CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 87

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1287Y87YY4479YsyntaTtaC52735273113699-13701
ORF1ab/nsp1287Y87HY4479HnonsynTatCat1671660.99401213699-13701
ORF1ab/nsp1287Y87HY4479HnonsynTaTCaC16710.0059880213699-13701
ORF1ab/nsp1287Y87CY4479CnonsyntAttGt58560.96551713699-13701
ORF1ab/nsp1287Y87CY4479CnonsyntATtGC5820.034482813699-13701
ORF1ab/nsp1287Y87delY4479deldelTAT---2424113699-13701
ORF1ab/nsp1287Y87NY4479NnonsynTatAat99113699-13701
ORF1ab/nsp1287Y87XY4479XnonsyntaTtaG950.55555613699-13701
ORF1ab/nsp1287Y87XY4479XnonsyntaTtaA940.44444413699-13701
ORF1ab/nsp1287Y87FY4479FnonsyntAttTt44113699-13701
ORF1ab/nsp1287Y87SY4479SnonsyntAttCt430.7513699-13701
ORF1ab/nsp1287Y87SY4479SnonsyntATtCG410.2513699-13701
ORF1ab/nsp1287Y87del1Y4479del1deltaTta-310.33333313699-13701
ORF1ab/nsp1287Y87del1Y4479del1delTat-at310.33333313699-13701
ORF1ab/nsp1287Y87del1Y4479del1delTAt-Gt310.33333313699-13701
ORF1ab/nsp1287Y87del2Y4479del2delTAt--t22113699-13701
ORF1ab/nsp1287Y87VY4479VnonsynTATGTG210.513699-13701
ORF1ab/nsp1287Y87AY4479AnonsynTATGCA210.513699-13701
ORF1ab/nsp1287Y87VY4479VnonsynTATGTC210.513699-13701
ORF1ab/nsp1287Y87DY4479DnonsynTaTGaC210.513699-13701
ORF1ab/nsp1287Y87LY4479LnonsynTATCTG210.513699-13701
ORF1ab/nsp1287Y87LY4479LnonsynTATCTC210.513699-13701
ORF1ab/nsp1287Y87AY4479AnonsynTATGCG210.513699-13701
ORF1ab/nsp1287Y87TY4479TnonsynTATACG210.513699-13701
ORF1ab/nsp1287Y87TY4479TnonsynTATACA210.513699-13701
ORF1ab/nsp1287Y87DY4479DnonsynTatGat210.513699-13701
ORF1ab/nsp1287Y87EY4479EnonsynTaTGaG11113699-13701
ORF1ab/nsp1287Y87QY4479QnonsynTaTCaG11113699-13701

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1287Y87YtaTtaC52735273All0.001009
ORF1ab/nsp1287Y87YtaTtaC36163616AY.30.035966
ORF1ab/nsp1287Y87YtaTtaC804804AY.600.754221
ORF1ab/nsp1287Y87HTatCat166167All0.000032
ORF1ab/nsp1287Y87HTaTCaC1167All0
ORF1ab/nsp1287Y87YtaTtaC149149AY.40.000232
ORF1ab/nsp1287Y87HTatCat145145B.1.1.70.00013
ORF1ab/nsp1287Y87YtaTtaC143143AY.320.076145
ORF1ab/nsp1287Y87YtaTtaC107107AY.440.000651
ORF1ab/nsp1287Y87YtaTtaC8888B.1.617.20.000331
ORF1ab/nsp1287Y87CtAttGt5658All0.000011
ORF1ab/nsp1287Y87CtATtGC258All0
ORF1ab/nsp1287Y87YtaTtaC3333B.1.1.70.00003
ORF1ab/nsp1287Y87YtaTtaC2929B.1.10.000526
ORF1ab/nsp1287Y87delTAT---2424All0.000005
ORF1ab/nsp1287Y87YtaTtaC2222AY.250.000132
ORF1ab/nsp1287Y87YtaTtaC2020AY.430.000089
ORF1ab/nsp1287Y87YtaTtaC1818AY.1170.001521
ORF1ab/nsp1287Y87CtAttGt1818AY.40.000028
ORF1ab/nsp1287Y87YtaTtaC1717AY.420.000684
ORF1ab/nsp1287Y87YtaTtaC1616AY.1020.000424
ORF1ab/nsp1287Y87YtaTtaC1616AY.46.60.001155
ORF1ab/nsp1287Y87YtaTtaC1515B.1.20.000132
ORF1ab/nsp1287Y87YtaTtaC1212AY.99.20.001106
ORF1ab/nsp1287Y87YtaTtaC1111AY.920.00316
ORF1ab/nsp1287Y87NTatAat99All0.000002
ORF1ab/nsp1287Y87XtaTtaG59All0.000001
ORF1ab/nsp1287Y87XtaTtaA49All0.000001
ORF1ab/nsp1287Y87HTatCat99B.1.177.100.007902
ORF1ab/nsp1287Y87YtaTtaC77AY.470.000218
ORF1ab/nsp1287Y87YtaTtaC77P.1.140.000335
ORF1ab/nsp1287Y87delTAT---660.333333
ORF1ab/nsp1287Y87YtaTtaC66AY.1030.000037
ORF1ab/nsp1287Y87YtaTtaC66AY.390.000148
ORF1ab/nsp1287Y87YtaTtaC66AY.460.000624
ORF1ab/nsp1287Y87YtaTtaC66AY.840.002625
ORF1ab/nsp1287Y87YtaTtaC66B.1.1.3750.071429
ORF1ab/nsp1287Y87YtaTtaC66B.1.177.210.000459
ORF1ab/nsp1287Y87YtaTtaC66B.1.6280.002114
ORF1ab/nsp1287Y87YtaTtaC55AY.230.000349
ORF1ab/nsp1287Y87YtaTtaC55AY.50.000103
ORF1ab/nsp1287Y87CtAttGt55B.1.1.70.000004
ORF1ab/nsp1287Y87YtaTtaC55B.1.2430.000348
ORF1ab/nsp1287Y87FtAttTt44All0.000001
ORF1ab/nsp1287Y87StAttCt34All0.000001
ORF1ab/nsp1287Y87StATtCG14All0
ORF1ab/nsp1287Y87YtaTtaC44AY.1000.000184
ORF1ab/nsp1287Y87YtaTtaC44AY.330.000267
ORF1ab/nsp1287Y87YtaTtaC44B.10.000037
ORF1ab/nsp1287Y87CtAttGt44B.1.1.370.000771
ORF1ab/nsp1287Y87CtAttGt44B.1.2210.000284
ORF1ab/nsp1287Y87CtAttGt44B.1.4360.004115
ORF1ab/nsp1287Y87del1taTta-13All0
ORF1ab/nsp1287Y87del1Tat-at13All0
ORF1ab/nsp1287Y87del1TAt-Gt13All0
ORF1ab/nsp1287Y87YtaTtaC33AY.1190.000106
ORF1ab/nsp1287Y87YtaTtaC33AY.39.10.000119
ORF1ab/nsp1287Y87CtAttGt33B.1.3510.000089
ORF1ab/nsp1287Y87CtATtGC220.111111
ORF1ab/nsp1287Y87del2TAt--t22All0
ORF1ab/nsp1287Y87VTATGTG12All0
ORF1ab/nsp1287Y87DTatGat12All0
ORF1ab/nsp1287Y87TTATACA12All0
ORF1ab/nsp1287Y87TTATACG12All0
ORF1ab/nsp1287Y87ATATGCA12All0
ORF1ab/nsp1287Y87LTATCTC12All0
ORF1ab/nsp1287Y87LTATCTG12All0
ORF1ab/nsp1287Y87DTaTGaC12All0
ORF1ab/nsp1287Y87VTATGTC12All0
ORF1ab/nsp1287Y87ATATGCG12All0
ORF1ab/nsp1287Y87YtaTtaC22AY.10.000791
ORF1ab/nsp1287Y87YtaTtaC22AY.1050.001286
ORF1ab/nsp1287Y87YtaTtaC22AY.1200.000074
ORF1ab/nsp1287Y87YtaTtaC22AY.200.000078
ORF1ab/nsp1287Y87delTAT---22AY.250.000012
ORF1ab/nsp1287Y87YtaTtaC22AY.290.000032
ORF1ab/nsp1287Y87LTATCTG12AY.30.00001
ORF1ab/nsp1287Y87HTaTCaC12AY.30.00001
ORF1ab/nsp1287Y87LTATCTC12AY.30.00001
ORF1ab/nsp1287Y87VTATGTC12AY.30.00001
ORF1ab/nsp1287Y87HTatCat12AY.30.00001
ORF1ab/nsp1287Y87VTATGTG12AY.30.00001
ORF1ab/nsp1287Y87HTatCat22AY.40.000003
ORF1ab/nsp1287Y87YtaTtaC22AY.4.20.000043
ORF1ab/nsp1287Y87YtaTtaC22AY.550.001835
ORF1ab/nsp1287Y87YtaTtaC22AY.670.000929
ORF1ab/nsp1287Y87YtaTtaC22AY.730.001331
ORF1ab/nsp1287Y87YtaTtaC22AY.740.000231
ORF1ab/nsp1287Y87YtaTtaC22AY.75.10.000361
ORF1ab/nsp1287Y87YtaTtaC22AY.880.001768
ORF1ab/nsp1287Y87YtaTtaC22AY.930.000546
ORF1ab/nsp1287Y87YtaTtaC22AY.950.001522
ORF1ab/nsp1287Y87HTatCat22B.10.000018
ORF1ab/nsp1287Y87XtaTtaG12B.10.000009
ORF1ab/nsp1287Y87XtaTtaA12B.10.000009
ORF1ab/nsp1287Y87NTatAat22B.1.1.70.000002
ORF1ab/nsp1287Y87TTATACA12B.1.1.70.000001
ORF1ab/nsp1287Y87ATATGCG12B.1.1.70.000001
ORF1ab/nsp1287Y87TTATACG12B.1.1.70.000001
ORF1ab/nsp1287Y87ATATGCA12B.1.1.70.000001
ORF1ab/nsp1287Y87XtaTtaG22B.1.1600.000062
ORF1ab/nsp1287Y87YtaTtaC22B.1.1640.029851
ORF1ab/nsp1287Y87YtaTtaC22B.1.1770.000026
ORF1ab/nsp1287Y87CtAttGt22B.1.20.000018
ORF1ab/nsp1287Y87YtaTtaC22B.1.5960.000174
ORF1ab/nsp1287Y87FtAttTt22P.10.000032
ORF1ab/nsp1287Y87CtAttGt11A.23.10.000704
ORF1ab/nsp1287Y87ETaTGaG11All0
ORF1ab/nsp1287Y87QTaTCaG11All0
ORF1ab/nsp1287Y87HTatCat11AY.1020.000027
ORF1ab/nsp1287Y87StAttCt11AY.1030.000006
ORF1ab/nsp1287Y87YtaTtaC11AY.1060.000335
ORF1ab/nsp1287Y87delTAT---11AY.1080.001103
ORF1ab/nsp1287Y87YtaTtaC11AY.1100.000113
ORF1ab/nsp1287Y87YtaTtaC11AY.1110.000183
ORF1ab/nsp1287Y87YtaTtaC11AY.1160.000287
ORF1ab/nsp1287Y87StATtCG11AY.1190.000035
ORF1ab/nsp1287Y87delTAT---11AY.1200.000037
ORF1ab/nsp1287Y87del1Tat-at11AY.120.10.000321
ORF1ab/nsp1287Y87YtaTtaC11AY.130.000161
ORF1ab/nsp1287Y87CtAttGt11AY.230.00007
ORF1ab/nsp1287Y87YtaTtaC11AY.270.000065
ORF1ab/nsp1287Y87CtAttGt11AY.30.00001
ORF1ab/nsp1287Y87ETaTGaG11AY.30.00001
ORF1ab/nsp1287Y87DTaTGaC11AY.30.00001
ORF1ab/nsp1287Y87QTaTCaG11AY.30.00001
ORF1ab/nsp1287Y87YtaTtaC11AY.340.000097
ORF1ab/nsp1287Y87YtaTtaC11AY.350.000233
ORF1ab/nsp1287Y87YtaTtaC11AY.370.000316
ORF1ab/nsp1287Y87HTatCat11AY.390.000025
ORF1ab/nsp1287Y87del2TAt--t11AY.39.10.00004
ORF1ab/nsp1287Y87delTAT---11AY.40.000002
ORF1ab/nsp1287Y87del2TAt--t11AY.430.000004
ORF1ab/nsp1287Y87StAttCt11AY.430.000004
ORF1ab/nsp1287Y87CtAttGt11AY.430.000004
ORF1ab/nsp1287Y87HTatCat11AY.440.000006
ORF1ab/nsp1287Y87NTatAat11AY.440.000006
ORF1ab/nsp1287Y87YtaTtaC11AY.450.000122
ORF1ab/nsp1287Y87YtaTtaC11AY.46.10.001027
ORF1ab/nsp1287Y87YtaTtaC11AY.46.40.000165
ORF1ab/nsp1287Y87YtaTtaC11AY.5.30.000337
ORF1ab/nsp1287Y87YtaTtaC11AY.520.000814
ORF1ab/nsp1287Y87YtaTtaC11AY.580.000907
ORF1ab/nsp1287Y87YtaTtaC11AY.610.000105
ORF1ab/nsp1287Y87delTAT---11AY.670.000464
ORF1ab/nsp1287Y87YtaTtaC11AY.70.000196
ORF1ab/nsp1287Y87XtaTtaA11AY.7.20.000559
ORF1ab/nsp1287Y87YtaTtaC11AY.700.000209
ORF1ab/nsp1287Y87YtaTtaC11AY.750.000056
ORF1ab/nsp1287Y87CtAttGt11AY.75.10.00018
ORF1ab/nsp1287Y87YtaTtaC11AY.780.001541
ORF1ab/nsp1287Y87YtaTtaC11AY.98.10.000048
ORF1ab/nsp1287Y87delTAT---11AY.990.001049
ORF1ab/nsp1287Y87YtaTtaC11B0.000128
ORF1ab/nsp1287Y87CtAttGt11B.10.000009
ORF1ab/nsp1287Y87NTatAat11B.10.000009
ORF1ab/nsp1287Y87del1TAt-Gt11B.1.10.000018
ORF1ab/nsp1287Y87CtAttGt11B.1.10.000018
ORF1ab/nsp1287Y87delTAT---11B.1.1.10.000327
ORF1ab/nsp1287Y87delTAT---11B.1.1.1390.022727
ORF1ab/nsp1287Y87del1taTta-11B.1.1.1480.008772
ORF1ab/nsp1287Y87CtAttGt11B.1.1.2220.000204
ORF1ab/nsp1287Y87delTAT---11B.1.1.2360.006897
ORF1ab/nsp1287Y87NTatAat11B.1.1.280.000311
ORF1ab/nsp1287Y87CtAttGt11B.1.1.2840.000107
ORF1ab/nsp1287Y87DTatGat11B.1.1.3180.000302
ORF1ab/nsp1287Y87delTAT---11B.1.1.3480.000796
ORF1ab/nsp1287Y87YtaTtaC11B.1.1.370.000193
ORF1ab/nsp1287Y87YtaTtaC11B.1.1.3720.000689
ORF1ab/nsp1287Y87HTatCat11B.1.1.390.00051
ORF1ab/nsp1287Y87CtAttGt11B.1.1.4200.001006
ORF1ab/nsp1287Y87YtaTtaC11B.1.1.5190.00004
ORF1ab/nsp1287Y87CtAttGt11B.1.1.560.017857
ORF1ab/nsp1287Y87FtAttTt11B.1.1.70.000001
ORF1ab/nsp1287Y87StAttCt11B.1.1.70.000001
ORF1ab/nsp1287Y87XtaTtaA11B.1.1.70.000001
ORF1ab/nsp1287Y87XtaTtaA11B.1.1110.001175
ORF1ab/nsp1287Y87NTatAat11B.1.1390.000733
ORF1ab/nsp1287Y87delTAT---11B.1.1610.017241
ORF1ab/nsp1287Y87XtaTtaG11B.1.1770.000013
ORF1ab/nsp1287Y87delTAT---11B.1.177.570.000281
ORF1ab/nsp1287Y87HTatCat11B.1.20.000009
ORF1ab/nsp1287Y87CtAttGt11B.1.2100.002132
ORF1ab/nsp1287Y87YtaTtaC11B.1.2100.002132
ORF1ab/nsp1287Y87FtAttTt11B.1.2360.002053
ORF1ab/nsp1287Y87YtaTtaC11B.1.2360.002053
ORF1ab/nsp1287Y87YtaTtaC11B.1.2400.000216
ORF1ab/nsp1287Y87YtaTtaC11B.1.360.000146
ORF1ab/nsp1287Y87HTatCat11B.1.3690.000285
ORF1ab/nsp1287Y87delTAT---11B.1.3750.00082
ORF1ab/nsp1287Y87delTAT---11B.1.4150.014286
ORF1ab/nsp1287Y87CtAttGt11B.1.4250.002994
ORF1ab/nsp1287Y87NTatAat11B.1.4620.007246
ORF1ab/nsp1287Y87YtaTtaC11B.1.466.20.000391
ORF1ab/nsp1287Y87NTatAat11B.1.5260.000024
ORF1ab/nsp1287Y87YtaTtaC11B.1.5260.000024
ORF1ab/nsp1287Y87NTatAat11B.1.5610.000397
ORF1ab/nsp1287Y87HTatCat11B.1.5640.000426
ORF1ab/nsp1287Y87CtAttGt11B.1.617.20.000004
ORF1ab/nsp1287Y87delTAT---11B.1.617.20.000004
ORF1ab/nsp1287Y87delTAT---11B.1.6300.005236
ORF1ab/nsp1287Y87YtaTtaC11B.290.003509
ORF1ab/nsp1287Y87delTAT---11C.170.055556
ORF1ab/nsp1287Y87YtaTtaC11D.20.000075
ORF1ab/nsp1287Y87CtAttGt11D.20.000075
ORF1ab/nsp1287Y87CtAttGt11P.10.000016
ORF1ab/nsp1287Y87YtaTtaC11P.1.170.000162
ORF1ab/nsp1287Y87XtaTtaG11Q.70.001111