CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 868 & Codon = ccG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12868P868PP5260PsynccAccG35471050.029602516042-16044

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12868P868PccAccG1053547All0.00002
ORF1ab/nsp12868P868PccAccG2124AY.40.000033
ORF1ab/nsp12868P868PccAccG920B.1.1.70.000008
ORF1ab/nsp12868P868PccAccG1717AY.330.001135
ORF1ab/nsp12868P868PccAccG18B.1.1770.000013
ORF1ab/nsp12868P868PccAccG67B.1.4290.000141
ORF1ab/nsp12868P868PccAccG56AY.390.000124
ORF1ab/nsp12868P868PccAccG46B.1.617.20.000015
ORF1ab/nsp12868P868PccAccG15AY.430.000004
ORF1ab/nsp12868P868PccAccG45AY.440.000024
ORF1ab/nsp12868P868PccAccG55B.1.36.360.00301
ORF1ab/nsp12868P868PccAccG55B.1.5610.001985
ORF1ab/nsp12868P868PccAccG44AY.290.000063
ORF1ab/nsp12868P868PccAccG33AY.1020.00008
ORF1ab/nsp12868P868PccAccG23B.1.1.5190.000079
ORF1ab/nsp12868P868PccAccG22AY.1100.000225
ORF1ab/nsp12868P868PccAccG22AY.20.000712
ORF1ab/nsp12868P868PccAccG22AY.240.000862
ORF1ab/nsp12868P868PccAccG22AY.980.000158
ORF1ab/nsp12868P868PccAccG22B.1.1.3060.000877
ORF1ab/nsp12868P868PccAccG11AY.1030.000006
ORF1ab/nsp12868P868PccAccG11AY.30.00001
ORF1ab/nsp12868P868PccAccG11AY.9.10.000084
ORF1ab/nsp12868P868PccAccG11B.1.1.2940.001266
ORF1ab/nsp12868P868PccAccG11B.1.2400.000216
ORF1ab/nsp12868P868PccAccG11B.1.3510.00003
ORF1ab/nsp12868P868PccAccG11C.370.000116
ORF1ab/nsp12868P868PccAccG11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.