CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 912 | T912T | T5304T | syn | acT | acC | 1145808 | 1145694 | 0.999901 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912T | T5304T | syn | acT | acA | 1145808 | 67 | 0.000058474 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912T | T5304T | syn | acT | acG | 1145808 | 47 | 0.0000410191 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912I | T5304I | nonsyn | aCT | aTC | 728 | 592 | 0.813187 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912I | T5304I | nonsyn | aCt | aTt | 728 | 136 | 0.186813 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912N | T5304N | nonsyn | aCt | aAt | 152 | 141 | 0.927632 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912N | T5304N | nonsyn | aCT | aAC | 152 | 11 | 0.0723684 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912del | T5304del | del | ACT | --- | 50 | 50 | 1 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912A | T5304A | nonsyn | Act | Gct | 32 | 30 | 0.9375 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912A | T5304A | nonsyn | AcT | GcC | 32 | 2 | 0.0625 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912del1 | T5304del1 | del | acT | ac- | 6 | 6 | 1 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912S | T5304S | nonsyn | Act | Tct | 2 | 2 | 1 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912del2 | T5304del2 | del | aCT | a-- | 1 | 1 | 1 | 16174-16176 |
ORF1ab/nsp12 | 912 | T912F | T5304F | nonsyn | ACt | TTt | 1 | 1 | 1 | 16174-16176 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1145694 | 1145808 | All | 0.219128 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 67 | 1145808 | All | 0.000013 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 47 | 1145808 | All | 0.000009 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1113950 | 1114001 | B.1.1.7 | 0.997234 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 51 | 1114001 | B.1.1.7 | 0.000046 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 7880 | 7880 | Q.1 | 0.995452 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6891 | 6891 | Q.3 | 0.99942 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5920 | 5920 | Q.8 | 0.976253 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3156 | 3156 | B.1.1 | 0.057253 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2198 | 2198 | Q.4 | 0.999545 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1625 | 1625 | Q.2 | 0.996933 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1391 | 1394 | B.1 | 0.012741 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 2 | 1394 | B.1 | 0.000018 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 1 | 1394 | B.1 | 0.000009 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 900 | 900 | Q.7 | 1 |
ORF1ab/nsp12 | 912 | T912I | aCT | aTC | 592 | 728 | All | 0.000113 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 136 | 728 | All | 0.000026 |
ORF1ab/nsp12 | 912 | T912I | aCT | aTC | 562 | 562 | B.1.1.7 | 0.000503 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 141 | 152 | All | 0.000027 |
ORF1ab/nsp12 | 912 | T912N | aCT | aAC | 11 | 152 | All | 0.000002 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 151 | 151 | Q.6 | 1 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 114 | 114 | B.1.177.73 | 0.064553 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 93 | 94 | B.1.351 | 0.002765 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 1 | 94 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 90 | 91 | B.1.177 | 0.001185 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 1 | 91 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 85 | 85 | B.1.576 | 0.077063 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 54 | 72 | B.1.2 | 0.000475 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 13 | 72 | B.1.2 | 0.000114 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 5 | 72 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 70 | 70 | B.1.221 | 0.004972 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 61 | 61 | AY.14 | 0.005369 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 59 | 59 | Q.5 | 1 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 53 | 53 | B | 0.006774 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 50 | 50 | All | 0.00001 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 49 | 49 | B.1.1.507 | 0.426087 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 49 | 49 | P.1 | 0.000772 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 47 | 47 | B.1.526 | 0.001105 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 43 | 43 | B.1.1.409 | 0.121813 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 35 | 40 | AY.4 | 0.000054 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 5 | 40 | AY.4 | 0.000008 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 37 | 37 | B.1.375 | 0.030328 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 23 | 33 | AY.43 | 0.000102 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 9 | 33 | AY.43 | 0.00004 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 1 | 33 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 30 | 32 | All | 0.000006 |
ORF1ab/nsp12 | 912 | T912A | AcT | GcC | 2 | 32 | All | 0 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 31 | 31 | AY.44 | 0.000189 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 28 | 31 | B.1.617.2 | 0.000105 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 3 | 31 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 912 | T912I | aCT | aTC | 29 | 29 | Q.1 | 0.003663 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 27 | 27 | B.1.1.312 | 0.051625 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 24 | 24 | B.1.1.161 | 0.084806 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 24 | 24 | B.1.596 | 0.002091 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 21 | 21 | B.1.1.528 | 0.100962 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 18 | 18 | B.1.1.519 | 0.000715 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 17 | 17 | B.1.609 | 0.00815 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 14 | 14 | B.1.1.220 | 0.026022 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 14 | 14 | P.1.1 | 0.004447 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 10 | 12 | AY.103 | 0.000062 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 2 | 12 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 11 | 11 | 0.611111 | |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp12 | 912 | T912N | aCT | aAC | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 11 | 11 | B.1.177.7 | 0.001813 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 10 | 10 | B.1.474 | 0.019011 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 10 | 10 | C.36.3 | 0.005672 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 9 | 9 | B.1.411 | 0.033333 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 7 | 7 | B.1.139 | 0.005132 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 6 | 7 | B.1.575 | 0.00182 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 7 | B.1.575 | 0.000303 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp12 | 912 | T912del1 | acT | ac- | 6 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | AY.30 | 0.002374 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 6 | AY.45 | 0.000487 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 2 | 6 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | B.1.1.39 | 0.003058 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | B.1.620 | 0.005676 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5 | 5 | B.1.1.10 | 0.005574 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5 | 5 | B.1.157 | 0.014925 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5 | 5 | B.1.564 | 0.002129 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 4 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 2 | 4 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.1.524 | 0.083333 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.177.31 | 0.045977 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.206 | 0.003263 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.580 | 0.01626 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 3 | 4 | B.1.628 | 0.001057 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 4 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | A | 0.001161 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.177.41 | 0.0075 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.533 | 0.028846 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 3 | 3 | B.1.633 | 0.125 |
ORF1ab/nsp12 | 912 | T912S | Act | Tct | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | AV.1 | 0.010101 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.299 | 0.02439 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.34 | 0.026316 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | B.1.1.391 | 0.017094 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.1.525 | 0.010929 |
ORF1ab/nsp12 | 912 | T912del1 | acT | ac- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 912 | T912A | AcT | GcC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 1 | 2 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 2 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.380 | 0.013245 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 2 | B.1.524 | 0.001406 |
ORF1ab/nsp12 | 912 | T912T | acT | acA | 1 | 2 | B.1.524 | 0.001406 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | B.1.599 | 0.007299 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 912 | T912del1 | acT | ac- | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | A.7 | 0.055556 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 912 | T912del2 | aCT | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 912 | T912F | ACt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 912 | T912S | Act | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp12 | 912 | T912T | acT | acG | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 912 | T912A | AcT | GcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 912 | T912S | Act | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 912 | T912del1 | acT | ac- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.55 | 0.012987 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp12 | 912 | T912del2 | aCT | a-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.214.4 | 0.009091 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 912 | T912F | ACt | TTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 912 | T912A | Act | Gct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 912 | T912N | aCt | aAt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 912 | T912I | aCt | aTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 912 | T912del | ACT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 912 | T912del1 | acT | ac- | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp12 | 912 | T912T | acT | acC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 912 | T912I | aCT | aTC | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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