CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 912

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp12	912	T912T	T5304T	syn	acT	acC	1145808	1145694	0.999901	16174-16176
ORF1ab/nsp12	912	T912T	T5304T	syn	acT	acA	1145808	67	0.000058474	16174-16176
ORF1ab/nsp12	912	T912T	T5304T	syn	acT	acG	1145808	47	0.0000410191	16174-16176
ORF1ab/nsp12	912	T912I	T5304I	nonsyn	aCT	aTC	728	592	0.813187	16174-16176
ORF1ab/nsp12	912	T912I	T5304I	nonsyn	aCt	aTt	728	136	0.186813	16174-16176
ORF1ab/nsp12	912	T912N	T5304N	nonsyn	aCt	aAt	152	141	0.927632	16174-16176
ORF1ab/nsp12	912	T912N	T5304N	nonsyn	aCT	aAC	152	11	0.0723684	16174-16176
ORF1ab/nsp12	912	T912del	T5304del	del	ACT	---	50	50	1	16174-16176
ORF1ab/nsp12	912	T912A	T5304A	nonsyn	Act	Gct	32	30	0.9375	16174-16176
ORF1ab/nsp12	912	T912A	T5304A	nonsyn	AcT	GcC	32	2	0.0625	16174-16176
ORF1ab/nsp12	912	T912del1	T5304del1	del	acT	ac-	6	6	1	16174-16176
ORF1ab/nsp12	912	T912S	T5304S	nonsyn	Act	Tct	2	2	1	16174-16176
ORF1ab/nsp12	912	T912del2	T5304del2	del	aCT	a--	1	1	1	16174-16176
ORF1ab/nsp12	912	T912F	T5304F	nonsyn	ACt	TTt	1	1	1	16174-16176

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp12	912	T912T	acT	acC	1145694	1145808	All	0.219128
ORF1ab/nsp12	912	T912T	acT	acA	67	1145808	All	0.000013
ORF1ab/nsp12	912	T912T	acT	acG	47	1145808	All	0.000009
ORF1ab/nsp12	912	T912T	acT	acC	1113950	1114001	B.1.1.7	0.997234
ORF1ab/nsp12	912	T912T	acT	acA	51	1114001	B.1.1.7	0.000046
ORF1ab/nsp12	912	T912T	acT	acC	7880	7880	Q.1	0.995452
ORF1ab/nsp12	912	T912T	acT	acC	6891	6891	Q.3	0.99942
ORF1ab/nsp12	912	T912T	acT	acC	5920	5920	Q.8	0.976253
ORF1ab/nsp12	912	T912T	acT	acC	3156	3156	B.1.1	0.057253
ORF1ab/nsp12	912	T912T	acT	acC	2198	2198	Q.4	0.999545
ORF1ab/nsp12	912	T912T	acT	acC	1625	1625	Q.2	0.996933
ORF1ab/nsp12	912	T912T	acT	acC	1391	1394	B.1	0.012741
ORF1ab/nsp12	912	T912T	acT	acA	2	1394	B.1	0.000018
ORF1ab/nsp12	912	T912T	acT	acG	1	1394	B.1	0.000009
ORF1ab/nsp12	912	T912T	acT	acC	900	900	Q.7	1
ORF1ab/nsp12	912	T912I	aCT	aTC	592	728	All	0.000113
ORF1ab/nsp12	912	T912I	aCt	aTt	136	728	All	0.000026
ORF1ab/nsp12	912	T912I	aCT	aTC	562	562	B.1.1.7	0.000503
ORF1ab/nsp12	912	T912N	aCt	aAt	141	152	All	0.000027
ORF1ab/nsp12	912	T912N	aCT	aAC	11	152	All	0.000002
ORF1ab/nsp12	912	T912T	acT	acC	151	151	Q.6	1
ORF1ab/nsp12	912	T912T	acT	acC	114	114	B.1.177.73	0.064553
ORF1ab/nsp12	912	T912T	acT	acC	93	94	B.1.351	0.002765
ORF1ab/nsp12	912	T912T	acT	acG	1	94	B.1.351	0.00003
ORF1ab/nsp12	912	T912T	acT	acC	90	91	B.1.177	0.001185
ORF1ab/nsp12	912	T912T	acT	acA	1	91	B.1.177	0.000013
ORF1ab/nsp12	912	T912T	acT	acC	85	85	B.1.576	0.077063
ORF1ab/nsp12	912	T912T	acT	acC	54	72	B.1.2	0.000475
ORF1ab/nsp12	912	T912T	acT	acG	13	72	B.1.2	0.000114
ORF1ab/nsp12	912	T912T	acT	acA	5	72	B.1.2	0.000044
ORF1ab/nsp12	912	T912T	acT	acC	70	70	B.1.221	0.004972
ORF1ab/nsp12	912	T912N	aCt	aAt	61	61	AY.14	0.005369
ORF1ab/nsp12	912	T912T	acT	acC	59	59	Q.5	1
ORF1ab/nsp12	912	T912T	acT	acC	53	53	B	0.006774
ORF1ab/nsp12	912	T912del	ACT	---	50	50	All	0.00001
ORF1ab/nsp12	912	T912T	acT	acC	49	49	B.1.1.507	0.426087
ORF1ab/nsp12	912	T912T	acT	acC	49	49	P.1	0.000772
ORF1ab/nsp12	912	T912T	acT	acC	47	47	B.1.526	0.001105
ORF1ab/nsp12	912	T912T	acT	acC	43	43	B.1.1.409	0.121813
ORF1ab/nsp12	912	T912T	acT	acC	35	40	AY.4	0.000054
ORF1ab/nsp12	912	T912T	acT	acA	5	40	AY.4	0.000008
ORF1ab/nsp12	912	T912T	acT	acC	37	37	B.1.375	0.030328
ORF1ab/nsp12	912	T912T	acT	acC	23	33	AY.43	0.000102
ORF1ab/nsp12	912	T912T	acT	acG	9	33	AY.43	0.00004
ORF1ab/nsp12	912	T912T	acT	acA	1	33	AY.43	0.000004
ORF1ab/nsp12	912	T912A	Act	Gct	30	32	All	0.000006
ORF1ab/nsp12	912	T912A	AcT	GcC	2	32	All	0
ORF1ab/nsp12	912	T912T	acT	acC	31	31	AY.44	0.000189
ORF1ab/nsp12	912	T912T	acT	acC	28	31	B.1.617.2	0.000105
ORF1ab/nsp12	912	T912T	acT	acG	3	31	B.1.617.2	0.000011
ORF1ab/nsp12	912	T912I	aCT	aTC	29	29	Q.1	0.003663
ORF1ab/nsp12	912	T912T	acT	acC	27	27	B.1.1.312	0.051625
ORF1ab/nsp12	912	T912T	acT	acC	24	24	B.1.1.161	0.084806
ORF1ab/nsp12	912	T912T	acT	acC	24	24	B.1.596	0.002091
ORF1ab/nsp12	912	T912del	ACT	---	23	23	B.1.1.7	0.000021
ORF1ab/nsp12	912	T912T	acT	acC	21	21	B.1.1.528	0.100962
ORF1ab/nsp12	912	T912A	Act	Gct	20	20	B.1.177	0.000263
ORF1ab/nsp12	912	T912N	aCt	aAt	19	19	AY.4	0.00003
ORF1ab/nsp12	912	T912T	acT	acC	18	18	B.1.1.519	0.000715
ORF1ab/nsp12	912	T912T	acT	acC	18	18	B.1.160	0.000561
ORF1ab/nsp12	912	T912I	aCt	aTt	18	18	B.1.429	0.000424
ORF1ab/nsp12	912	T912T	acT	acC	17	17	B.1.609	0.00815
ORF1ab/nsp12	912	T912I	aCt	aTt	17	17	B.1.617.2	0.000064
ORF1ab/nsp12	912	T912N	aCt	aAt	16	16	B.1.177	0.000211
ORF1ab/nsp12	912	T912T	acT	acC	14	14	B.1.1.220	0.026022
ORF1ab/nsp12	912	T912T	acT	acC	14	14	P.1.1	0.004447
ORF1ab/nsp12	912	T912T	acT	acC	10	12	AY.103	0.000062
ORF1ab/nsp12	912	T912T	acT	acG	2	12	AY.103	0.000012
ORF1ab/nsp12	912	T912T	acT	acC	11	11		0.611111
ORF1ab/nsp12	912	T912I	aCt	aTt	11	11	AY.3	0.000109
ORF1ab/nsp12	912	T912I	aCt	aTt	11	11	AY.44	0.000067
ORF1ab/nsp12	912	T912N	aCT	aAC	11	11	B.1.1.7	0.00001
ORF1ab/nsp12	912	T912T	acT	acC	11	11	B.1.177.7	0.001813
ORF1ab/nsp12	912	T912T	acT	acC	10	10	AY.29	0.000158
ORF1ab/nsp12	912	T912T	acT	acC	10	10	B.1.429	0.000235
ORF1ab/nsp12	912	T912T	acT	acC	10	10	B.1.474	0.019011
ORF1ab/nsp12	912	T912T	acT	acC	10	10	C.36.3	0.005672
ORF1ab/nsp12	912	T912I	aCt	aTt	10	10	R.1	0.0009
ORF1ab/nsp12	912	T912T	acT	acC	9	9	B.1.411	0.033333
ORF1ab/nsp12	912	T912T	acT	acC	9	9	B.1.637	0.000658
ORF1ab/nsp12	912	T912T	acT	acC	9	9	C.37	0.001045
ORF1ab/nsp12	912	T912T	acT	acC	9	9	P.1.15	0.002091
ORF1ab/nsp12	912	T912del	ACT	---	8	8	AY.4	0.000012
ORF1ab/nsp12	912	T912T	acT	acC	8	8	B.1.258	0.000532
ORF1ab/nsp12	912	T912T	acT	acC	8	8	B.1.623	0.004292
ORF1ab/nsp12	912	T912I	aCt	aTt	7	7	AY.25	0.000042
ORF1ab/nsp12	912	T912T	acT	acC	7	7	B.1.139	0.005132
ORF1ab/nsp12	912	T912T	acT	acG	6	7	B.1.575	0.00182
ORF1ab/nsp12	912	T912T	acT	acC	1	7	B.1.575	0.000303
ORF1ab/nsp12	912	T912N	aCt	aAt	7	7	B.1.617.2	0.000026
ORF1ab/nsp12	912	T912del1	acT	ac-	6	6	All	0.000001
ORF1ab/nsp12	912	T912N	aCt	aAt	6	6	AY.103	0.000037
ORF1ab/nsp12	912	T912T	acT	acC	6	6	AY.30	0.002374
ORF1ab/nsp12	912	T912T	acT	acC	6	6	AY.33	0.000401
ORF1ab/nsp12	912	T912T	acT	acC	6	6	AY.39	0.000148
ORF1ab/nsp12	912	T912I	aCt	aTt	6	6	AY.4	0.000009
ORF1ab/nsp12	912	T912T	acT	acC	6	6	AY.42	0.000241
ORF1ab/nsp12	912	T912T	acT	acC	4	6	AY.45	0.000487
ORF1ab/nsp12	912	T912T	acT	acG	2	6	AY.45	0.000243
ORF1ab/nsp12	912	T912T	acT	acC	6	6	B.1.1.39	0.003058
ORF1ab/nsp12	912	T912I	aCt	aTt	6	6	B.1.2	0.000053
ORF1ab/nsp12	912	T912T	acT	acC	6	6	B.1.427	0.000303
ORF1ab/nsp12	912	T912T	acT	acC	6	6	B.1.620	0.005676
ORF1ab/nsp12	912	T912T	acT	acC	6	6	R.1	0.00054
ORF1ab/nsp12	912	T912T	acT	acC	5	5	AY.120	0.000186
ORF1ab/nsp12	912	T912T	acT	acC	5	5	AY.75	0.00028
ORF1ab/nsp12	912	T912T	acT	acC	5	5	B.1.1.10	0.005574
ORF1ab/nsp12	912	T912T	acT	acC	5	5	B.1.1.70	0.001705
ORF1ab/nsp12	912	T912T	acT	acC	5	5	B.1.157	0.014925
ORF1ab/nsp12	912	T912I	aCt	aTt	5	5	B.1.240	0.001078
ORF1ab/nsp12	912	T912T	acT	acC	5	5	B.1.564	0.002129
ORF1ab/nsp12	912	T912T	acT	acC	5	5	B.1.595	0.001305
ORF1ab/nsp12	912	T912I	aCt	aTt	4	4	AY.103	0.000025
ORF1ab/nsp12	912	T912T	acT	acC	2	4	AY.25	0.000012
ORF1ab/nsp12	912	T912T	acT	acG	2	4	AY.25	0.000012
ORF1ab/nsp12	912	T912T	acT	acC	4	4	AY.47	0.000124
ORF1ab/nsp12	912	T912T	acT	acC	4	4	AY.68	0.001095
ORF1ab/nsp12	912	T912T	acT	acC	4	4	AY.74	0.000463
ORF1ab/nsp12	912	T912T	acT	acC	4	4	AY.75.1	0.000721
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.1.318	0.001207
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.1.50	0.002716
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.1.524	0.083333
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.177.31	0.045977
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.206	0.003263
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.367	0.00317
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.580	0.01626
ORF1ab/nsp12	912	T912T	acT	acC	4	4	B.1.617.1	0.000516
ORF1ab/nsp12	912	T912T	acT	acG	3	4	B.1.628	0.001057
ORF1ab/nsp12	912	T912T	acT	acC	1	4	B.1.628	0.000352
ORF1ab/nsp12	912	T912T	acT	acC	4	4	P.1.12	0.001936
ORF1ab/nsp12	912	T912T	acT	acC	3	3	A	0.001161
ORF1ab/nsp12	912	T912T	acT	acC	3	3	A.2.5	0.001497
ORF1ab/nsp12	912	T912T	acT	acC	3	3	AY.23	0.000209
ORF1ab/nsp12	912	T912T	acT	acC	3	3	AY.26	0.000085
ORF1ab/nsp12	912	T912T	acT	acC	3	3	AY.3	0.00003
ORF1ab/nsp12	912	T912I	aCt	aTt	3	3	AY.33	0.0002
ORF1ab/nsp12	912	T912del	ACT	---	3	3	AY.4.5	0.000322
ORF1ab/nsp12	912	T912T	acT	acC	3	3	AY.46.6	0.000217
ORF1ab/nsp12	912	T912I	aCt	aTt	3	3	AY.64	0.001786
ORF1ab/nsp12	912	T912I	aCt	aTt	3	3	B.1	0.000027
ORF1ab/nsp12	912	T912I	aCt	aTt	3	3	B.1.1	0.000054
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.1.294	0.003797
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.177.41	0.0075
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.177.44	0.001557
ORF1ab/nsp12	912	T912N	aCt	aAt	3	3	B.1.177.6	0.00293
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.237	0.014925
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.311	0.000824
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.36	0.000438
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.369	0.000856
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.525	0.000339
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.533	0.028846
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.625	0.007059
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.627	0.006061
ORF1ab/nsp12	912	T912T	acT	acC	3	3	B.1.633	0.125
ORF1ab/nsp12	912	T912S	Act	Tct	2	2	All	0
ORF1ab/nsp12	912	T912T	acT	acC	2	2	AV.1	0.010101
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	AY.100	0.000092
ORF1ab/nsp12	912	T912T	acT	acG	1	2	AY.12	0.000316
ORF1ab/nsp12	912	T912T	acT	acC	1	2	AY.12	0.000316
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	AY.25	0.000012
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	AY.3	0.00002
ORF1ab/nsp12	912	T912T	acT	acC	2	2	AY.34.1	0.00102
ORF1ab/nsp12	912	T912I	aCt	aTt	2	2	AY.43	0.000009
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	AY.43	0.000009
ORF1ab/nsp12	912	T912T	acT	acC	2	2	AY.46	0.000208
ORF1ab/nsp12	912	T912I	aCt	aTt	2	2	AY.47	0.000062
ORF1ab/nsp12	912	T912T	acT	acC	2	2	AY.52	0.001629
ORF1ab/nsp12	912	T912T	acT	acC	2	2	AY.62	0.000871
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	B.1	0.000018
ORF1ab/nsp12	912	T912A	Act	Gct	2	2	B.1	0.000018
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.1	0.000653
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.141	0.004024
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.269	0.002706
ORF1ab/nsp12	912	T912T	acT	acC	1	2	B.1.1.277	0.000759
ORF1ab/nsp12	912	T912T	acT	acA	1	2	B.1.1.277	0.000759
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.28	0.000622
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.291	0.001485
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.299	0.02439
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.306	0.000877
ORF1ab/nsp12	912	T912del	ACT	---	2	2	B.1.1.311	0.000716
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.34	0.026316
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.370	0.025316
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	B.1.1.391	0.017094
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.432	0.002532
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.523	0.003125
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.1.525	0.010929
ORF1ab/nsp12	912	T912del1	acT	ac-	2	2	B.1.1.7	0.000002
ORF1ab/nsp12	912	T912A	AcT	GcC	1	2	B.1.1.7	0.000001
ORF1ab/nsp12	912	T912A	Act	Gct	1	2	B.1.1.7	0.000001
ORF1ab/nsp12	912	T912del	ACT	---	2	2	B.1.177	0.000026
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.177.12	0.000303
ORF1ab/nsp12	912	T912T	acT	acG	1	2	B.1.177.21	0.000076
ORF1ab/nsp12	912	T912T	acT	acC	1	2	B.1.177.21	0.000076
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.177.6	0.001953
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.177.86	0.000367
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.177.9	0.002663
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.214	0.007326
ORF1ab/nsp12	912	T912A	Act	Gct	2	2	B.1.221	0.000142
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.234	0.000264
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.241	0.001623
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.243	0.000139
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.258.14	0.001961
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.258.17	0.000208
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.380	0.013245
ORF1ab/nsp12	912	T912I	aCt	aTt	2	2	B.1.427	0.000101
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.462	0.014493
ORF1ab/nsp12	912	T912T	acT	acC	1	2	B.1.524	0.001406
ORF1ab/nsp12	912	T912T	acT	acA	1	2	B.1.524	0.001406
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.530	0.014286
ORF1ab/nsp12	912	T912I	aCt	aTt	2	2	B.1.564	0.000852
ORF1ab/nsp12	912	T912T	acT	acC	2	2	B.1.599	0.007299
ORF1ab/nsp12	912	T912A	Act	Gct	2	2	B.1.617.1	0.000258
ORF1ab/nsp12	912	T912del1	acT	ac-	2	2	B.1.627	0.00404
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	B.1.637	0.000146
ORF1ab/nsp12	912	T912N	aCt	aAt	2	2	P.1.15	0.000465
ORF1ab/nsp12	912	T912T	acT	acC	2	2	P.1.16	0.000748
ORF1ab/nsp12	912	T912T	acT	acC	2	2	P.1.17	0.000324
ORF1ab/nsp12	912	T912T	acT	acC	2	2	P.1.7	0.000639
ORF1ab/nsp12	912	T912T	acT	acC	1	1	A.2.5.1	0.004808
ORF1ab/nsp12	912	T912T	acT	acC	1	1	A.2.5.2	0.001572
ORF1ab/nsp12	912	T912T	acT	acC	1	1	A.27	0.001656
ORF1ab/nsp12	912	T912T	acT	acC	1	1	A.7	0.055556
ORF1ab/nsp12	912	T912del	ACT	---	1	1	AD.2	0.000219
ORF1ab/nsp12	912	T912del2	aCT	a--	1	1	All	0
ORF1ab/nsp12	912	T912F	ACt	TTt	1	1	All	0
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.102	0.000027
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.116	0.000287
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.116	0.000287
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.117	0.000085
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.117	0.000085
ORF1ab/nsp12	912	T912S	Act	Tct	1	1	AY.118	0.000063
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.119	0.000035
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.120	0.000037
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.13	0.000161
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.13	0.000161
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.16	0.00038
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.19	0.00114
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.2	0.000356
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.20	0.000039
ORF1ab/nsp12	912	T912del	ACT	---	1	1	AY.25	0.000006
ORF1ab/nsp12	912	T912A	Act	Gct	1	1	AY.25	0.000006
ORF1ab/nsp12	912	T912del	ACT	---	1	1	AY.3	0.00001
ORF1ab/nsp12	912	T912T	acT	acG	1	1	AY.3.1	0.000085
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.32	0.000532
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.39	0.000025
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.39.1	0.00004
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.4.2	0.000022
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.42	0.00004
ORF1ab/nsp12	912	T912del	ACT	---	1	1	AY.43	0.000004
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.46.6	0.000072
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.47	0.000031
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.48	0.000465
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.51	0.000909
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.53	0.000288
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.61	0.000105
ORF1ab/nsp12	912	T912T	acT	acG	1	1	AY.61	0.000105
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.67	0.000464
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.68	0.000274
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.75	0.000056
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.85	0.000427
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.86	0.00083
ORF1ab/nsp12	912	T912T	acT	acG	1	1	AY.87	0.000833
ORF1ab/nsp12	912	T912del	ACT	---	1	1	AY.9	0.000068
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.9	0.000068
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.9.1	0.000084
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	AY.9.2	0.000037
ORF1ab/nsp12	912	T912A	AcT	GcC	1	1	AY.9.2	0.000037
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.9.2	0.000037
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.90	0.000684
ORF1ab/nsp12	912	T912A	Act	Gct	1	1	AY.91	0.00073
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.92	0.000287
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.95	0.000761
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.98	0.000079
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	AY.98	0.000079
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AY.98.1	0.000048
ORF1ab/nsp12	912	T912T	acT	acC	1	1	AZ.2	0.000821
ORF1ab/nsp12	912	T912S	Act	Tct	1	1	B.1.1	0.000018
ORF1ab/nsp12	912	T912del	ACT	---	1	1	B.1.1	0.000018
ORF1ab/nsp12	912	T912del1	acT	ac-	1	1	B.1.1	0.000018
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.135	0.004695
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.171	0.003676
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.189	0.001513
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.207	0.001182
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.214	0.000055
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.231	0.003096
ORF1ab/nsp12	912	T912del	ACT	---	1	1	B.1.1.232	0.001815
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.236	0.006897
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.237	0.005405
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.25	0.000569
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.265	0.003155
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.275	0.011236
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.301	0.001179
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.315	0.008475
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.326	0.001761
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.33	0.000421
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.356	0.008547
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.374	0.002375
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.389	0.006061
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.433	0.001425
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.44	0.00241
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.440	0.011765
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.462	0.008621
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.48	0.002874
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.1.519	0.00004
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.1.521	0.005348
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.55	0.012987
ORF1ab/nsp12	912	T912del	ACT	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.1.89	0.006061
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.110.3	0.000718
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.160	0.000031
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.160.14	0.002119
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.160.16	0.000929
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.160.26	0.002421
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.170	0.00431
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.177	0.000013
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.177.11	0.001698
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.15	0.000631
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.16	0.000664
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.24	0.001295
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.46	0.000918
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.50	0.004695
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.54	0.000606
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.56	0.000668
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.177.82	0.000477
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.199	0.004132
ORF1ab/nsp12	912	T912del2	aCT	a--	1	1	B.1.2	0.000009
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.210	0.002132
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.214.2	0.0006
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.214.3	0.007143
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.214.4	0.009091
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.240	0.000216
ORF1ab/nsp12	912	T912del	ACT	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.301	0.005917
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.305	0.002151
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.338	0.008621
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.351.5	0.0006
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.351.5	0.0006
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.36.1	0.00114
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.36.10	0.004785
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.36.16	0.001425
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.396	0.000706
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.397	0.004854
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.399	0.001934
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.1.403	0.003268
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.415.1	0.007576
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	B.1.429	0.000024
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.432	0.011236
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.433	0.003195
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.466.2	0.000391
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.544	0.006024
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.574	0.002151
ORF1ab/nsp12	912	T912del	ACT	---	1	1	B.1.585	0.027778
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.590	0.004545
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.606	0.006024
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	B.1.617.1	0.000129
ORF1ab/nsp12	912	T912F	ACt	TTt	1	1	B.1.617.2	0.000004
ORF1ab/nsp12	912	T912A	Act	Gct	1	1	B.1.617.2	0.000004
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.619	0.000871
ORF1ab/nsp12	912	T912N	aCt	aAt	1	1	B.1.621	0.000089
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.621	0.000089
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.634	0.003425
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.636	0.006711
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.1.78	0.008547
ORF1ab/nsp12	912	T912del	ACT	---	1	1	B.34	0.013699
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.35	0.007812
ORF1ab/nsp12	912	T912T	acT	acC	1	1	B.6	0.00091
ORF1ab/nsp12	912	T912I	aCt	aTt	1	1	B.6.6	0.000889
ORF1ab/nsp12	912	T912del	ACT	---	1	1	C.17	0.055556
ORF1ab/nsp12	912	T912T	acT	acC	1	1	C.35	0.000774
ORF1ab/nsp12	912	T912T	acT	acC	1	1	C.38	0.008065
ORF1ab/nsp12	912	T912T	acT	acC	1	1	P.1.13	0.000898
ORF1ab/nsp12	912	T912del1	acT	ac-	1	1	P.1.16	0.000374
ORF1ab/nsp12	912	T912T	acT	acC	1	1	P.3	0.001595
ORF1ab/nsp12	912	T912I	aCT	aTC	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.