CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 896

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12896T896TT5288TsynacAacG3893580.92030816126-16128
ORF1ab/nsp12896T896TT5288TsynacAacT389280.071979416126-16128
ORF1ab/nsp12896T896TT5288TsynacAacC38930.0077120816126-16128
ORF1ab/nsp12896T896IT5288InonsynaCaaTa215215116126-16128
ORF1ab/nsp12896T896delT5288deldelACA---4444116126-16128
ORF1ab/nsp12896T896AT5288AnonsynAcaGca3131116126-16128
ORF1ab/nsp12896T896KT5288KnonsynaCaaAa1313116126-16128
ORF1ab/nsp12896T896del2T5288del2delaCAa--33116126-16128
ORF1ab/nsp12896T896PT5288PnonsynAcaCca33116126-16128
ORF1ab/nsp12896T896NT5288NnonsynaCAaAT11116126-16128
ORF1ab/nsp12896T896del1T5288del1delaCaa-a11116126-16128

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12896T896TacAacG358389All0.000068
ORF1ab/nsp12896T896TacAacT28389All0.000005
ORF1ab/nsp12896T896TacAacC3389All0.000001
ORF1ab/nsp12896T896IaCaaTa215215All0.000041
ORF1ab/nsp12896T896TacAacG9193B.1.1.70.000081
ORF1ab/nsp12896T896TacAacT293B.1.1.70.000002
ORF1ab/nsp12896T896IaCaaTa7878AY.40.000121
ORF1ab/nsp12896T896TacAacG6868B.1.243.20.985507
ORF1ab/nsp12896T896delACA---4444All0.000008
ORF1ab/nsp12896T896TacAacG3939AY.40.000061
ORF1ab/nsp12896T896IaCaaTa3636AY.270.00233
ORF1ab/nsp12896T896AAcaGca3131All0.000006
ORF1ab/nsp12896T896delACA---2020B.1.1.70.000018
ORF1ab/nsp12896T896TacAacG1717B.10.000156
ORF1ab/nsp12896T896TacAacG1515AY.290.000237
ORF1ab/nsp12896T896IaCaaTa1515B.1.617.20.000056
ORF1ab/nsp12896T896KaCaaAa1313All0.000002
ORF1ab/nsp12896T896TacAacT1313B.1.5960.001133
ORF1ab/nsp12896T896TacAacG1212B.1.617.20.000045
ORF1ab/nsp12896T896TacAacT59B.1.20.000044
ORF1ab/nsp12896T896TacAacG49B.1.20.000035
ORF1ab/nsp12896T896IaCaaTa77AY.200.000272
ORF1ab/nsp12896T896IaCaaTa77AY.250.000042
ORF1ab/nsp12896T896TacAacG77AY.430.000031
ORF1ab/nsp12896T896TacAacG77B.1.10.000127
ORF1ab/nsp12896T896AAcaGca77B.1.2580.000466
ORF1ab/nsp12896T896IaCaaTa77B.1.6280.002467
ORF1ab/nsp12896T896IaCaaTa66AY.1030.000037
ORF1ab/nsp12896T896TacAacG56AY.440.00003
ORF1ab/nsp12896T896TacAacT16AY.440.000006
ORF1ab/nsp12896T896TacAacG66B.1.1770.000079
ORF1ab/nsp12896T896IaCaaTa66B.1.20.000053
ORF1ab/nsp12896T896TacAacG55AY.110.006693
ORF1ab/nsp12896T896delACA---55AY.40.000008
ORF1ab/nsp12896T896IaCaaTa55AY.440.00003
ORF1ab/nsp12896T896AAcaGca55B.1.20.000044
ORF1ab/nsp12896T896TacAacG44AY.1020.000106
ORF1ab/nsp12896T896TacAacG34AY.1180.000188
ORF1ab/nsp12896T896TacAacT14AY.1180.000063
ORF1ab/nsp12896T896TacAacG44AY.470.000124
ORF1ab/nsp12896T896AAcaGca44B.1.1.70.000004
ORF1ab/nsp12896T896KaCaaAa44B.1.1.70.000004
ORF1ab/nsp12896T896TacAacG44B.1.5260.000094
ORF1ab/nsp12896T896KaCaaAa330.166667
ORF1ab/nsp12896T896PAcaCca33All0.000001
ORF1ab/nsp12896T896del2aCAa--33All0.000001
ORF1ab/nsp12896T896TacAacG33AY.1030.000019
ORF1ab/nsp12896T896IaCaaTa33AY.1210.000406
ORF1ab/nsp12896T896TacAacG23AY.250.000012
ORF1ab/nsp12896T896TacAacT13AY.250.000006
ORF1ab/nsp12896T896IaCaaTa33AY.30.00003
ORF1ab/nsp12896T896IaCaaTa33AY.450.000365
ORF1ab/nsp12896T896TacAacC33AY.510.002727
ORF1ab/nsp12896T896IaCaaTa33AY.98.10.000145
ORF1ab/nsp12896T896IaCaaTa33B.10.000027
ORF1ab/nsp12896T896TacAacG33B.1.1.4130.02069
ORF1ab/nsp12896T896IaCaaTa33B.1.1.70.000003
ORF1ab/nsp12896T896AAcaGca33B.1.1600.000094
ORF1ab/nsp12896T896TacAacG33B.1.3510.000089
ORF1ab/nsp12896T896AAcaGca33B.1.617.20.000011
ORF1ab/nsp12896T896TacAacG33C.370.000348
ORF1ab/nsp12896T896AAcaGca22AY.1030.000012
ORF1ab/nsp12896T896TacAacG22AY.1070.000932
ORF1ab/nsp12896T896IaCaaTa22AY.290.000032
ORF1ab/nsp12896T896TacAacG22AY.30.00002
ORF1ab/nsp12896T896delACA---22AY.4.50.000215
ORF1ab/nsp12896T896IaCaaTa22AY.430.000009
ORF1ab/nsp12896T896IaCaaTa22AY.550.001835
ORF1ab/nsp12896T896IaCaaTa22AY.580.001815
ORF1ab/nsp12896T896TacAacG22AY.610.00021
ORF1ab/nsp12896T896del2aCAa--22B.1.1.70.000002
ORF1ab/nsp12896T896delACA---22B.1.1.700.000682
ORF1ab/nsp12896T896delACA---22B.1.1770.000026
ORF1ab/nsp12896T896TacAacG22B.1.177.180.00232
ORF1ab/nsp12896T896delACA---22B.1.177.540.001213
ORF1ab/nsp12896T896TacAacG22B.1.2210.000142
ORF1ab/nsp12896T896TacAacG22B.1.5170.000854
ORF1ab/nsp12896T896TacAacT110.055556
ORF1ab/nsp12896T896NaCAaAT110.055556
ORF1ab/nsp12896T896IaCaaTa11A0.000387
ORF1ab/nsp12896T896TacAacT11A.20.000662
ORF1ab/nsp12896T896AAcaGca11AK.20.045455
ORF1ab/nsp12896T896del1aCaa-a11All0
ORF1ab/nsp12896T896NaCAaAT11All0
ORF1ab/nsp12896T896IaCaaTa11AY.1000.000046
ORF1ab/nsp12896T896TacAacG11AY.1000.000046
ORF1ab/nsp12896T896IaCaaTa11AY.1020.000027
ORF1ab/nsp12896T896TacAacG11AY.1040.001984
ORF1ab/nsp12896T896TacAacG11AY.1060.000335
ORF1ab/nsp12896T896TacAacG11AY.1160.000287
ORF1ab/nsp12896T896TacAacG11AY.120.000316
ORF1ab/nsp12896T896TacAacG11AY.1210.000135
ORF1ab/nsp12896T896TacAacG11AY.200.000039
ORF1ab/nsp12896T896delACA---11AY.250.000006
ORF1ab/nsp12896T896TacAacG11AY.260.000028
ORF1ab/nsp12896T896IaCaaTa11AY.260.000028
ORF1ab/nsp12896T896TacAacG11AY.270.000065
ORF1ab/nsp12896T896KaCaaAa11AY.30.00001
ORF1ab/nsp12896T896PAcaCca11AY.330.000067
ORF1ab/nsp12896T896IaCaaTa11AY.340.000097
ORF1ab/nsp12896T896TacAacG11AY.390.000025
ORF1ab/nsp12896T896IaCaaTa11AY.39.10.00004
ORF1ab/nsp12896T896TacAacG11AY.39.10.00004
ORF1ab/nsp12896T896AAcaGca11AY.40.000002
ORF1ab/nsp12896T896TacAacT11AY.4.50.000107
ORF1ab/nsp12896T896PAcaCca11AY.4.50.000107
ORF1ab/nsp12896T896AAcaGca11AY.430.000004
ORF1ab/nsp12896T896delACA---11AY.430.000004
ORF1ab/nsp12896T896AAcaGca11AY.440.000006
ORF1ab/nsp12896T896PAcaCca11AY.440.000006
ORF1ab/nsp12896T896TacAacG11AY.450.000122
ORF1ab/nsp12896T896TacAacT11AY.46.20.000635
ORF1ab/nsp12896T896IaCaaTa11AY.46.40.000165
ORF1ab/nsp12896T896TacAacG11AY.46.60.000072
ORF1ab/nsp12896T896TacAacG11AY.50.000021
ORF1ab/nsp12896T896TacAacG11AY.580.000907
ORF1ab/nsp12896T896IaCaaTa11AY.590.00053
ORF1ab/nsp12896T896TacAacG11AY.650.000533
ORF1ab/nsp12896T896TacAacG11AY.750.000056
ORF1ab/nsp12896T896TacAacG11AY.850.000427
ORF1ab/nsp12896T896TacAacG11AY.90.000068
ORF1ab/nsp12896T896delACA---11AY.90.000068
ORF1ab/nsp12896T896IaCaaTa11AY.9.20.000037
ORF1ab/nsp12896T896KaCaaAa11B.1.10.000018
ORF1ab/nsp12896T896delACA---11B.1.10.000018
ORF1ab/nsp12896T896IaCaaTa11B.1.10.000018
ORF1ab/nsp12896T896KaCaaAa11B.1.1.1280.007092
ORF1ab/nsp12896T896TacAacG11B.1.1.2140.000055
ORF1ab/nsp12896T896IaCaaTa11B.1.1.2160.00089
ORF1ab/nsp12896T896delACA---11B.1.1.2320.001815
ORF1ab/nsp12896T896TacAacG11B.1.1.3010.001179
ORF1ab/nsp12896T896delACA---11B.1.1.3110.000358
ORF1ab/nsp12896T896AAcaGca11B.1.1.370.000193
ORF1ab/nsp12896T896TacAacG11B.1.1.3770.001381
ORF1ab/nsp12896T896TacAacG11B.1.1.390.00051
ORF1ab/nsp12896T896IaCaaTa11B.1.1.4160.000905
ORF1ab/nsp12896T896TacAacG11B.1.1.700.000341
ORF1ab/nsp12896T896IaCaaTa11B.1.1600.000031
ORF1ab/nsp12896T896IaCaaTa11B.1.1770.000013
ORF1ab/nsp12896T896TacAacG11B.1.177.120.000152
ORF1ab/nsp12896T896delACA---11B.1.177.150.000631
ORF1ab/nsp12896T896delACA---11B.1.177.40.000211
ORF1ab/nsp12896T896TacAacG11B.1.177.60.000977
ORF1ab/nsp12896T896del1aCaa-a11B.1.20.000009
ORF1ab/nsp12896T896KaCaaAa11B.1.20.000009
ORF1ab/nsp12896T896IaCaaTa11B.1.2340.000132
ORF1ab/nsp12896T896TacAacG11B.1.2430.00007
ORF1ab/nsp12896T896TacAacG11B.1.2580.000067
ORF1ab/nsp12896T896IaCaaTa11B.1.2580.000067
ORF1ab/nsp12896T896delACA---11B.1.258.100.011364
ORF1ab/nsp12896T896IaCaaTa11B.1.258.170.000104
ORF1ab/nsp12896T896IaCaaTa11B.1.360.000146
ORF1ab/nsp12896T896TacAacG11B.1.36.170.000494
ORF1ab/nsp12896T896TacAacT11B.1.3810.007812
ORF1ab/nsp12896T896IaCaaTa11B.1.416.10.001563
ORF1ab/nsp12896T896TacAacG11B.1.4270.00005
ORF1ab/nsp12896T896TacAacG11B.1.4290.000024
ORF1ab/nsp12896T896IaCaaTa11B.1.4290.000024
ORF1ab/nsp12896T896AAcaGca11B.1.4290.000024
ORF1ab/nsp12896T896IaCaaTa11B.1.5770.000687
ORF1ab/nsp12896T896delACA---11B.1.5820.000491
ORF1ab/nsp12896T896del2aCAa--11B.1.5850.027778
ORF1ab/nsp12896T896TacAacG11B.1.617.10.000129
ORF1ab/nsp12896T896KaCaaAa11B.1.617.20.000004
ORF1ab/nsp12896T896AAcaGca11B.1.6210.000089
ORF1ab/nsp12896T896TacAacG11B.1.6370.000073
ORF1ab/nsp12896T896IaCaaTa11B.280.003279
ORF1ab/nsp12896T896delACA---11B.340.013699
ORF1ab/nsp12896T896TacAacG11B.380.02381
ORF1ab/nsp12896T896KaCaaAa11C.170.055556
ORF1ab/nsp12896T896TacAacG11C.260.007353
ORF1ab/nsp12896T896TacAacG11D.20.000075
ORF1ab/nsp12896T896TacAacG11P.10.000016
ORF1ab/nsp12896T896TacAacG11P.1.10.000318
ORF1ab/nsp12896T896TacAacG11P.1.130.000898
ORF1ab/nsp12896T896TacAacG11P.20.000187
ORF1ab/nsp12896T896TacAacG11Q.10.000126