CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 879 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12879D879AD5271AnonsyngAtgCt4949116075-16077

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12879D879AgAtgCt4949All0.000009
ORF1ab/nsp12879D879AgAtgCt1111B.1.1.70.00001
ORF1ab/nsp12879D879AgAtgCt66AY.40.000009
ORF1ab/nsp12879D879AgAtgCt33B.1.617.20.000011
ORF1ab/nsp12879D879AgAtgCt22AY.1200.000074
ORF1ab/nsp12879D879AgAtgCt22AY.4.50.000215
ORF1ab/nsp12879D879AgAtgCt22AY.430.000009
ORF1ab/nsp12879D879AgAtgCt22AY.440.000012
ORF1ab/nsp12879D879AgAtgCt22AY.75.10.000361
ORF1ab/nsp12879D879AgAtgCt22B.1.1770.000026
ORF1ab/nsp12879D879AgAtgCt22B.1.3510.000059
ORF1ab/nsp12879D879AgAtgCt22C.360.001821
ORF1ab/nsp12879D879AgAtgCt11AY.1030.000006
ORF1ab/nsp12879D879AgAtgCt11AY.200.000039
ORF1ab/nsp12879D879AgAtgCt11AY.260.000028
ORF1ab/nsp12879D879AgAtgCt11AY.420.00004
ORF1ab/nsp12879D879AgAtgCt11AY.46.50.000198
ORF1ab/nsp12879D879AgAtgCt11AY.50.000021
ORF1ab/nsp12879D879AgAtgCt11B.10.000009
ORF1ab/nsp12879D879AgAtgCt11B.1.1.3690.000446
ORF1ab/nsp12879D879AgAtgCt11B.1.1.5190.00004
ORF1ab/nsp12879D879AgAtgCt11B.1.4000.000429
ORF1ab/nsp12879D879AgAtgCt11B.1.6210.000089
ORF1ab/nsp12879D879AgAtgCt11B.1.810.021277
ORF1ab/nsp12879D879AgAtgCt11N.30.005814

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.