CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 875 | Q875Q | Q5267Q | syn | caG | caA | 495 | 495 | 1 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875R | Q5267R | nonsyn | cAg | cGg | 445 | 445 | 1 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875H | Q5267H | nonsyn | caG | caT | 394 | 393 | 0.997462 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875H | Q5267H | nonsyn | caG | caC | 394 | 1 | 0.00253807 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875K | Q5267K | nonsyn | Cag | Aag | 199 | 199 | 1 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875del | Q5267del | del | CAG | --- | 60 | 60 | 1 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875E | Q5267E | nonsyn | Cag | Gag | 56 | 51 | 0.910714 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875E | Q5267E | nonsyn | CaG | GaA | 56 | 5 | 0.0892857 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875L | Q5267L | nonsyn | cAg | cTg | 39 | 38 | 0.974359 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875L | Q5267L | nonsyn | cAG | cTT | 39 | 1 | 0.025641 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875X | Q5267X | nonsyn | Cag | Tag | 34 | 34 | 1 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875del1 | Q5267del1 | del | caG | ca- | 7 | 7 | 1 | 16063-16065 |
ORF1ab/nsp12 | 875 | Q875P | Q5267P | nonsyn | cAg | cCg | 2 | 2 | 1 | 16063-16065 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 495 | 495 | All | 0.000095 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 445 | 445 | All | 0.000085 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 393 | 394 | All | 0.000075 |
ORF1ab/nsp12 | 875 | Q875H | caG | caC | 1 | 394 | All | 0 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 246 | 246 | B.1.1.7 | 0.00022 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 199 | 199 | All | 0.000038 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 165 | 165 | AY.4 | 0.000257 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 92 | 92 | B.1.1.7 | 0.000082 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 72 | 72 | B.1.1.7 | 0.000064 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 70 | 70 | B.1.628 | 0.024665 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 60 | 60 | All | 0.000011 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 51 | 56 | All | 0.00001 |
ORF1ab/nsp12 | 875 | Q875E | CaG | GaA | 5 | 56 | All | 0.000001 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 54 | 54 | AY.43 | 0.000239 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 46 | 46 | B.1 | 0.000421 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 38 | 39 | All | 0.000007 |
ORF1ab/nsp12 | 875 | Q875L | cAG | cTT | 1 | 39 | All | 0 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 34 | 34 | All | 0.000007 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 34 | 34 | B.1.2 | 0.000299 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 27 | 27 | B.1.351 | 0.000803 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 24 | 25 | AY.4 | 0.000037 |
ORF1ab/nsp12 | 875 | Q875H | caG | caC | 1 | 25 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 23 | 23 | B.1.621 | 0.002036 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 20 | 20 | B.1.1.415 | 1 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 17 | 17 | AY.3 | 0.000169 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 16 | 16 | B.1.203 | 1 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 5 | 10 | B.1 | 0.000046 |
ORF1ab/nsp12 | 875 | Q875E | CaG | GaA | 5 | 10 | B.1 | 0.000046 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 10 | 10 | B.1.436 | 0.010288 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp12 | 875 | Q875del1 | caG | ca- | 7 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 7 | 7 | AU.2 | 0.016949 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 6 | 6 | B.1.1.466 | 0.052174 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp12 | 875 | Q875P | cAg | cCg | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp12 | 875 | Q875del1 | caG | ca- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 875 | Q875L | cAG | cTT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 2 | 2 | B.1.443 | 0.009346 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 875 | Q875del1 | caG | ca- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 875 | Q875del1 | caG | ca- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 875 | Q875del1 | caG | ca- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 875 | Q875P | cAg | cCg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 875 | Q875del1 | caG | ca- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 875 | Q875P | cAg | cCg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.360 | 0.012658 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 875 | Q875del1 | caG | ca- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp12 | 875 | Q875R | cAg | cGg | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp12 | 875 | Q875K | Cag | Aag | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp12 | 875 | Q875del | CAG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 875 | Q875E | Cag | Gag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 875 | Q875Q | caG | caA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 875 | Q875X | Cag | Tag | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 875 | Q875H | caG | caT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 875 | Q875L | cAg | cTg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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