CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 911 | N911N | N5303N | syn | aaC | aaT | 9030 | 9030 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911S | N5303S | nonsyn | aAc | aGc | 163 | 163 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911K | N5303K | nonsyn | aaC | aaA | 148 | 144 | 0.972973 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911K | N5303K | nonsyn | aaC | aaG | 148 | 4 | 0.027027 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911D | N5303D | nonsyn | Aac | Gac | 58 | 58 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911del | N5303del | del | AAC | --- | 43 | 43 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911T | N5303T | nonsyn | aAc | aCc | 24 | 24 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911H | N5303H | nonsyn | Aac | Cac | 7 | 7 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911del2 | N5303del2 | del | AAc | --c | 4 | 2 | 0.5 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911del2 | N5303del2 | del | AAC | --T | 4 | 1 | 0.25 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911del2 | N5303del2 | del | aAC | a-- | 4 | 1 | 0.25 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911del1 | N5303del1 | del | aaC | aa- | 2 | 2 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911V | N5303V | nonsyn | AAC | GTA | 1 | 1 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911I | N5303I | nonsyn | aAc | aTc | 1 | 1 | 1 | 16171-16173 |
ORF1ab/nsp12 | 911 | N911Y | N5303Y | nonsyn | Aac | Tac | 1 | 1 | 1 | 16171-16173 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 9030 | 9030 | All | 0.001727 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2728 | 2728 | B.1.1.7 | 0.002442 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2657 | 2657 | AY.4 | 0.004135 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 639 | 639 | B.1.2 | 0.005627 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 634 | 634 | B.1.564.1 | 1 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 484 | 484 | B.1.617.2 | 0.001822 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 270 | 270 | AY.25 | 0.001624 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 163 | 163 | All | 0.000031 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 163 | 163 | AY.43 | 0.000722 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 144 | 148 | All | 0.000028 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaG | 4 | 148 | All | 0.000001 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 136 | 136 | AY.3 | 0.001353 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 134 | 134 | AY.119 | 0.004731 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 113 | 113 | AY.20 | 0.004392 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 80 | 80 | AY.103 | 0.000497 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 62 | 62 | P.1 | 0.000977 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 58 | 58 | All | 0.000011 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 55 | 55 | B.1 | 0.000504 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 48 | 48 | AY.121 | 0.006495 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 44 | 44 | AY.46.2 | 0.027954 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 43 | 43 | All | 0.000008 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 41 | 41 | B.1.429 | 0.000965 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 39 | 39 | AY.44 | 0.000237 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 36 | 36 | AY.99 | 0.037775 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 34 | 34 | D.2 | 0.002551 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 33 | 33 | AY.66 | 0.035294 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 33 | 33 | P.1.16 | 0.012346 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 30 | 30 | B.1.621 | 0.002656 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 27 | 27 | B.1.1.208 | 0.329268 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 26 | 26 | AY.39 | 0.000642 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 24 | 24 | All | 0.000005 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 23 | 23 | Q.1 | 0.002906 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 22 | 22 | B.1.131 | 0.192982 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 22 | 22 | B.1.438.1 | 0.00236 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 16 | 16 | B.1.1.434 | 0.005577 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 14 | 14 | AY.107 | 0.006524 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 13 | 13 | AY.4.2 | 0.000282 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 12 | 12 | AY.74 | 0.001388 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 12 | 12 | B.1.177.7 | 0.001978 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 12 | 12 | P.1.15 | 0.002788 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 11 | 11 | B.1.525 | 0.001245 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 10 | 10 | AY.16 | 0.003797 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 9 | 9 | AY.35 | 0.002097 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 7 | 9 | B.1.1.7 | 0.000006 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaG | 2 | 9 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 8 | 8 | AY.10 | 0.00424 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 8 | 8 | AY.73 | 0.005323 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 8 | 8 | Q.6 | 0.05298 |
ORF1ab/nsp12 | 911 | N911H | Aac | Cac | 7 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 7 | 7 | P.1.13 | 0.006289 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 5 | 5 | A.2 | 0.003309 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 5 | 5 | B.1.1.243 | 0.020408 |
ORF1ab/nsp12 | 911 | N911H | Aac | Cac | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp12 | 911 | N911del2 | AAc | --c | 2 | 4 | All | 0 |
ORF1ab/nsp12 | 911 | N911del2 | AAC | --T | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 911 | N911del2 | aAC | a-- | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.177.10 | 0.003512 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.320 | 0.004981 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.36.22 | 0.004831 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 4 | 4 | C.18 | 0.010363 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 3 | 3 | B.1.1.198 | 0.004405 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp12 | 911 | N911del1 | aaC | aa- | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp12 | 911 | N911del2 | AAc | --c | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 911 | N911Y | Aac | Tac | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 911 | N911I | aAc | aTc | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 911 | N911V | AAC | GTA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 911 | N911H | Aac | Cac | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 911 | N911del2 | AAC | --T | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 911 | N911I | aAc | aTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 911 | N911del1 | aaC | aa- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.1.386 | 0.066667 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.1.453 | 0.008475 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 911 | N911Y | Aac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 911 | N911del1 | aaC | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 911 | N911V | AAC | GTA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.1.91 | 0.166667 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 911 | N911H | Aac | Cac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp12 | 911 | N911S | aAc | aGc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.507 | 0.011236 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 911 | N911del2 | aAC | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp12 | 911 | N911T | aAc | aCc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 911 | N911D | Aac | Gac | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 911 | N911N | aaC | aaT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp12 | 911 | N911del | AAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 911 | N911K | aaC | aaA | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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