab/nsp12932Q932PcAGcCT14All0
ORF1ab/nsp12932Q932QcaGcaA44AY.200.000155
ORF1ab/nsp12932Q932XCagTag44B.1.10.000073
ORF1ab/nsp12932Q932HcaGcaT44B.1.3560.006908
ORF1ab/nsp12932Q932XCagTag44B.1.5960.000349
ORF1ab/nsp12932Q932QcaGcaA33AY.140.000264
ORF1ab/nsp12932Q932HcaGcaT33AY.290.000047
ORF1ab/nsp12932Q932HcaGcaT33AY.30.00003
ORF1ab/nsp12932Q932delCAG---33AY.4.50.000322
ORF1ab/nsp12932Q932QcaGcaA33AY.430.000013
ORF1ab/nsp12932Q932HcaGcaT33AY.46.60.000217
ORF1ab/nsp12932Q932HcaGcaT33AY.9.20.00011
ORF1ab/nsp12932Q932HcaGcaT33AY.98.10.000145
ORF1ab/nsp12932Q932QcaGcaA33B.1.1.570.034483
ORF1ab/nsp12932Q932QcaGcaA33B.1.1770.00004
ORF1ab/nsp12932Q932HcaGcaT33B.1.466.20.001174
ORF1ab/nsp12932Q932QcaGcaA33B.1.5250.000339
ORF1ab/nsp12932Q932delCAG---33B.1.617.20.000011
ORF1ab/nsp12932Q932LcAGcTA220.111111
ORF1ab/nsp12932Q932del2CAG--T220.111111
ORF1ab/nsp12932Q932KCaGAaA220.111111
ORF1ab/nsp12932Q932delCAG---220.111111
ORF1ab/nsp12932Q932QcaGcaA22A0.000774
ORF1ab/nsp12932Q932HcaGcaT22A.2.50.000998
ORF1ab/nsp12932Q932ECagGag22All0
ORF1ab/nsp12932Q932TCAGACT12All0
ORF1ab/nsp12932Q932TCAgACg12All0
ORF1ab/nsp12932Q932XCagTag22AY.1030.000012
ORF1ab/nsp12932Q932RcAGcGA12AY.1130.000142
ORF1ab/nsp12932Q932PcAGcCA12AY.1130.000142
ORF1ab/nsp12932Q932PcAgcCg12AY.1130.000142
ORF1ab/nsp12932Q932RcAgcGg12AY.1130.000142
ORF1ab/nsp12932Q932HcaGcaT22AY.260.000057
ORF1ab/nsp12932Q932QcaGcaA22AY.30.00002
ORF1ab/nsp12932Q932HcaGcaT22AY.39.10.000079
ORF1ab/nsp12932Q932delCAG---22AY.430.000009
ORF1ab/nsp12932Q932RcAGcGA12AY.430.000004
ORF1ab/nsp12932Q932RcAgcGg12AY.430.000004
ORF1ab/nsp12932Q932QcaGcaA22AY.440.000012
ORF1ab/nsp12932Q932QcaGcaA22AY.460.000208
ORF1ab/nsp12932Q932RcAgcGg22B.10.000018
ORF1ab/nsp12932Q932delCAG---22B.10.000018
ORF1ab/nsp12932Q932HcaGcaT22B.1.10.000036
ORF1ab/nsp12932Q932delCAG---22B.1.10.000036
ORF1ab/nsp12932Q932delCAG---22B.1.1.3110.000716
ORF1ab/nsp12932Q932HcaGcaT22B.1.1.3180.000604
ORF1ab/nsp12932Q932TCAGACT12B.1.1.330.000421
ORF1ab/nsp12932Q932TCAgACg12B.1.1.330.000421
ORF1ab/nsp12932Q932PcAGcCT12B.1.1.330.000421
ORF1ab/nsp12932Q932PcAgcCg12B.1.1.330.000421
ORF1ab/nsp12932Q932HcaGcaT22B.1.1.370.000386
ORF1ab/nsp12932Q932HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp12932Q932LcAgcTg22B.1.1.70.000002
ORF1ab/nsp12932Q932QcaGcaA22B.1.1600.000062
ORF1ab/nsp12932Q932QcaGcaA22B.1.20.000018
ORF1ab/nsp12932Q932HcaGcaT22B.1.2210.000142
ORF1ab/nsp12932Q932QcaGcaA22B.1.3110.000549
ORF1ab/nsp12932Q932QcaGcaA22B.1.466.20.000782
ORF1ab/nsp12932Q932QcaGcaA22B.1.5260.000047
ORF1ab/nsp12932Q932HcaGcaT22B.60.00182
ORF1ab/nsp12932Q932XCagTag22D.20.00015
ORF1ab/nsp12932Q932QcaGcaA22P.1.150.000465
ORF1ab/nsp12932Q932HcaGcaT22P.1.170.000324
ORF1ab/nsp12932Q932delCAG---11A0.000387
ORF1ab/nsp12932Q932NCaGAaT11All0
ORF1ab/nsp12932Q932DCaGGaC11All0
ORF1ab/nsp12932Q932CCAGTGT11All0
ORF1ab/nsp12932Q932del1Cag-ag11All0
ORF1ab/nsp12932Q932HcaGcaT11AY.1000.000046
ORF1ab/nsp12932Q932HcaGcaT11AY.1020.000027
ORF1ab/nsp12932Q932HcaGcaT11AY.1040.001984
ORF1ab/nsp12932Q932HcaGcaT11AY.1070.000466
ORF1ab/nsp12932Q932QcaGcaA11AY.1190.000035
ORF1ab/nsp12932Q932QcaGcaA11AY.1200.000037
ORF1ab/nsp12932Q932HcaGcaT11AY.200.000039
ORF1ab/nsp12932Q932delCAG---11AY.230.00007
ORF1ab/nsp12932Q932HcaGcaT11AY.240.000431
ORF1ab/nsp12932Q932XCagTag11AY.250.000006
ORF1ab/nsp12932Q932delCAG---11AY.250.000006
ORF1ab/nsp12932Q932QcaGcaA11AY.270.000065
ORF1ab/nsp12932Q932QcaGcaA11AY.290.000016
ORF1ab/nsp12932Q932ECagGag11AY.30.00001
ORF1ab/nsp12932Q932QcaGcaA11AY.3.10.000085
ORF1ab/nsp12932Q932QcaGcaA11AY.300.000396
ORF1ab/nsp12932Q932delCAG---11AY.350.000233
ORF1ab/nsp12932Q932delCAG---11AY.390.000025
ORF1ab/nsp12932Q932HcaGcaT11AY.390.000025
ORF1ab/nsp12932Q932HcaGcaT11AY.400.000964
ORF1ab/nsp12932Q932HcaGcaT11AY.410.000294
ORF1ab/nsp12932Q932RcAgcGg11AY.420.00004
ORF1ab/nsp12932Q932HcaGcaT11AY.420.00004
ORF1ab/nsp12932Q932XCagTag11AY.430.000004
ORF1ab/nsp12932Q932LcAgcTg11AY.430.000004
ORF1ab/nsp12932Q932ECagGag11AY.430.000004
ORF1ab/nsp12932Q932HcaGcaT11AY.460.000104
ORF1ab/nsp12932Q932delCAG---11AY.460.000104
ORF1ab/nsp12932Q932HcaGcaT11AY.46.20.000635
ORF1ab/nsp12932Q932HcaGcaT11AY.480.000465
ORF1ab/nsp12932Q932HcaGcaT11AY.5.30.000337
ORF1ab/nsp12932Q932HcaGcaT11AY.540.000095
ORF1ab/nsp12932Q932HcaGcaT11AY.600.000938
ORF1ab/nsp12932Q932RcAGcGA11AY.670.000464
ORF1ab/nsp12932Q932KCagAag11AY.840.000437
ORF1ab/nsp12932Q932HcaGcaT11AY.880.000884
ORF1ab/nsp12932Q932delCAG---11AY.90.000068
ORF1ab/nsp12932Q932HcaGcaT11AY.90.000068
ORF1ab/nsp12932Q932DCaGGaC11AY.990.001049
ORF1ab/nsp12932Q932QcaGcaA11B0.000128
ORF1ab/nsp12932Q932LCAgTTg11B.1.10.000018
ORF1ab/nsp12932Q932QcaGcaA11B.1.10.000018
ORF1ab/nsp12932Q932XCagTag11B.1.1.100.001115
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2160.00089
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2220.000204
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.2220.000204
ORF1ab/nsp12932Q932delCAG---11B.1.1.2320.001815
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2410.00207
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.2850.006536
ORF1ab/nsp12932Q932del2CAg--g11B.1.1.3110.000358
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.330.000421
ORF1ab/nsp12932Q932KCagAag11B.1.1.330.000421
ORF1ab/nsp12932Q932NCaGAaT11B.1.1.330.000421
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.3690.000446
ORF1ab/nsp12932Q932delCAG---11B.1.1.370.000193
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.4200.001006
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.4640.001473
ORF1ab/nsp12932Q932XCagTag11B.1.1.610.008772
ORF1ab/nsp12932Q932HcaGcaT11B.1.1.630.000386
ORF1ab/nsp12932Q932QcaGcaA11B.1.1.630.000386
ORF1ab/nsp12932Q932RCAgAGg11B.1.1.70.000001
ORF1ab/nsp12932Q932CCAGTGT11B.1.1.70.000001
ORF1ab/nsp12932Q932del2CAg--g11B.1.1.70.000001
ORF1ab/nsp12932Q932KCagAag11B.1.110.30.000718
ORF1ab/nsp12932Q932XCagTag11B.1.1470.000756
ORF1ab/nsp12932Q932LcAgcTg11B.1.1770.000013
ORF1ab/nsp12932Q932HcaGcaT11B.1.1770.000013
ORF1ab/nsp12932Q932XCagTag11B.1.1770.000013
ORF1ab/nsp12932Q932RcAgcGg11B.1.1770.000013
ORF1ab/nsp12932Q932del1Cag-ag11B.1.177.110.001698
ORF1ab/nsp12932Q932HcaGcaT11B.1.177.150.000631
ORF1ab/nsp12932Q932delCAG---11B.1.177.180.00116
ORF1ab/nsp12932Q932delCAG---11B.1.177.190.001431
ORF1ab/nsp12932Q932QcaGcaA11B.1.177.600.000218
ORF1ab/nsp12932Q932delCAG---11B.1.177.620.001192
ORF1ab/nsp12932Q932delCAG---11B.1.177.680.015152
ORF1ab/nsp12932Q932delCAG---11B.1.177.730.000566
ORF1ab/nsp12932Q932del2CAg--g11B.1.177.870.000728
ORF1ab/nsp12932Q932delCAG---11B.1.177.90.001332
ORF1ab/nsp12932Q932QcaGcaA11B.1.2320.000537
ORF1ab/nsp12932Q932QcaGcaA11B.1.2360.002053
ORF1ab/nsp12932Q932XCagTag11B.1.2430.00007
ORF1ab/nsp12932Q932delCAG---11B.1.2580.000067
ORF1ab/nsp12932Q932QcaGcaA11B.1.258.170.000104
ORF1ab/nsp12932Q932XCagTag11B.1.258.70.001912
ORF1ab/nsp12932Q932HcaGcaT11B.1.3190.003049
ORF1ab/nsp12932Q932KCagAag11B.1.3510.00003
ORF1ab/nsp12932Q932QcaGcaA11B.1.3510.00003
ORF1ab/nsp12932Q932QcaGcaA11B.1.36.360.000602
ORF1ab/nsp12932Q932HcaGcaT11B.1.4110.003704
ORF1ab/nsp12932Q932delCAG---11B.1.416.10.001563
ORF1ab/nsp12932Q932HcaGcaT11B.1.4270.00005
ORF1ab/nsp12932Q932QcaGcaA11B.1.4270.00005
ORF1ab/nsp12932Q932KCagAag11B.1.4290.000024
ORF1ab/nsp12932Q932delCAG---11B.1.4530.003236
ORF1ab/nsp12932Q932HcaGcaT11B.1.5100.026316
ORF1ab/nsp12932Q932XCagTag11B.1.5240.001406
ORF1ab/nsp12932Q932XCagTag11B.1.5260.000024
ORF1ab/nsp12932Q932HcaGcaT11B.1.5610.000397
ORF1ab/nsp12932Q932HcaGcaT11B.1.5650.00081
ORF1ab/nsp12932Q932QcaGcaA11B.1.5660.019231
ORF1ab/nsp12932Q932delCAG---11B.1.5760.000907
ORF1ab/nsp12932Q932QcaGcaA11B.1.5810.009434
ORF1ab/nsp12932Q932delCAG---11B.1.5850.027778
ORF1ab/nsp12932Q932QcaGcaA11B.1.5870.001898
ORF1ab/nsp12932Q932QcaGcaA11B.1.5960.000087
ORF1ab/nsp12932Q932delCAG---11B.1.5960.000087
ORF1ab/nsp12932Q932QcaGcaA11B.1.6090.000479
ORF1ab/nsp12932Q932delCAG---11B.1.617.10.000129
ORF1ab/nsp12932Q932HcaGcaT11B.40.002208
ORF1ab/nsp12932Q932HcaGcaT11B.520.010101
ORF1ab/nsp12932Q932QcaGcaA11B.550.00295
ORF1ab/nsp12932Q932XCaGTaA11C.170.055556
ORF1ab/nsp12932Q932QcaGcaA11C.370.000116
ORF1ab/nsp12932Q932HcaGcaT11C.370.000116
ORF1ab/nsp12932Q932HcaGcaT11D.20.000075
ORF1ab/nsp12932Q932QcaGcaA11D.20.000075
ORF1ab/nsp12932Q932QcaGcaA11D.50.004975
ORF1ab/nsp12932Q932QcaGcaA11P.1.10.000318
ORF1ab/nsp12932Q932HcaGcaT11P.1.140.000048
ORF1ab/nsp12932Q932HcaGcaT11P.1.80.004785

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.