CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 879 & Codon = Aat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12879D879ND5271NnonsynGatAat1302913029116075-16077

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12879D879NGatAat1302913029All0.002492
ORF1ab/nsp12879D879NGatAat1217212172AY.40.018945
ORF1ab/nsp12879D879NGatAat320320AY.980.025278
ORF1ab/nsp12879D879NGatAat234234B.1.617.20.000881
ORF1ab/nsp12879D879NGatAat108108AY.430.000478
ORF1ab/nsp12879D879NGatAat7474AY.390.001829
ORF1ab/nsp12879D879NGatAat1818AY.420.000724
ORF1ab/nsp12879D879NGatAat1414B.1.1.70.000013
ORF1ab/nsp12879D879NGatAat1111AY.920.00316
ORF1ab/nsp12879D879NGatAat99AY.440.000055
ORF1ab/nsp12879D879NGatAat88AY.470.000249
ORF1ab/nsp12879D879NGatAat66AY.640.003571
ORF1ab/nsp12879D879NGatAat66B.1.6250.014118
ORF1ab/nsp12879D879NGatAat44AY.450.000487
ORF1ab/nsp12879D879NGatAat33AY.250.000018
ORF1ab/nsp12879D879NGatAat33AY.540.000286
ORF1ab/nsp12879D879NGatAat33B.10.000027
ORF1ab/nsp12879D879NGatAat33B.1.3190.009146
ORF1ab/nsp12879D879NGatAat22AY.460.000208
ORF1ab/nsp12879D879NGatAat22AY.840.000875
ORF1ab/nsp12879D879NGatAat22B.1.3810.015625
ORF1ab/nsp12879D879NGatAat11AY.1030.000006
ORF1ab/nsp12879D879NGatAat11AY.1100.000113
ORF1ab/nsp12879D879NGatAat11AY.1180.000063
ORF1ab/nsp12879D879NGatAat11AY.1200.000037
ORF1ab/nsp12879D879NGatAat11AY.140.000088
ORF1ab/nsp12879D879NGatAat11AY.230.00007
ORF1ab/nsp12879D879NGatAat11AY.30.00001
ORF1ab/nsp12879D879NGatAat11AY.4.20.000022
ORF1ab/nsp12879D879NGatAat11AY.4.2.10.000149
ORF1ab/nsp12879D879NGatAat11AY.410.000294
ORF1ab/nsp12879D879NGatAat11AY.46.60.000072
ORF1ab/nsp12879D879NGatAat11AY.50.000021
ORF1ab/nsp12879D879NGatAat11AY.520.000814
ORF1ab/nsp12879D879NGatAat11AY.610.000105
ORF1ab/nsp12879D879NGatAat11AY.70.000196
ORF1ab/nsp12879D879NGatAat11AY.710.000475
ORF1ab/nsp12879D879NGatAat11AY.75.10.00018
ORF1ab/nsp12879D879NGatAat11AY.880.000884
ORF1ab/nsp12879D879NGatAat11B.1.10.000018
ORF1ab/nsp12879D879NGatAat11B.1.110.30.000718
ORF1ab/nsp12879D879NGatAat11B.1.20.000009
ORF1ab/nsp12879D879NGatAat11B.1.2400.000216
ORF1ab/nsp12879D879NGatAat11B.1.2980.002114
ORF1ab/nsp12879D879NGatAat11B.1.5260.000024
ORF1ab/nsp12879D879NGatAat11B.1.6200.000946
ORF1ab/nsp12879D879NGatAat11B.6.60.000889
ORF1ab/nsp12879D879NGatAat11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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