CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 882

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12882H882RH5274RnonsyncAtcGt11021102116084-16086
ORF1ab/nsp12882H882YH5274YnonsynCatTat308308116084-16086
ORF1ab/nsp12882H882HH5274HsyncaTcaC306306116084-16086
ORF1ab/nsp12882H882delH5274deldelCAT---7676116084-16086
ORF1ab/nsp12882H882NH5274NnonsynCatAat2828116084-16086
ORF1ab/nsp12882H882QH5274QnonsyncaTcaG12110.91666716084-16086
ORF1ab/nsp12882H882QH5274QnonsyncaTcaA1210.083333316084-16086
ORF1ab/nsp12882H882LH5274LnonsyncAtcTt1090.916084-16086
ORF1ab/nsp12882H882LH5274LnonsyncATcTC1010.116084-16086
ORF1ab/nsp12882H882del1H5274del1delcaTca-640.66666716084-16086
ORF1ab/nsp12882H882del1H5274del1delCat-at610.16666716084-16086
ORF1ab/nsp12882H882del1H5274del1delcAtc-t610.16666716084-16086
ORF1ab/nsp12882H882DH5274DnonsynCatGat22116084-16086
ORF1ab/nsp12882H882GH5274GnonsynCAtGGt11116084-16086
ORF1ab/nsp12882H882SH5274SnonsynCATTCA11116084-16086
ORF1ab/nsp12882H882FH5274FnonsynCATTTC11116084-16086
ORF1ab/nsp12882H882PH5274PnonsyncAtcCt11116084-16086
ORF1ab/nsp12882H882del2H5274del2delCAt--t11116084-16086

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12882H882RcAtcGt11021102All0.000211
ORF1ab/nsp12882H882RcAtcGt465465B.10.004259
ORF1ab/nsp12882H882RcAtcGt451451B.1.1270.991209
ORF1ab/nsp12882H882YCatTat308308All0.000059
ORF1ab/nsp12882H882HcaTcaC306306All0.000059
ORF1ab/nsp12882H882HcaTcaC175175B.1.1.70.000157
ORF1ab/nsp12882H882delCAT---7676All0.000015
ORF1ab/nsp12882H882RcAtcGt5454AY.250.000325
ORF1ab/nsp12882H882RcAtcGt5454AY.40.000084
ORF1ab/nsp12882H882YCatTat3434B.1.1.2530.085213
ORF1ab/nsp12882H882delCAT---3333B.1.1.70.00003
ORF1ab/nsp12882H882YCatTat3232A0.012384
ORF1ab/nsp12882H882YCatTat3030AY.30.000298
ORF1ab/nsp12882H882NCatAat2828All0.000005
ORF1ab/nsp12882H882YCatTat2525B.1.1.70.000022
ORF1ab/nsp12882H882YCatTat2525Q.70.027778
ORF1ab/nsp12882H882RcAtcGt1717B.1.617.20.000064
ORF1ab/nsp12882H882YCatTat1515AY.40.000023
ORF1ab/nsp12882H882HcaTcaC1414B.1.2760.237288
ORF1ab/nsp12882H882QcaTcaG1112All0.000002
ORF1ab/nsp12882H882QcaTcaA112All0
ORF1ab/nsp12882H882HcaTcaC1212AY.250.000072
ORF1ab/nsp12882H882YCatTat1111B.10.000101
ORF1ab/nsp12882H882HcaTcaC1111B.1.617.20.000041
ORF1ab/nsp12882H882LcAtcTt910All0.000002
ORF1ab/nsp12882H882LcATcTC110All0
ORF1ab/nsp12882H882HcaTcaC1010AY.1030.000062
ORF1ab/nsp12882H882NCatAat1010B.1.5250.001132
ORF1ab/nsp12882H882YCatTat99AY.230.000628
ORF1ab/nsp12882H882HcaTcaC99AY.40.000014
ORF1ab/nsp12882H882HcaTcaC88B.1.4290.000188
ORF1ab/nsp12882H882YCatTat88B.1.617.20.00003
ORF1ab/nsp12882H882HcaTcaC77AY.270.000453
ORF1ab/nsp12882H882YCatTat77AY.90.000473
ORF1ab/nsp12882H882YCatTat77B.1.20.000062
ORF1ab/nsp12882H882del1caTca-46All0.000001
ORF1ab/nsp12882H882del1cAtc-t16All0
ORF1ab/nsp12882H882del1Cat-at16All0
ORF1ab/nsp12882H882RcAtcGt66AY.1030.000037
ORF1ab/nsp12882H882delCAT---66AY.250.000036
ORF1ab/nsp12882H882RcAtcGt66AY.330.000401
ORF1ab/nsp12882H882RcAtcGt66AY.4.20.00013
ORF1ab/nsp12882H882YCatTat66AY.440.000037
ORF1ab/nsp12882H882RcAtcGt66B.1.1.70.000005
ORF1ab/nsp12882H882YCatTat66B.1.177.40.001266
ORF1ab/nsp12882H882HcaTcaC66B.1.20.000053
ORF1ab/nsp12882H882delCAT---55AY.40.000008
ORF1ab/nsp12882H882YCatTat55AY.430.000022
ORF1ab/nsp12882H882NCatAat55B.10.000046
ORF1ab/nsp12882H882YCatTat55B.1.351.30.004382
ORF1ab/nsp12882H882YCatTat44B.1.1.2550.012121
ORF1ab/nsp12882H882QcaTcaG44B.1.160.310.032258
ORF1ab/nsp12882H882RcAtcGt44B.1.1770.000053
ORF1ab/nsp12882H882YCatTat44B.1.1770.000053
ORF1ab/nsp12882H882YCatTat44B.1.5260.000094
ORF1ab/nsp12882H882QcaTcaG44B.1.617.20.000015
ORF1ab/nsp12882H882YCatTat44C.370.000464
ORF1ab/nsp12882H882YCatTat33AY.1030.000019
ORF1ab/nsp12882H882YCatTat33AY.1130.000427
ORF1ab/nsp12882H882delCAT---33AY.4.50.000322
ORF1ab/nsp12882H882delCAT---33AY.430.000013
ORF1ab/nsp12882H882YCatTat33AY.450.000365
ORF1ab/nsp12882H882YCatTat33AY.470.000093
ORF1ab/nsp12882H882YCatTat33AY.50.000062
ORF1ab/nsp12882H882HcaTcaC33AY.740.000347
ORF1ab/nsp12882H882RcAtcGt33AY.850.001282
ORF1ab/nsp12882H882YCatTat33B.1.10.000054
ORF1ab/nsp12882H882HcaTcaC33B.1.1.2200.005576
ORF1ab/nsp12882H882YCatTat33B.1.1.3180.000905
ORF1ab/nsp12882H882delCAT---33B.1.1770.00004
ORF1ab/nsp12882H882LcAtcTt33B.1.20.000026
ORF1ab/nsp12882H882RcAtcGt33B.1.2930.0375
ORF1ab/nsp12882H882YCatTat33B.1.36.10.003421
ORF1ab/nsp12882H882HcaTcaC33C.370.000348
ORF1ab/nsp12882H882DCatGat22All0
ORF1ab/nsp12882H882RcAtcGt22AY.1020.000053
ORF1ab/nsp12882H882HcaTcaC22AY.1110.000366
ORF1ab/nsp12882H882YCatTat22AY.1190.000071
ORF1ab/nsp12882H882HcaTcaC22AY.200.000078
ORF1ab/nsp12882H882YCatTat22AY.250.000012
ORF1ab/nsp12882H882HcaTcaC22AY.290.000032
ORF1ab/nsp12882H882YCatTat22AY.290.000032
ORF1ab/nsp12882H882RcAtcGt22AY.30.00002
ORF1ab/nsp12882H882HcaTcaC22AY.30.00002
ORF1ab/nsp12882H882RcAtcGt22AY.340.000194
ORF1ab/nsp12882H882YCatTat22AY.390.000049
ORF1ab/nsp12882H882YCatTat22AY.420.00008
ORF1ab/nsp12882H882RcAtcGt22AY.430.000009
ORF1ab/nsp12882H882NCatAat22AY.430.000009
ORF1ab/nsp12882H882HcaTcaC22AY.440.000012
ORF1ab/nsp12882H882YCatTat22AY.60.000082
ORF1ab/nsp12882H882YCatTat22AY.840.000875
ORF1ab/nsp12882H882YCatTat22AY.950.001522
ORF1ab/nsp12882H882HcaTcaC22AY.98.10.000097
ORF1ab/nsp12882H882HcaTcaC22B.10.000018
ORF1ab/nsp12882H882LcAtcTt12B.10.000009
ORF1ab/nsp12882H882LcATcTC12B.10.000009
ORF1ab/nsp12882H882delCAT---22B.1.10.000036
ORF1ab/nsp12882H882HcaTcaC22B.1.1.3180.000604
ORF1ab/nsp12882H882HcaTcaC22B.1.1.3290.007692
ORF1ab/nsp12882H882LcAtcTt22B.1.1.70.000002
ORF1ab/nsp12882H882delCAT---22B.1.1.700.000682
ORF1ab/nsp12882H882delCAT---22B.1.177.540.001213
ORF1ab/nsp12882H882HcaTcaC22B.1.3510.000059
ORF1ab/nsp12882H882HcaTcaC22B.1.36.290.001035
ORF1ab/nsp12882H882YCatTat22B.1.3670.001585
ORF1ab/nsp12882H882YCatTat22B.1.4290.000047
ORF1ab/nsp12882H882YCatTat22B.1.5640.000852
ORF1ab/nsp12882H882delCAT---22B.1.617.20.000008
ORF1ab/nsp12882H882YCatTat22P.20.000373
ORF1ab/nsp12882H882HcaTcaC22R.10.00018
ORF1ab/nsp12882H882NCatAat11A0.000387
ORF1ab/nsp12882H882FCATTTC11All0
ORF1ab/nsp12882H882del2CAt--t11All0
ORF1ab/nsp12882H882GCAtGGt11All0
ORF1ab/nsp12882H882SCATTCA11All0
ORF1ab/nsp12882H882PcAtcCt11All0
ORF1ab/nsp12882H882YCatTat11AY.1020.000027
ORF1ab/nsp12882H882NCatAat11AY.1030.000006
ORF1ab/nsp12882H882YCatTat11AY.1100.000113
ORF1ab/nsp12882H882delCAT---11AY.1110.000183
ORF1ab/nsp12882H882RcAtcGt11AY.1130.000142
ORF1ab/nsp12882H882YCatTat11AY.1160.000287
ORF1ab/nsp12882H882RcAtcGt11AY.1180.000063
ORF1ab/nsp12882H882YCatTat11AY.1180.000063
ORF1ab/nsp12882H882HcaTcaC11AY.1190.000035
ORF1ab/nsp12882H882RcAtcGt11AY.1200.000037
ORF1ab/nsp12882H882HcaTcaC11AY.140.000088
ORF1ab/nsp12882H882RcAtcGt11AY.160.00038
ORF1ab/nsp12882H882HcaTcaC11AY.16.10.00047
ORF1ab/nsp12882H882RcAtcGt11AY.16.10.00047
ORF1ab/nsp12882H882RcAtcGt11AY.200.000039
ORF1ab/nsp12882H882YCatTat11AY.200.000039
ORF1ab/nsp12882H882RcAtcGt11AY.23.10.000417
ORF1ab/nsp12882H882FCATTTC11AY.250.000006
ORF1ab/nsp12882H882NCatAat11AY.250.000006
ORF1ab/nsp12882H882delCAT---11AY.290.000016
ORF1ab/nsp12882H882RcAtcGt11AY.29.10.000221
ORF1ab/nsp12882H882QcaTcaG11AY.30.00001
ORF1ab/nsp12882H882HcaTcaC11AY.330.000067
ORF1ab/nsp12882H882HcaTcaC11AY.390.000025
ORF1ab/nsp12882H882LcAtcTt11AY.40.000002
ORF1ab/nsp12882H882HcaTcaC11AY.4.20.000022
ORF1ab/nsp12882H882HcaTcaC11AY.430.000004
ORF1ab/nsp12882H882RcAtcGt11AY.440.000006
ORF1ab/nsp12882H882SCATTCA11AY.440.000006
ORF1ab/nsp12882H882HcaTcaC11AY.450.000122
ORF1ab/nsp12882H882RcAtcGt11AY.450.000122
ORF1ab/nsp12882H882HcaTcaC11AY.460.000104
ORF1ab/nsp12882H882HcaTcaC11AY.46.60.000072
ORF1ab/nsp12882H882YCatTat11AY.46.60.000072
ORF1ab/nsp12882H882RcAtcGt11AY.50.000021
ORF1ab/nsp12882H882HcaTcaC11AY.50.000021
ORF1ab/nsp12882H882delCAT---11AY.5.30.000337
ORF1ab/nsp12882H882NCatAat11AY.520.000814
ORF1ab/nsp12882H882YCatTat11AY.590.00053
ORF1ab/nsp12882H882YCatTat11AY.680.000274
ORF1ab/nsp12882H882delCAT---11AY.90.000068
ORF1ab/nsp12882H882YCatTat11AY.98.10.000048
ORF1ab/nsp12882H882delCAT---11AY.990.001049
ORF1ab/nsp12882H882RcAtcGt11AY.99.20.000092
ORF1ab/nsp12882H882YCatTat11B0.000128
ORF1ab/nsp12882H882NCatAat11B0.000128
ORF1ab/nsp12882H882QcaTcaG11B.10.000009
ORF1ab/nsp12882H882del1Cat-at11B.10.000009
ORF1ab/nsp12882H882delCAT---11B.10.000009
ORF1ab/nsp12882H882DCatGat11B.10.000009
ORF1ab/nsp12882H882HcaTcaC11B.1.10.000018
ORF1ab/nsp12882H882NCatAat11B.1.10.000018
ORF1ab/nsp12882H882YCatTat11B.1.1.1890.001513
ORF1ab/nsp12882H882YCatTat11B.1.1.1920.002309
ORF1ab/nsp12882H882YCatTat11B.1.1.2140.000055
ORF1ab/nsp12882H882delCAT---11B.1.1.2320.001815
ORF1ab/nsp12882H882HcaTcaC11B.1.1.270.00565
ORF1ab/nsp12882H882HcaTcaC11B.1.1.2940.001266
ORF1ab/nsp12882H882delCAT---11B.1.1.3110.000358
ORF1ab/nsp12882H882RcAtcGt11B.1.1.4640.001473
ORF1ab/nsp12882H882del1caTca-11B.1.1.70.000001
ORF1ab/nsp12882H882RcAtcGt11B.1.1600.000031
ORF1ab/nsp12882H882delCAT---11B.1.177.150.000631
ORF1ab/nsp12882H882del1caTca-11B.1.177.440.000519
ORF1ab/nsp12882H882LcAtcTt11B.1.177.650.000665
ORF1ab/nsp12882H882NCatAat11B.1.20.000009
ORF1ab/nsp12882H882RcAtcGt11B.1.20.000009
ORF1ab/nsp12882H882del1cAtc-t11B.1.20.000009
ORF1ab/nsp12882H882QcaTcaA11B.1.20.000009
ORF1ab/nsp12882H882del2CAt--t11B.1.20.000009
ORF1ab/nsp12882H882del1caTca-11B.1.2060.000816
ORF1ab/nsp12882H882DCatGat11B.1.2210.000071
ORF1ab/nsp12882H882YCatTat11B.1.2340.000132
ORF1ab/nsp12882H882LcAtcTt11B.1.2360.002053
ORF1ab/nsp12882H882YCatTat11B.1.2580.000067
ORF1ab/nsp12882H882delCAT---11B.1.258.100.011364
ORF1ab/nsp12882H882NCatAat11B.1.2600.003344
ORF1ab/nsp12882H882NCatAat11B.1.3010.005917
ORF1ab/nsp12882H882HcaTcaC11B.1.3110.000275
ORF1ab/nsp12882H882PcAtcCt11B.1.3380.008621
ORF1ab/nsp12882H882YCatTat11B.1.3510.00003
ORF1ab/nsp12882H882YCatTat11B.1.360.000146
ORF1ab/nsp12882H882del1caTca-11B.1.3690.000285
ORF1ab/nsp12882H882HcaTcaC11B.1.3960.000706
ORF1ab/nsp12882H882YCatTat11B.1.4970.000315
ORF1ab/nsp12882H882HcaTcaC11B.1.5250.000113
ORF1ab/nsp12882H882NCatAat11B.1.5640.000426
ORF1ab/nsp12882H882RcAtcGt11B.1.5990.00365
ORF1ab/nsp12882H882QcaTcaG11B.1.6090.000479
ORF1ab/nsp12882H882HcaTcaC11B.1.617.10.000129
ORF1ab/nsp12882H882GCAtGGt11B.1.617.20.000004
ORF1ab/nsp12882H882RcAtcGt11B.1.6210.000089
ORF1ab/nsp12882H882HcaTcaC11B.1.6210.000089
ORF1ab/nsp12882H882delCAT---11B.1.6210.000089
ORF1ab/nsp12882H882NCatAat11B.1.6230.000536
ORF1ab/nsp12882H882delCAT---11B.1.6300.005236
ORF1ab/nsp12882H882RcAtcGt11B.30.000831
ORF1ab/nsp12882H882delCAT---11B.340.013699
ORF1ab/nsp12882H882YCatTat11B.400.000364
ORF1ab/nsp12882H882delCAT---11C.170.055556
ORF1ab/nsp12882H882HcaTcaC11D.20.000075
ORF1ab/nsp12882H882RcAtcGt11P.1.140.000048
ORF1ab/nsp12882H882HcaTcaC11P.20.000187
ORF1ab/nsp12882H882delCAT---11Q.20.000613