CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 875

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12875Q875QQ5267QsyncaGcaA495495116063-16065
ORF1ab/nsp12875Q875RQ5267RnonsyncAgcGg445445116063-16065
ORF1ab/nsp12875Q875HQ5267HnonsyncaGcaT3943930.99746216063-16065
ORF1ab/nsp12875Q875HQ5267HnonsyncaGcaC39410.0025380716063-16065
ORF1ab/nsp12875Q875KQ5267KnonsynCagAag199199116063-16065
ORF1ab/nsp12875Q875delQ5267deldelCAG---6060116063-16065
ORF1ab/nsp12875Q875EQ5267EnonsynCagGag56510.91071416063-16065
ORF1ab/nsp12875Q875EQ5267EnonsynCaGGaA5650.089285716063-16065
ORF1ab/nsp12875Q875LQ5267LnonsyncAgcTg39380.97435916063-16065
ORF1ab/nsp12875Q875LQ5267LnonsyncAGcTT3910.02564116063-16065
ORF1ab/nsp12875Q875XQ5267XnonsynCagTag3434116063-16065
ORF1ab/nsp12875Q875del1Q5267del1delcaGca-77116063-16065
ORF1ab/nsp12875Q875PQ5267PnonsyncAgcCg22116063-16065

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12875Q875QcaGcaA495495All0.000095
ORF1ab/nsp12875Q875RcAgcGg445445All0.000085
ORF1ab/nsp12875Q875HcaGcaT393394All0.000075
ORF1ab/nsp12875Q875HcaGcaC1394All0
ORF1ab/nsp12875Q875RcAgcGg246246B.1.1.70.00022
ORF1ab/nsp12875Q875KCagAag199199All0.000038
ORF1ab/nsp12875Q875QcaGcaA165165AY.40.000257
ORF1ab/nsp12875Q875HcaGcaT9292B.1.1.70.000082
ORF1ab/nsp12875Q875QcaGcaA7272B.1.1.70.000064
ORF1ab/nsp12875Q875KCagAag7070B.1.6280.024665
ORF1ab/nsp12875Q875delCAG---6060All0.000011
ORF1ab/nsp12875Q875ECagGag5156All0.00001
ORF1ab/nsp12875Q875ECaGGaA556All0.000001
ORF1ab/nsp12875Q875KCagAag5454AY.430.000239
ORF1ab/nsp12875Q875QcaGcaA4646B.10.000421
ORF1ab/nsp12875Q875HcaGcaT4444B.1.1770.000579
ORF1ab/nsp12875Q875LcAgcTg3839All0.000007
ORF1ab/nsp12875Q875LcAGcTT139All0
ORF1ab/nsp12875Q875XCagTag3434All0.000007
ORF1ab/nsp12875Q875QcaGcaA3434B.1.20.000299
ORF1ab/nsp12875Q875delCAG---2828B.1.1.70.000025
ORF1ab/nsp12875Q875ECagGag2727B.1.3510.000803
ORF1ab/nsp12875Q875HcaGcaT2727B.1.617.20.000102
ORF1ab/nsp12875Q875HcaGcaT2425AY.40.000037
ORF1ab/nsp12875Q875HcaGcaC125AY.40.000002
ORF1ab/nsp12875Q875RcAgcGg2323B.1.6210.002036
ORF1ab/nsp12875Q875RcAgcGg2121AY.4.20.000455
ORF1ab/nsp12875Q875RcAgcGg2121B.1.617.20.000079
ORF1ab/nsp12875Q875KCagAag2020AY.40.000031
ORF1ab/nsp12875Q875HcaGcaT2020B.1.1.4151
ORF1ab/nsp12875Q875QcaGcaA2020P.10.000315
ORF1ab/nsp12875Q875RcAgcGg1717AY.30.000169
ORF1ab/nsp12875Q875RcAgcGg1717AY.40.000026
ORF1ab/nsp12875Q875QcaGcaA1616B.1.2031
ORF1ab/nsp12875Q875HcaGcaT1515AY.390.000371
ORF1ab/nsp12875Q875QcaGcaA1515B.1.1770.000198
ORF1ab/nsp12875Q875RcAgcGg1414AY.1030.000087
ORF1ab/nsp12875Q875KCagAag1414AY.30.000139
ORF1ab/nsp12875Q875HcaGcaT1313AY.430.000058
ORF1ab/nsp12875Q875HcaGcaT1313B.1.10.000236
ORF1ab/nsp12875Q875QcaGcaA1212B.1.617.20.000045
ORF1ab/nsp12875Q875RcAgcGg1111AY.200.000428
ORF1ab/nsp12875Q875QcaGcaA1111B.1.5260.000259
ORF1ab/nsp12875Q875RcAgcGg1010B.10.000092
ORF1ab/nsp12875Q875ECagGag510B.10.000046
ORF1ab/nsp12875Q875ECaGGaA510B.10.000046
ORF1ab/nsp12875Q875QcaGcaA1010B.1.1600.000312
ORF1ab/nsp12875Q875HcaGcaT1010B.1.4360.010288
ORF1ab/nsp12875Q875QcaGcaA99B.1.1.2840.000967
ORF1ab/nsp12875Q875HcaGcaT99B.1.20.000079
ORF1ab/nsp12875Q875QcaGcaA99Q.10.001137
ORF1ab/nsp12875Q875RcAgcGg88AY.1190.000282
ORF1ab/nsp12875Q875HcaGcaT88AY.250.000048
ORF1ab/nsp12875Q875LcAgcTg88AY.260.000226
ORF1ab/nsp12875Q875LcAgcTg88AY.390.000198
ORF1ab/nsp12875Q875XCagTag88B.1.1.70.000007
ORF1ab/nsp12875Q875del1caGca-77All0.000001
ORF1ab/nsp12875Q875QcaGcaA77AU.20.016949
ORF1ab/nsp12875Q875HcaGcaT77P.10.00011
ORF1ab/nsp12875Q875HcaGcaT66AY.1000.000276
ORF1ab/nsp12875Q875HcaGcaT66AY.1020.000159
ORF1ab/nsp12875Q875HcaGcaT66AY.1030.000037
ORF1ab/nsp12875Q875QcaGcaA66B.1.1.4660.052174
ORF1ab/nsp12875Q875HcaGcaT55AY.200.000194
ORF1ab/nsp12875Q875QcaGcaA55AY.440.00003
ORF1ab/nsp12875Q875HcaGcaT55AY.440.00003
ORF1ab/nsp12875Q875RcAgcGg55AY.440.00003
ORF1ab/nsp12875Q875ECagGag55B.1.20.000044
ORF1ab/nsp12875Q875RcAgcGg55B.1.20.000044
ORF1ab/nsp12875Q875KCagAag44AY.1190.000141
ORF1ab/nsp12875Q875RcAgcGg44AY.390.000099
ORF1ab/nsp12875Q875delCAG---44AY.40.000006
ORF1ab/nsp12875Q875HcaGcaT44AY.50.000083
ORF1ab/nsp12875Q875XCagTag44B.10.000037
ORF1ab/nsp12875Q875HcaGcaT44B.10.000037
ORF1ab/nsp12875Q875KCagAag44B.10.000037
ORF1ab/nsp12875Q875KCagAag44B.1.20.000035
ORF1ab/nsp12875Q875RcAgcGg44B.1.2430.000278
ORF1ab/nsp12875Q875RcAgcGg44B.1.360.000584
ORF1ab/nsp12875Q875QcaGcaA44B.1.4290.000094
ORF1ab/nsp12875Q875HcaGcaT44B.1.6210.000354
ORF1ab/nsp12875Q875KCagAag44P.10.000063
ORF1ab/nsp12875Q875QcaGcaA33AY.1200.000112
ORF1ab/nsp12875Q875HcaGcaT33AY.4.20.000065
ORF1ab/nsp12875Q875delCAG---33AY.4.50.000322
ORF1ab/nsp12875Q875RcAgcGg33AY.430.000013
ORF1ab/nsp12875Q875QcaGcaA33AY.430.000013
ORF1ab/nsp12875Q875delCAG---33AY.430.000013
ORF1ab/nsp12875Q875HcaGcaT33AY.460.000312
ORF1ab/nsp12875Q875QcaGcaA33AY.50.000062
ORF1ab/nsp12875Q875QcaGcaA33AY.9.20.00011
ORF1ab/nsp12875Q875HcaGcaT33B.1.1.630.001157
ORF1ab/nsp12875Q875KCagAag33B.1.1.70.000003
ORF1ab/nsp12875Q875RcAgcGg33B.1.1770.00004
ORF1ab/nsp12875Q875delCAG---33B.1.1770.00004
ORF1ab/nsp12875Q875XCagTag33B.1.20.000026
ORF1ab/nsp12875Q875HcaGcaT33B.1.2430.000209
ORF1ab/nsp12875Q875QcaGcaA33B.1.351.20.000908
ORF1ab/nsp12875Q875ECagGag33B.1.4270.000151
ORF1ab/nsp12875Q875KCagAag33B.1.617.20.000011
ORF1ab/nsp12875Q875LcAgcTg33B.1.617.20.000011
ORF1ab/nsp12875Q875HcaGcaT33C.370.000348
ORF1ab/nsp12875Q875QcaGcaA33P.1.10.000953
ORF1ab/nsp12875Q875RcAgcGg33Q.80.000495
ORF1ab/nsp12875Q875RcAgcGg22A.10.000564
ORF1ab/nsp12875Q875PcAgcCg22All0
ORF1ab/nsp12875Q875KCagAag22AY.1030.000012
ORF1ab/nsp12875Q875QcaGcaA22AY.1030.000012
ORF1ab/nsp12875Q875QcaGcaA22AY.200.000078
ORF1ab/nsp12875Q875HcaGcaT22AY.230.000139
ORF1ab/nsp12875Q875QcaGcaA22AY.260.000057
ORF1ab/nsp12875Q875HcaGcaT22AY.290.000032
ORF1ab/nsp12875Q875HcaGcaT22AY.30.00002
ORF1ab/nsp12875Q875RcAgcGg22AY.3.10.000171
ORF1ab/nsp12875Q875QcaGcaA22AY.330.000134
ORF1ab/nsp12875Q875HcaGcaT22AY.360.000296
ORF1ab/nsp12875Q875LcAgcTg22AY.39.1.10.001449
ORF1ab/nsp12875Q875QcaGcaA22AY.420.00008
ORF1ab/nsp12875Q875del1caGca-22AY.440.000012
ORF1ab/nsp12875Q875HcaGcaT22AY.470.000062
ORF1ab/nsp12875Q875QcaGcaA22AY.98.10.000097
ORF1ab/nsp12875Q875RcAgcGg22AY.99.20.000184
ORF1ab/nsp12875Q875LcAgcTg22B.10.000018
ORF1ab/nsp12875Q875KCagAag22B.1.10.000036
ORF1ab/nsp12875Q875XCagTag22B.1.10.000036
ORF1ab/nsp12875Q875LcAgcTg12B.1.10.000018
ORF1ab/nsp12875Q875LcAGcTT12B.1.10.000018
ORF1ab/nsp12875Q875HcaGcaT22B.1.1.10.000653
ORF1ab/nsp12875Q875HcaGcaT22B.1.1.390.001019
ORF1ab/nsp12875Q875ECagGag22B.1.1.70.000002
ORF1ab/nsp12875Q875delCAG---22B.1.1.700.000682
ORF1ab/nsp12875Q875HcaGcaT22B.1.1600.000062
ORF1ab/nsp12875Q875XCagTag22B.1.1770.000026
ORF1ab/nsp12875Q875delCAG---22B.1.177.540.001213
ORF1ab/nsp12875Q875HcaGcaT22B.1.3510.000059
ORF1ab/nsp12875Q875HcaGcaT22B.1.4290.000047
ORF1ab/nsp12875Q875QcaGcaA22B.1.4430.009346
ORF1ab/nsp12875Q875HcaGcaT22B.1.5750.000607
ORF1ab/nsp12875Q875ECagGag22B.1.617.20.000008
ORF1ab/nsp12875Q875delCAG---22B.1.617.20.000008
ORF1ab/nsp12875Q875RcAgcGg22P.10.000032
ORF1ab/nsp12875Q875KCagAag22P.20.000373
ORF1ab/nsp12875Q875HcaGcaT22Q.80.00033
ORF1ab/nsp12875Q875KCagAag11A0.000387
ORF1ab/nsp12875Q875HcaGcaT11AW.10.003049
ORF1ab/nsp12875Q875ECagGag11AY.100.00053
ORF1ab/nsp12875Q875QcaGcaA11AY.1000.000046
ORF1ab/nsp12875Q875LcAgcTg11AY.1000.000046
ORF1ab/nsp12875Q875RcAgcGg11AY.1020.000027
ORF1ab/nsp12875Q875QcaGcaA11AY.1020.000027
ORF1ab/nsp12875Q875KCagAag11AY.1020.000027
ORF1ab/nsp12875Q875del1caGca-11AY.1030.000006
ORF1ab/nsp12875Q875XCagTag11AY.1030.000006
ORF1ab/nsp12875Q875LcAgcTg11AY.1080.001103
ORF1ab/nsp12875Q875delCAG---11AY.1110.000183
ORF1ab/nsp12875Q875HcaGcaT11AY.1200.000037
ORF1ab/nsp12875Q875LcAgcTg11AY.1210.000135
ORF1ab/nsp12875Q875QcaGcaA11AY.130.000161
ORF1ab/nsp12875Q875RcAgcGg11AY.20.000356
ORF1ab/nsp12875Q875QcaGcaA11AY.230.00007
ORF1ab/nsp12875Q875KCagAag11AY.230.00007
ORF1ab/nsp12875Q875XCagTag11AY.250.000006
ORF1ab/nsp12875Q875delCAG---11AY.250.000006
ORF1ab/nsp12875Q875LcAgcTg11AY.250.000006
ORF1ab/nsp12875Q875HcaGcaT11AY.260.000028
ORF1ab/nsp12875Q875QcaGcaA11AY.290.000016
ORF1ab/nsp12875Q875QcaGcaA11AY.30.00001
ORF1ab/nsp12875Q875LcAgcTg11AY.30.00001
ORF1ab/nsp12875Q875HcaGcaT11AY.320.000532
ORF1ab/nsp12875Q875RcAgcGg11AY.330.000067
ORF1ab/nsp12875Q875QcaGcaA11AY.390.000025
ORF1ab/nsp12875Q875KCagAag11AY.390.000025
ORF1ab/nsp12875Q875ECagGag11AY.40.000002
ORF1ab/nsp12875Q875XCagTag11AY.40.000002
ORF1ab/nsp12875Q875LcAgcTg11AY.40.000002
ORF1ab/nsp12875Q875LcAgcTg11AY.4.20.000022
ORF1ab/nsp12875Q875XCagTag11AY.440.000006
ORF1ab/nsp12875Q875HcaGcaT11AY.450.000122
ORF1ab/nsp12875Q875KCagAag11AY.450.000122
ORF1ab/nsp12875Q875RcAgcGg11AY.46.40.000165
ORF1ab/nsp12875Q875QcaGcaA11AY.46.50.000198
ORF1ab/nsp12875Q875HcaGcaT11AY.46.60.000072
ORF1ab/nsp12875Q875KCagAag11AY.50.000021
ORF1ab/nsp12875Q875XCagTag11AY.50.000021
ORF1ab/nsp12875Q875KCagAag11AY.520.000814
ORF1ab/nsp12875Q875HcaGcaT11AY.530.000288
ORF1ab/nsp12875Q875HcaGcaT11AY.610.000105
ORF1ab/nsp12875Q875QcaGcaA11AY.680.000274
ORF1ab/nsp12875Q875del1caGca-11AY.710.000475
ORF1ab/nsp12875Q875XCagTag11AY.750.000056
ORF1ab/nsp12875Q875RcAgcGg11AY.80.000606
ORF1ab/nsp12875Q875RcAgcGg11AY.840.000437
ORF1ab/nsp12875Q875delCAG---11AY.90.000068
ORF1ab/nsp12875Q875HcaGcaT11AY.9.20.000037
ORF1ab/nsp12875Q875QcaGcaA11AY.920.000287
ORF1ab/nsp12875Q875delCAG---11AY.990.001049
ORF1ab/nsp12875Q875HcaGcaT11AZ.30.00152
ORF1ab/nsp12875Q875QcaGcaA11B0.000128
ORF1ab/nsp12875Q875KCagAag11B0.000128
ORF1ab/nsp12875Q875HcaGcaT11B0.000128
ORF1ab/nsp12875Q875del1caGca-11B0.000128
ORF1ab/nsp12875Q875PcAgcCg11B.10.000009
ORF1ab/nsp12875Q875QcaGcaA11B.1.10.000018
ORF1ab/nsp12875Q875delCAG---11B.1.10.000018
ORF1ab/nsp12875Q875HcaGcaT11B.1.1.2030.016949
ORF1ab/nsp12875Q875delCAG---11B.1.1.2320.001815
ORF1ab/nsp12875Q875RcAgcGg11B.1.1.250.000569
ORF1ab/nsp12875Q875KCagAag11B.1.1.2840.000107
ORF1ab/nsp12875Q875XCagTag11B.1.1.2850.006536
ORF1ab/nsp12875Q875HcaGcaT11B.1.1.3060.000438
ORF1ab/nsp12875Q875delCAG---11B.1.1.3110.000358
ORF1ab/nsp12875Q875RcAgcGg11B.1.1.4170.002703
ORF1ab/nsp12875Q875RcAgcGg11B.1.1.4320.001266
ORF1ab/nsp12875Q875RcAgcGg11B.1.1.50.008333
ORF1ab/nsp12875Q875ECagGag11B.1.1.5190.00004
ORF1ab/nsp12875Q875QcaGcaA11B.1.1.5190.00004
ORF1ab/nsp12875Q875LcAgcTg11B.1.1.70.000001
ORF1ab/nsp12875Q875RcAgcGg11B.1.1600.000031
ORF1ab/nsp12875Q875LcAgcTg11B.1.1600.000031
ORF1ab/nsp12875Q875HcaGcaT11B.1.160.160.000929
ORF1ab/nsp12875Q875RcAgcGg11B.1.160.230.004831
ORF1ab/nsp12875Q875LcAgcTg11B.1.1770.000013
ORF1ab/nsp12875Q875delCAG---11B.1.177.150.000631
ORF1ab/nsp12875Q875HcaGcaT11B.1.177.210.000076
ORF1ab/nsp12875Q875RcAgcGg11B.1.177.40.000211
ORF1ab/nsp12875Q875HcaGcaT11B.1.177.810.000189
ORF1ab/nsp12875Q875HcaGcaT11B.1.177.830.001481
ORF1ab/nsp12875Q875del1caGca-11B.1.20.000009
ORF1ab/nsp12875Q875QcaGcaA11B.1.2060.000816
ORF1ab/nsp12875Q875XCagTag11B.1.2210.000071
ORF1ab/nsp12875Q875delCAG---11B.1.230.006061
ORF1ab/nsp12875Q875XCagTag11B.1.2340.000132
ORF1ab/nsp12875Q875RcAgcGg11B.1.2410.000812
ORF1ab/nsp12875Q875XCagTag11B.1.2580.000067
ORF1ab/nsp12875Q875PcAgcCg11B.1.2580.000067
ORF1ab/nsp12875Q875delCAG---11B.1.258.100.011364
ORF1ab/nsp12875Q875HcaGcaT11B.1.2650.001271
ORF1ab/nsp12875Q875KCagAag11B.1.3010.005917
ORF1ab/nsp12875Q875HcaGcaT11B.1.3200.001245
ORF1ab/nsp12875Q875XCagTag11B.1.3510.00003
ORF1ab/nsp12875Q875KCagAag11B.1.3510.00003
ORF1ab/nsp12875Q875QcaGcaA11B.1.3510.00003
ORF1ab/nsp12875Q875QcaGcaA11B.1.3560.001727
ORF1ab/nsp12875Q875HcaGcaT11B.1.360.000146
ORF1ab/nsp12875Q875HcaGcaT11B.1.36.80.001
ORF1ab/nsp12875Q875QcaGcaA11B.1.3600.012658
ORF1ab/nsp12875Q875RcAgcGg11B.1.3960.000706
ORF1ab/nsp12875Q875ECagGag11B.1.3960.000706
ORF1ab/nsp12875Q875HcaGcaT11B.1.3960.000706
ORF1ab/nsp12875Q875QcaGcaA11B.1.4080.00369
ORF1ab/nsp12875Q875HcaGcaT11B.1.4270.00005
ORF1ab/nsp12875Q875XCagTag11B.1.4290.000024
ORF1ab/nsp12875Q875ECagGag11B.1.438.10.000107
ORF1ab/nsp12875Q875HcaGcaT11B.1.466.20.000391
ORF1ab/nsp12875Q875HcaGcaT11B.1.5250.000113
ORF1ab/nsp12875Q875HcaGcaT11B.1.5950.000261
ORF1ab/nsp12875Q875RcAgcGg11B.1.5950.000261
ORF1ab/nsp12875Q875LcAgcTg11B.1.5960.000087
ORF1ab/nsp12875Q875XCagTag11B.1.5960.000087
ORF1ab/nsp12875Q875QcaGcaA11B.1.6090.000479
ORF1ab/nsp12875Q875del1caGca-11B.1.617.20.000004
ORF1ab/nsp12875Q875LcAgcTg11B.1.6210.000089
ORF1ab/nsp12875Q875KCagAag11B.1.6230.000536
ORF1ab/nsp12875Q875HcaGcaT11B.1.6260.005714
ORF1ab/nsp12875Q875delCAG---11B.1.6300.005236
ORF1ab/nsp12875Q875HcaGcaT11B.1.6370.000073
ORF1ab/nsp12875Q875RcAgcGg11B.1.6370.000073
ORF1ab/nsp12875Q875QcaGcaA11B.1.90.006173
ORF1ab/nsp12875Q875delCAG---11B.340.013699
ORF1ab/nsp12875Q875RcAgcGg11B.390.002331
ORF1ab/nsp12875Q875KCagAag11B.60.00091
ORF1ab/nsp12875Q875XCagTag11B.610.005747
ORF1ab/nsp12875Q875delCAG---11C.170.055556
ORF1ab/nsp12875Q875HcaGcaT11C.36.30.000567
ORF1ab/nsp12875Q875LcAgcTg11C.36.30.000567
ORF1ab/nsp12875Q875ECagGag11C.370.000116
ORF1ab/nsp12875Q875ECagGag11D.20.000075
ORF1ab/nsp12875Q875QcaGcaA11D.20.000075
ORF1ab/nsp12875Q875QcaGcaA11P.1.120.000484
ORF1ab/nsp12875Q875XCagTag11P.1.140.000048
ORF1ab/nsp12875Q875HcaGcaT11P.1.170.000162
ORF1ab/nsp12875Q875HcaGcaT11P.1.70.000319
ORF1ab/nsp12875Q875HcaGcaT11Q.10.000126
ORF1ab/nsp12875Q875LcAgcTg11R.10.00009