CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 879

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12879D879ND5271NnonsynGatAat1302913029116075-16077
ORF1ab/nsp12879D879YD5271YnonsynGatTat68866886116075-16077
ORF1ab/nsp12879D879GD5271GnonsyngAtgGt909909116075-16077
ORF1ab/nsp12879D879DD5271DsyngaTgaC602602116075-16077
ORF1ab/nsp12879D879delD5271deldelGAT---6666116075-16077
ORF1ab/nsp12879D879AD5271AnonsyngAtgCt4949116075-16077
ORF1ab/nsp12879D879VD5271VnonsyngAtgTt2121116075-16077
ORF1ab/nsp12879D879HD5271HnonsynGatCat99116075-16077
ORF1ab/nsp12879D879del1D5271del1delgaTga-650.83333316075-16077
ORF1ab/nsp12879D879del1D5271del1delGat-at610.16666716075-16077
ORF1ab/nsp12879D879ED5271EnonsyngaTgaA540.816075-16077
ORF1ab/nsp12879D879ED5271EnonsyngaTgaG510.216075-16077
ORF1ab/nsp12879D879del2D5271del2delgATg--22116075-16077
ORF1ab/nsp12879D879CD5271CnonsynGAtTGt11116075-16077
ORF1ab/nsp12879D879TD5271TnonsynGAtACt11116075-16077

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12879D879NGatAat1302913029All0.002492
ORF1ab/nsp12879D879NGatAat1217212172AY.40.018945
ORF1ab/nsp12879D879YGatTat68866886All0.001317
ORF1ab/nsp12879D879YGatTat37013701AY.40.00576
ORF1ab/nsp12879D879GgAtgGt909909All0.000174
ORF1ab/nsp12879D879YGatTat665665B.1.617.20.002504
ORF1ab/nsp12879D879DgaTgaC602602All0.000115
ORF1ab/nsp12879D879NGatAat320320AY.980.025278
ORF1ab/nsp12879D879YGatTat281281B.1.1.70.000252
ORF1ab/nsp12879D879YGatTat237237B.1.1770.003121
ORF1ab/nsp12879D879NGatAat234234B.1.617.20.000881
ORF1ab/nsp12879D879DgaTgaC224224AY.40.000349
ORF1ab/nsp12879D879YGatTat223223AY.1030.001385
ORF1ab/nsp12879D879GgAtgGt185185AY.40.000288
ORF1ab/nsp12879D879GgAtgGt183183B.1.1.2220.037332
ORF1ab/nsp12879D879GgAtgGt165165B.1.1.70.000148
ORF1ab/nsp12879D879DgaTgaC159159C.37.10.41623
ORF1ab/nsp12879D879YGatTat109109AY.430.000483
ORF1ab/nsp12879D879NGatAat108108AY.430.000478
ORF1ab/nsp12879D879YGatTat9696B.1.3510.002854
ORF1ab/nsp12879D879YGatTat9494AY.1190.003319
ORF1ab/nsp12879D879YGatTat8989AY.250.000535
ORF1ab/nsp12879D879YGatTat8484AY.190.095781
ORF1ab/nsp12879D879NGatAat7474AY.390.001829
ORF1ab/nsp12879D879YGatTat7474AY.440.00045
ORF1ab/nsp12879D879delGAT---6666All0.000013
ORF1ab/nsp12879D879YGatTat6363AY.30.000627
ORF1ab/nsp12879D879YGatTat6060AY.1200.002231
ORF1ab/nsp12879D879GgAtgGt6060AY.430.000266
ORF1ab/nsp12879D879YGatTat5757AY.4.50.006127
ORF1ab/nsp12879D879YGatTat5555AY.1020.001458
ORF1ab/nsp12879D879YGatTat5050B.1.1.5190.001986
ORF1ab/nsp12879D879AgAtgCt4949All0.000009
ORF1ab/nsp12879D879YGatTat4949B.1.6210.004337
ORF1ab/nsp12879D879YGatTat4747AY.390.001161
ORF1ab/nsp12879D879GgAtgGt4747B.1.177.40.00992
ORF1ab/nsp12879D879YGatTat4444B.1.20.000387
ORF1ab/nsp12879D879YGatTat4343B.1.1590.52439
ORF1ab/nsp12879D879DgaTgaC4242B.1.4290.000988
ORF1ab/nsp12879D879DgaTgaC3636B.1.1.70.000032
ORF1ab/nsp12879D879DgaTgaC3535B.1.2430.002435
ORF1ab/nsp12879D879delGAT---3333B.1.1.70.00003
ORF1ab/nsp12879D879YGatTat3232B.10.000293
ORF1ab/nsp12879D879GgAtgGt2828B.1.617.20.000105
ORF1ab/nsp12879D879YGatTat2525B.1.36.80.025
ORF1ab/nsp12879D879YGatTat2424AY.1080.026461
ORF1ab/nsp12879D879GgAtgGt2424AY.1190.000847
ORF1ab/nsp12879D879YGatTat2424AY.420.000966
ORF1ab/nsp12879D879YGatTat2424B.1.10.000435
ORF1ab/nsp12879D879GgAtgGt2323B.1.1.5190.000913
ORF1ab/nsp12879D879YGatTat2222AY.1170.001859
ORF1ab/nsp12879D879YGatTat2222AY.200.000855
ORF1ab/nsp12879D879VgAtgTt2121All0.000004
ORF1ab/nsp12879D879GgAtgGt2020B.1.1.2140.001109
ORF1ab/nsp12879D879YGatTat2020B.1.177.350.013822
ORF1ab/nsp12879D879YGatTat1919AY.260.000538
ORF1ab/nsp12879D879YGatTat1919AY.360.002816
ORF1ab/nsp12879D879YGatTat1919AY.46.50.00377
ORF1ab/nsp12879D879YGatTat1818AY.330.001202
ORF1ab/nsp12879D879YGatTat1818AY.4.2.10.002682
ORF1ab/nsp12879D879NGatAat1818AY.420.000724
ORF1ab/nsp12879D879YGatTat1818AY.50.000372
ORF1ab/nsp12879D879YGatTat1818B.1.177.420.0161
ORF1ab/nsp12879D879YGatTat1818B.1.2580.001198
ORF1ab/nsp12879D879GgAtgGt1717B.1.1770.000224
ORF1ab/nsp12879D879VgAtgTt1717B.1.4360.01749
ORF1ab/nsp12879D879YGatTat1515AY.39.10.000594
ORF1ab/nsp12879D879GgAtgGt1515B.10.000137
ORF1ab/nsp12879D879YGatTat1515B.1.2210.001065
ORF1ab/nsp12879D879NGatAat1414B.1.1.70.000013
ORF1ab/nsp12879D879YGatTat1313AY.120.10.004173
ORF1ab/nsp12879D879YGatTat1313AY.140.001144
ORF1ab/nsp12879D879NGatAat1111AY.920.00316
ORF1ab/nsp12879D879AgAtgCt1111B.1.1.70.00001
ORF1ab/nsp12879D879GgAtgGt1111P.10.000173
ORF1ab/nsp12879D879GgAtgGt1010AT.10.051282
ORF1ab/nsp12879D879YGatTat1010B.1.5260.000235
ORF1ab/nsp12879D879HGatCat99All0.000002
ORF1ab/nsp12879D879YGatTat99AY.290.000142
ORF1ab/nsp12879D879NGatAat99AY.440.000055
ORF1ab/nsp12879D879YGatTat99AY.980.000711
ORF1ab/nsp12879D879YGatTat99B.1.160.140.019068
ORF1ab/nsp12879D879YGatTat99P.10.000142
ORF1ab/nsp12879D879DgaTgaC88AY.1180.000501
ORF1ab/nsp12879D879YGatTat88AY.1180.000501
ORF1ab/nsp12879D879DgaTgaC88AY.30.00008
ORF1ab/nsp12879D879NGatAat88AY.470.000249
ORF1ab/nsp12879D879DgaTgaC88B.10.000073
ORF1ab/nsp12879D879YGatTat77AY.470.000218
ORF1ab/nsp12879D879GgAtgGt77B.1.10.000127
ORF1ab/nsp12879D879GgAtgGt77B.1.20.000062
ORF1ab/nsp12879D879YGatTat77B.1.36.290.003621
ORF1ab/nsp12879D879YGatTat77B.1.4290.000165
ORF1ab/nsp12879D879YGatTat77B.1.4360.007202
ORF1ab/nsp12879D879DgaTgaC77B.1.617.20.000026
ORF1ab/nsp12879D879del1gaTga-56All0.000001
ORF1ab/nsp12879D879del1Gat-at16All0
ORF1ab/nsp12879D879AgAtgCt66AY.40.000009
ORF1ab/nsp12879D879GgAtgGt66AY.440.000037
ORF1ab/nsp12879D879YGatTat66AY.460.000624
ORF1ab/nsp12879D879NGatAat66AY.640.003571
ORF1ab/nsp12879D879DgaTgaC66AY.680.001642
ORF1ab/nsp12879D879YGatTat66B.1.1600.000187
ORF1ab/nsp12879D879YGatTat66B.1.2400.001293
ORF1ab/nsp12879D879NGatAat66B.1.6250.014118
ORF1ab/nsp12879D879DgaTgaC66C.370.000696
ORF1ab/nsp12879D879YGatTat66C.370.000696
ORF1ab/nsp12879D879YGatTat55A.210.01385
ORF1ab/nsp12879D879EgaTgaA45All0.000001
ORF1ab/nsp12879D879EgaTgaG15All0
ORF1ab/nsp12879D879YGatTat55AY.1000.00023
ORF1ab/nsp12879D879DgaTgaC55AY.240.002155
ORF1ab/nsp12879D879GgAtgGt55AY.250.00003
ORF1ab/nsp12879D879GgAtgGt55AY.290.000079
ORF1ab/nsp12879D879DgaTgaC55AY.3.10.000426
ORF1ab/nsp12879D879YGatTat55AY.4.40.002046
ORF1ab/nsp12879D879YGatTat55AY.450.000608
ORF1ab/nsp12879D879YGatTat55AY.46.40.000823
ORF1ab/nsp12879D879YGatTat55AY.46.60.000361
ORF1ab/nsp12879D879YGatTat55AY.510.004545
ORF1ab/nsp12879D879YGatTat55AY.9.20.000184
ORF1ab/nsp12879D879YGatTat55B.1.1.2980.00431
ORF1ab/nsp12879D879YGatTat55B.1.6370.000365
ORF1ab/nsp12879D879GgAtgGt55C.370.00058
ORF1ab/nsp12879D879GgAtgGt44AY.1030.000025
ORF1ab/nsp12879D879YGatTat44AY.1100.000451
ORF1ab/nsp12879D879GgAtgGt44AY.200.000155
ORF1ab/nsp12879D879GgAtgGt44AY.330.000267
ORF1ab/nsp12879D879delGAT---44AY.40.000006
ORF1ab/nsp12879D879YGatTat44AY.4.20.000087
ORF1ab/nsp12879D879GgAtgGt44AY.420.000161
ORF1ab/nsp12879D879NGatAat44AY.450.000487
ORF1ab/nsp12879D879DgaTgaC44AY.9.20.000147
ORF1ab/nsp12879D879YGatTat44AY.98.10.000194
ORF1ab/nsp12879D879YGatTat44AY.99.20.000369
ORF1ab/nsp12879D879YGatTat44B.1.1.2140.000222
ORF1ab/nsp12879D879YGatTat44B.1.1.2610.034483
ORF1ab/nsp12879D879GgAtgGt44B.1.1.3050.015444
ORF1ab/nsp12879D879GgAtgGt44B.1.1.3170.001647
ORF1ab/nsp12879D879YGatTat44B.1.177.650.002661
ORF1ab/nsp12879D879DgaTgaC44B.1.3490.002859
ORF1ab/nsp12879D879YGatTat44B.1.466.20.001565
ORF1ab/nsp12879D879YGatTat44B.1.5610.001588
ORF1ab/nsp12879D879GgAtgGt44B.1.6090.001918
ORF1ab/nsp12879D879YGatTat44Q.30.00058
ORF1ab/nsp12879D879YGatTat33A.190.028302
ORF1ab/nsp12879D879YGatTat33AY.1110.000549
ORF1ab/nsp12879D879YGatTat33AY.1130.000427
ORF1ab/nsp12879D879YGatTat33AY.1160.00086
ORF1ab/nsp12879D879YGatTat33AY.230.000209
ORF1ab/nsp12879D879NGatAat33AY.250.000018
ORF1ab/nsp12879D879GgAtgGt33AY.260.000085
ORF1ab/nsp12879D879GgAtgGt33AY.30.00003
ORF1ab/nsp12879D879YGatTat33AY.39.1.10.002174
ORF1ab/nsp12879D879DgaTgaC33AY.4.20.000065
ORF1ab/nsp12879D879delGAT---33AY.4.50.000322
ORF1ab/nsp12879D879delGAT---33AY.430.000013
ORF1ab/nsp12879D879NGatAat33AY.540.000286
ORF1ab/nsp12879D879YGatTat33AY.60.000123
ORF1ab/nsp12879D879YGatTat33AY.750.000168
ORF1ab/nsp12879D879GgAtgGt33AY.9.20.00011
ORF1ab/nsp12879D879NGatAat33B.10.000027
ORF1ab/nsp12879D879YGatTat33B.1.1.2160.002671
ORF1ab/nsp12879D879YGatTat33B.1.1.280.000934
ORF1ab/nsp12879D879YGatTat33B.1.1.3480.002389
ORF1ab/nsp12879D879DgaTgaC33B.1.1260.003827
ORF1ab/nsp12879D879delGAT---33B.1.1770.00004
ORF1ab/nsp12879D879GgAtgGt33B.1.177.330.004934
ORF1ab/nsp12879D879DgaTgaC33B.1.177.350.002073
ORF1ab/nsp12879D879DgaTgaC33B.1.2210.000213
ORF1ab/nsp12879D879NGatAat33B.1.3190.009146
ORF1ab/nsp12879D879DgaTgaC33B.1.3510.000089
ORF1ab/nsp12879D879YGatTat33B.1.3690.000856
ORF1ab/nsp12879D879YGatTat33B.1.4620.021739
ORF1ab/nsp12879D879AgAtgCt33B.1.617.20.000011
ORF1ab/nsp12879D879GgAtgGt33P.1.150.000697
ORF1ab/nsp12879D879YGatTat22A0.000774
ORF1ab/nsp12879D879del2gATg--22All0
ORF1ab/nsp12879D879YGatTat22AY.1050.001286
ORF1ab/nsp12879D879AgAtgCt22AY.1200.000074
ORF1ab/nsp12879D879YGatTat22AY.130.000322
ORF1ab/nsp12879D879YGatTat22AY.160.000759
ORF1ab/nsp12879D879del1gaTga-22AY.250.000012
ORF1ab/nsp12879D879YGatTat22AY.270.000129
ORF1ab/nsp12879D879YGatTat22AY.29.10.000441
ORF1ab/nsp12879D879YGatTat22AY.3.10.000171
ORF1ab/nsp12879D879YGatTat22AY.340.000194
ORF1ab/nsp12879D879AgAtgCt22AY.4.50.000215
ORF1ab/nsp12879D879del1gaTga-22AY.430.000009
ORF1ab/nsp12879D879AgAtgCt22AY.430.000009
ORF1ab/nsp12879D879AgAtgCt22AY.440.000012
ORF1ab/nsp12879D879GgAtgGt22AY.450.000243
ORF1ab/nsp12879D879NGatAat22AY.460.000208
ORF1ab/nsp12879D879HGatCat22AY.50.000041
ORF1ab/nsp12879D879YGatTat22AY.610.00021
ORF1ab/nsp12879D879DgaTgaC22AY.670.000929
ORF1ab/nsp12879D879YGatTat22AY.700.000417
ORF1ab/nsp12879D879YGatTat22AY.710.00095
ORF1ab/nsp12879D879AgAtgCt22AY.75.10.000361
ORF1ab/nsp12879D879DgaTgaC22AY.770.002255
ORF1ab/nsp12879D879NGatAat22AY.840.000875
ORF1ab/nsp12879D879YGatTat22AY.880.001768
ORF1ab/nsp12879D879GgAtgGt22AY.9.10.000167
ORF1ab/nsp12879D879delGAT---22B.1.10.000036
ORF1ab/nsp12879D879YGatTat22B.1.1.10.000653
ORF1ab/nsp12879D879YGatTat22B.1.1.2220.000408
ORF1ab/nsp12879D879YGatTat22B.1.1.270.011299
ORF1ab/nsp12879D879YGatTat22B.1.1.2790.002242
ORF1ab/nsp12879D879VgAtgTt22B.1.1.70.000002
ORF1ab/nsp12879D879delGAT---22B.1.1.700.000682
ORF1ab/nsp12879D879GgAtgGt22B.1.1.700.000682
ORF1ab/nsp12879D879GgAtgGt22B.1.1600.000062
ORF1ab/nsp12879D879AgAtgCt22B.1.1770.000026
ORF1ab/nsp12879D879delGAT---22B.1.177.540.001213
ORF1ab/nsp12879D879YGatTat22B.1.177.570.000562
ORF1ab/nsp12879D879YGatTat22B.1.177.750.002081
ORF1ab/nsp12879D879DgaTgaC22B.1.177.750.002081
ORF1ab/nsp12879D879YGatTat22B.1.1790.007519
ORF1ab/nsp12879D879DgaTgaC22B.1.20.000018
ORF1ab/nsp12879D879GgAtgGt22B.1.258.170.000208
ORF1ab/nsp12879D879AgAtgCt22B.1.3510.000059
ORF1ab/nsp12879D879YGatTat22B.1.360.000292
ORF1ab/nsp12879D879YGatTat22B.1.36.180.00084
ORF1ab/nsp12879D879NGatAat22B.1.3810.015625
ORF1ab/nsp12879D879YGatTat22B.1.3960.001411
ORF1ab/nsp12879D879YGatTat22B.1.4090.001563
ORF1ab/nsp12879D879YGatTat22B.1.5650.001621
ORF1ab/nsp12879D879YGatTat22B.1.617.10.000258
ORF1ab/nsp12879D879delGAT---22B.1.617.20.000008
ORF1ab/nsp12879D879GgAtgGt22B.1.6380.105263
ORF1ab/nsp12879D879AgAtgCt22C.360.001821
ORF1ab/nsp12879D879HGatCat22D.20.00015
ORF1ab/nsp12879D879YGatTat22L.30.007092
ORF1ab/nsp12879D879DgaTgaC22P.10.000032
ORF1ab/nsp12879D879YGatTat22P.50.027397
ORF1ab/nsp12879D879YGatTat22Q.10.000253
ORF1ab/nsp12879D879YGatTat11A.2.5.10.004808
ORF1ab/nsp12879D879CGAtTGt11All0
ORF1ab/nsp12879D879TGAtACt11All0
ORF1ab/nsp12879D879DgaTgaC11AY.1010.00049
ORF1ab/nsp12879D879DgaTgaC11AY.1020.000027
ORF1ab/nsp12879D879GgAtgGt11AY.1020.000027
ORF1ab/nsp12879D879NGatAat11AY.1030.000006
ORF1ab/nsp12879D879AgAtgCt11AY.1030.000006
ORF1ab/nsp12879D879YGatTat11AY.1060.000335
ORF1ab/nsp12879D879YGatTat11AY.110.001339
ORF1ab/nsp12879D879NGatAat11AY.1100.000113
ORF1ab/nsp12879D879delGAT---11AY.1110.000183
ORF1ab/nsp12879D879DgaTgaC11AY.1170.000085
ORF1ab/nsp12879D879NGatAat11AY.1180.000063
ORF1ab/nsp12879D879GgAtgGt11AY.1180.000063
ORF1ab/nsp12879D879DgaTgaC11AY.1190.000035
ORF1ab/nsp12879D879YGatTat11AY.120.000316
ORF1ab/nsp12879D879DgaTgaC11AY.1200.000037
ORF1ab/nsp12879D879NGatAat11AY.1200.000037
ORF1ab/nsp12879D879YGatTat11AY.1210.000135
ORF1ab/nsp12879D879GgAtgGt11AY.140.000088
ORF1ab/nsp12879D879NGatAat11AY.140.000088
ORF1ab/nsp12879D879YGatTat11AY.150.002222
ORF1ab/nsp12879D879YGatTat11AY.16.10.00047
ORF1ab/nsp12879D879AgAtgCt11AY.200.000039
ORF1ab/nsp12879D879NGatAat11AY.230.00007
ORF1ab/nsp12879D879YGatTat11AY.240.000431
ORF1ab/nsp12879D879delGAT---11AY.250.000006
ORF1ab/nsp12879D879del2gATg--11AY.250.000006
ORF1ab/nsp12879D879EgaTgaA11AY.250.000006
ORF1ab/nsp12879D879DgaTgaC11AY.250.000006
ORF1ab/nsp12879D879AgAtgCt11AY.260.000028
ORF1ab/nsp12879D879YGatTat11AY.280.00189
ORF1ab/nsp12879D879del1gaTga-11AY.290.000016
ORF1ab/nsp12879D879HGatCat11AY.30.00001
ORF1ab/nsp12879D879NGatAat11AY.30.00001
ORF1ab/nsp12879D879YGatTat11AY.300.000396
ORF1ab/nsp12879D879GgAtgGt11AY.320.000532
ORF1ab/nsp12879D879YGatTat11AY.34.10.00051
ORF1ab/nsp12879D879YGatTat11AY.350.000233
ORF1ab/nsp12879D879YGatTat11AY.370.000316
ORF1ab/nsp12879D879GgAtgGt11AY.390.000025
ORF1ab/nsp12879D879CGAtTGt11AY.390.000025
ORF1ab/nsp12879D879GgAtgGt11AY.39.10.00004
ORF1ab/nsp12879D879YGatTat11AY.4.10.000737
ORF1ab/nsp12879D879NGatAat11AY.4.20.000022
ORF1ab/nsp12879D879NGatAat11AY.4.2.10.000149
ORF1ab/nsp12879D879YGatTat11AY.4.30.000842
ORF1ab/nsp12879D879DgaTgaC11AY.4.50.000107
ORF1ab/nsp12879D879YGatTat11AY.410.000294
ORF1ab/nsp12879D879NGatAat11AY.410.000294
ORF1ab/nsp12879D879AgAtgCt11AY.420.00004
ORF1ab/nsp12879D879DgaTgaC11AY.430.000004
ORF1ab/nsp12879D879HGatCat11AY.430.000004
ORF1ab/nsp12879D879EgaTgaA11AY.430.000004
ORF1ab/nsp12879D879DgaTgaC11AY.440.000006
ORF1ab/nsp12879D879GgAtgGt11AY.460.000104
ORF1ab/nsp12879D879YGatTat11AY.46.20.000635
ORF1ab/nsp12879D879AgAtgCt11AY.46.50.000198
ORF1ab/nsp12879D879NGatAat11AY.46.60.000072
ORF1ab/nsp12879D879GgAtgGt11AY.470.000031
ORF1ab/nsp12879D879DgaTgaC11AY.470.000031
ORF1ab/nsp12879D879DgaTgaC11AY.50.000021
ORF1ab/nsp12879D879NGatAat11AY.50.000021
ORF1ab/nsp12879D879AgAtgCt11AY.50.000021
ORF1ab/nsp12879D879EgaTgaA11AY.5.30.000337
ORF1ab/nsp12879D879NGatAat11AY.520.000814
ORF1ab/nsp12879D879YGatTat11AY.520.000814
ORF1ab/nsp12879D879DgaTgaC11AY.530.000288
ORF1ab/nsp12879D879YGatTat11AY.530.000288
ORF1ab/nsp12879D879DgaTgaC11AY.540.000095
ORF1ab/nsp12879D879YGatTat11AY.540.000095
ORF1ab/nsp12879D879YGatTat11AY.580.000907
ORF1ab/nsp12879D879NGatAat11AY.610.000105
ORF1ab/nsp12879D879GgAtgGt11AY.610.000105
ORF1ab/nsp12879D879YGatTat11AY.620.000436
ORF1ab/nsp12879D879YGatTat11AY.640.000595
ORF1ab/nsp12879D879YGatTat11AY.660.00107
ORF1ab/nsp12879D879YGatTat11AY.690.000187
ORF1ab/nsp12879D879NGatAat11AY.70.000196
ORF1ab/nsp12879D879NGatAat11AY.710.000475
ORF1ab/nsp12879D879YGatTat11AY.740.000116
ORF1ab/nsp12879D879NGatAat11AY.75.10.00018
ORF1ab/nsp12879D879YGatTat11AY.75.10.00018
ORF1ab/nsp12879D879YGatTat11AY.790.001211
ORF1ab/nsp12879D879GgAtgGt11AY.80.000606
ORF1ab/nsp12879D879YGatTat11AY.810.001992
ORF1ab/nsp12879D879YGatTat11AY.840.000437
ORF1ab/nsp12879D879YGatTat11AY.850.000427
ORF1ab/nsp12879D879YGatTat11AY.860.00083
ORF1ab/nsp12879D879NGatAat11AY.880.000884
ORF1ab/nsp12879D879delGAT---11AY.90.000068
ORF1ab/nsp12879D879GgAtgGt11AY.90.000068
ORF1ab/nsp12879D879YGatTat11AY.90.000068
ORF1ab/nsp12879D879YGatTat11AY.9.10.000084
ORF1ab/nsp12879D879DgaTgaC11AY.910.00073
ORF1ab/nsp12879D879YGatTat11AY.930.000273
ORF1ab/nsp12879D879YGatTat11AY.970.001701
ORF1ab/nsp12879D879YGatTat11AY.990.001049
ORF1ab/nsp12879D879delGAT---11AY.990.001049
ORF1ab/nsp12879D879YGatTat11AZ.30.00152
ORF1ab/nsp12879D879GgAtgGt11AZ.30.00152
ORF1ab/nsp12879D879YGatTat11B0.000128
ORF1ab/nsp12879D879VgAtgTt11B.10.000009
ORF1ab/nsp12879D879AgAtgCt11B.10.000009
ORF1ab/nsp12879D879delGAT---11B.10.000009
ORF1ab/nsp12879D879NGatAat11B.1.10.000018
ORF1ab/nsp12879D879EgaTgaA11B.1.10.000018
ORF1ab/nsp12879D879DgaTgaC11B.1.1.1210.002427
ORF1ab/nsp12879D879GgAtgGt11B.1.1.1610.003534
ORF1ab/nsp12879D879YGatTat11B.1.1.1890.001513
ORF1ab/nsp12879D879YGatTat11B.1.1.1960.005714
ORF1ab/nsp12879D879YGatTat11B.1.1.2190.005
ORF1ab/nsp12879D879YGatTat11B.1.1.2200.001859
ORF1ab/nsp12879D879delGAT---11B.1.1.2320.001815
ORF1ab/nsp12879D879GgAtgGt11B.1.1.2630.001558
ORF1ab/nsp12879D879delGAT---11B.1.1.3110.000358
ORF1ab/nsp12879D879YGatTat11B.1.1.3260.001761
ORF1ab/nsp12879D879YGatTat11B.1.1.330.000421
ORF1ab/nsp12879D879DgaTgaC11B.1.1.3480.000796
ORF1ab/nsp12879D879AgAtgCt11B.1.1.3690.000446
ORF1ab/nsp12879D879YGatTat11B.1.1.4090.002833
ORF1ab/nsp12879D879AgAtgCt11B.1.1.5190.00004
ORF1ab/nsp12879D879YGatTat11B.1.1.5230.001563
ORF1ab/nsp12879D879YGatTat11B.1.1.580.005376
ORF1ab/nsp12879D879HGatCat11B.1.1.70.000001
ORF1ab/nsp12879D879YGatTat11B.1.1030.019231
ORF1ab/nsp12879D879NGatAat11B.1.110.30.000718
ORF1ab/nsp12879D879YGatTat11B.1.1110.001175
ORF1ab/nsp12879D879GgAtgGt11B.1.1460.004237
ORF1ab/nsp12879D879GgAtgGt11B.1.160.140.002119
ORF1ab/nsp12879D879YGatTat11B.1.160.260.002421
ORF1ab/nsp12879D879YGatTat11B.1.177.120.000152
ORF1ab/nsp12879D879delGAT---11B.1.177.150.000631
ORF1ab/nsp12879D879YGatTat11B.1.177.320.00135
ORF1ab/nsp12879D879YGatTat11B.1.177.450.000381
ORF1ab/nsp12879D879YGatTat11B.1.177.560.000668
ORF1ab/nsp12879D879YGatTat11B.1.177.730.000566
ORF1ab/nsp12879D879YGatTat11B.1.177.80.000752
ORF1ab/nsp12879D879YGatTat11B.1.177.860.000183
ORF1ab/nsp12879D879NGatAat11B.1.20.000009
ORF1ab/nsp12879D879YGatTat11B.1.220.001318
ORF1ab/nsp12879D879NGatAat11B.1.2400.000216
ORF1ab/nsp12879D879VgAtgTt11B.1.2430.00007
ORF1ab/nsp12879D879delGAT---11B.1.258.100.011364
ORF1ab/nsp12879D879DgaTgaC11B.1.2600.003344
ORF1ab/nsp12879D879GgAtgGt11B.1.2650.001271
ORF1ab/nsp12879D879NGatAat11B.1.2980.002114
ORF1ab/nsp12879D879GgAtgGt11B.1.3510.00003
ORF1ab/nsp12879D879YGatTat11B.1.351.50.0006
ORF1ab/nsp12879D879YGatTat11B.1.36.10.00114
ORF1ab/nsp12879D879GgAtgGt11B.1.36.290.000517
ORF1ab/nsp12879D879YGatTat11B.1.3800.006623
ORF1ab/nsp12879D879DgaTgaC11B.1.3900.010638
ORF1ab/nsp12879D879AgAtgCt11B.1.4000.000429
ORF1ab/nsp12879D879YGatTat11B.1.4000.000429
ORF1ab/nsp12879D879HGatCat11B.1.4220.000812
ORF1ab/nsp12879D879GgAtgGt11B.1.4270.00005
ORF1ab/nsp12879D879GgAtgGt11B.1.4290.000024
ORF1ab/nsp12879D879GgAtgGt11B.1.4700.001404
ORF1ab/nsp12879D879YGatTat11B.1.5250.000113
ORF1ab/nsp12879D879DgaTgaC11B.1.5250.000113
ORF1ab/nsp12879D879GgAtgGt11B.1.5260.000024
ORF1ab/nsp12879D879NGatAat11B.1.5260.000024
ORF1ab/nsp12879D879YGatTat11B.1.5380.008065
ORF1ab/nsp12879D879YGatTat11B.1.5630.016949
ORF1ab/nsp12879D879GgAtgGt11B.1.5770.000687
ORF1ab/nsp12879D879YGatTat11B.1.5960.000087
ORF1ab/nsp12879D879YGatTat11B.1.6090.000479
ORF1ab/nsp12879D879TGAtACt11B.1.617.20.000004
ORF1ab/nsp12879D879NGatAat11B.1.6200.000946
ORF1ab/nsp12879D879EgaTgaG11B.1.6210.000089
ORF1ab/nsp12879D879AgAtgCt11B.1.6210.000089
ORF1ab/nsp12879D879GgAtgGt11B.1.6210.000089
ORF1ab/nsp12879D879DgaTgaC11B.1.6230.000536
ORF1ab/nsp12879D879YGatTat11B.1.6270.00202
ORF1ab/nsp12879D879GgAtgGt11B.1.6280.000352
ORF1ab/nsp12879D879delGAT---11B.1.6300.005236
ORF1ab/nsp12879D879YGatTat11B.1.6340.003425
ORF1ab/nsp12879D879YGatTat11B.1.80.001972
ORF1ab/nsp12879D879AgAtgCt11B.1.810.021277
ORF1ab/nsp12879D879YGatTat11B.280.003279
ORF1ab/nsp12879D879YGatTat11B.30.000831
ORF1ab/nsp12879D879del1Gat-at11B.310.003731
ORF1ab/nsp12879D879delGAT---11B.340.013699
ORF1ab/nsp12879D879YGatTat11B.60.00091
ORF1ab/nsp12879D879GgAtgGt11B.60.00091
ORF1ab/nsp12879D879NGatAat11B.6.60.000889
ORF1ab/nsp12879D879YGatTat11B.6.80.008264
ORF1ab/nsp12879D879delGAT---11C.170.055556
ORF1ab/nsp12879D879YGatTat11C.36.30.000567
ORF1ab/nsp12879D879AgAtgCt11N.30.005814
ORF1ab/nsp12879D879NGatAat11P.10.000016
ORF1ab/nsp12879D879GgAtgGt11P.1.170.000162
ORF1ab/nsp12879D879YGatTat11P.20.000187
ORF1ab/nsp12879D879del2gATg--11Q.20.000613
ORF1ab/nsp12879D879GgAtgGt11Q.20.000613
ORF1ab/nsp12879D879GgAtgGt11Q.80.000165
ORF1ab/nsp12879D879HGatCat11Q.80.000165
ORF1ab/nsp12879D879GgAtgGt11R.10.00009
ORF1ab/nsp12879D879YGatTat11V.10.022727

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.