CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 879 | D879N | D5271N | nonsyn | Gat | Aat | 13029 | 13029 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879Y | D5271Y | nonsyn | Gat | Tat | 6886 | 6886 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879G | D5271G | nonsyn | gAt | gGt | 909 | 909 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879D | D5271D | syn | gaT | gaC | 602 | 602 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879del | D5271del | del | GAT | --- | 66 | 66 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879A | D5271A | nonsyn | gAt | gCt | 49 | 49 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879V | D5271V | nonsyn | gAt | gTt | 21 | 21 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879H | D5271H | nonsyn | Gat | Cat | 9 | 9 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879del1 | D5271del1 | del | gaT | ga- | 6 | 5 | 0.833333 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879del1 | D5271del1 | del | Gat | -at | 6 | 1 | 0.166667 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879E | D5271E | nonsyn | gaT | gaA | 5 | 4 | 0.8 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879E | D5271E | nonsyn | gaT | gaG | 5 | 1 | 0.2 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879del2 | D5271del2 | del | gAT | g-- | 2 | 2 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879C | D5271C | nonsyn | GAt | TGt | 1 | 1 | 1 | 16075-16077 |
ORF1ab/nsp12 | 879 | D879T | D5271T | nonsyn | GAt | ACt | 1 | 1 | 1 | 16075-16077 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 13029 | 13029 | All | 0.002492 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 12172 | 12172 | AY.4 | 0.018945 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 6886 | 6886 | All | 0.001317 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3701 | 3701 | AY.4 | 0.00576 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 909 | 909 | All | 0.000174 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 665 | 665 | B.1.617.2 | 0.002504 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 602 | 602 | All | 0.000115 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 320 | 320 | AY.98 | 0.025278 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 281 | 281 | B.1.1.7 | 0.000252 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 237 | 237 | B.1.177 | 0.003121 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 234 | 234 | B.1.617.2 | 0.000881 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 224 | 224 | AY.4 | 0.000349 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 223 | 223 | AY.103 | 0.001385 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 185 | 185 | AY.4 | 0.000288 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 183 | 183 | B.1.1.222 | 0.037332 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 165 | 165 | B.1.1.7 | 0.000148 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 159 | 159 | C.37.1 | 0.41623 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 109 | 109 | AY.43 | 0.000483 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 108 | 108 | AY.43 | 0.000478 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 96 | 96 | B.1.351 | 0.002854 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 94 | 94 | AY.119 | 0.003319 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 89 | 89 | AY.25 | 0.000535 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 84 | 84 | AY.19 | 0.095781 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 74 | 74 | AY.39 | 0.001829 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 74 | 74 | AY.44 | 0.00045 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 66 | 66 | All | 0.000013 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 63 | 63 | AY.3 | 0.000627 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 60 | 60 | AY.120 | 0.002231 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 60 | 60 | AY.43 | 0.000266 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 57 | 57 | AY.4.5 | 0.006127 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 55 | 55 | AY.102 | 0.001458 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 50 | 50 | B.1.1.519 | 0.001986 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 49 | 49 | All | 0.000009 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 49 | 49 | B.1.621 | 0.004337 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 47 | 47 | AY.39 | 0.001161 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 47 | 47 | B.1.177.4 | 0.00992 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 44 | 44 | B.1.2 | 0.000387 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 43 | 43 | B.1.159 | 0.52439 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 42 | 42 | B.1.429 | 0.000988 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 36 | 36 | B.1.1.7 | 0.000032 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 35 | 35 | B.1.243 | 0.002435 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 33 | 33 | B.1.1.7 | 0.00003 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 32 | 32 | B.1 | 0.000293 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 25 | 25 | B.1.36.8 | 0.025 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 24 | 24 | AY.108 | 0.026461 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 24 | 24 | AY.119 | 0.000847 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 24 | 24 | AY.42 | 0.000966 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 22 | 22 | AY.117 | 0.001859 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 22 | 22 | AY.20 | 0.000855 |
ORF1ab/nsp12 | 879 | D879V | gAt | gTt | 21 | 21 | All | 0.000004 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 20 | 20 | B.1.1.214 | 0.001109 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 20 | 20 | B.1.177.35 | 0.013822 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 19 | 19 | AY.36 | 0.002816 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 19 | 19 | AY.46.5 | 0.00377 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 18 | 18 | AY.4.2.1 | 0.002682 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 18 | 18 | AY.5 | 0.000372 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 18 | 18 | B.1.177.42 | 0.0161 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 18 | 18 | B.1.258 | 0.001198 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp12 | 879 | D879V | gAt | gTt | 17 | 17 | B.1.436 | 0.01749 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 15 | 15 | AY.39.1 | 0.000594 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 13 | 13 | AY.120.1 | 0.004173 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 13 | 13 | AY.14 | 0.001144 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 11 | 11 | AY.92 | 0.00316 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 10 | 10 | AT.1 | 0.051282 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 9 | 9 | All | 0.000002 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 9 | 9 | B.1.160.14 | 0.019068 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 7 | 7 | B.1.436 | 0.007202 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp12 | 879 | D879del1 | gaT | ga- | 5 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 879 | D879del1 | Gat | -at | 1 | 6 | All | 0 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 6 | 6 | AY.64 | 0.003571 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 6 | 6 | AY.68 | 0.001642 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 6 | 6 | B.1.625 | 0.014118 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | A.21 | 0.01385 |
ORF1ab/nsp12 | 879 | D879E | gaT | gaA | 4 | 5 | All | 0.000001 |
ORF1ab/nsp12 | 879 | D879E | gaT | gaG | 1 | 5 | All | 0 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | AY.51 | 0.004545 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | B.1.1.298 | 0.00431 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | B.1.1.261 | 0.034483 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 4 | 4 | B.1.1.305 | 0.015444 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | B.1.177.65 | 0.002661 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | A.19 | 0.028302 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | AY.39.1.1 | 0.002174 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 3 | 3 | B.1.319 | 0.009146 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 879 | D879del2 | gAT | g-- | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp12 | 879 | D879del1 | gaT | ga- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 879 | D879del1 | gaT | ga- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.1.27 | 0.011299 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp12 | 879 | D879V | gAt | gTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 2 | 2 | B.1.381 | 0.015625 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 2 | 2 | B.1.638 | 0.105263 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | P.5 | 0.027397 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp12 | 879 | D879C | GAt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 879 | D879T | GAt | ACt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 879 | D879del2 | gAT | g-- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 879 | D879E | gaT | gaA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 879 | D879del1 | gaT | ga- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 879 | D879C | GAt | TGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 879 | D879E | gaT | gaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 879 | D879E | gaT | gaA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 879 | D879V | gAt | gTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 879 | D879E | gaT | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 879 | D879V | gAt | gTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.563 | 0.016949 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 879 | D879T | GAt | ACt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 879 | D879E | gaT | gaG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 879 | D879D | gaT | gaC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp12 | 879 | D879del1 | Gat | -at | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp12 | 879 | D879del | GAT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 879 | D879A | gAt | gCt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp12 | 879 | D879N | Gat | Aat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 879 | D879del2 | gAT | g-- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp12 | 879 | D879H | Gat | Cat | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp12 | 879 | D879G | gAt | gGt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp12 | 879 | D879Y | Gat | Tat | 1 | 1 | V.1 | 0.022727 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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