CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 868

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12868P868PP5260PsynccAccT354734030.95940216042-16044
ORF1ab/nsp12868P868PP5260PsynccAccG35471050.029602516042-16044
ORF1ab/nsp12868P868PP5260PsynccAccC3547390.010995216042-16044
ORF1ab/nsp12868P868delP5260deldelCCA---5252116042-16044
ORF1ab/nsp12868P868QP5260QnonsyncCacAa1717116042-16044
ORF1ab/nsp12868P868LP5260LnonsyncCacTa17160.94117616042-16044
ORF1ab/nsp12868P868LP5260LnonsyncCAcTT1710.058823516042-16044
ORF1ab/nsp12868P868SP5260SnonsynCcaTca1616116042-16044
ORF1ab/nsp12868P868TP5260TnonsynCcaAca980.88888916042-16044
ORF1ab/nsp12868P868TP5260TnonsynCcAAcG910.11111116042-16044
ORF1ab/nsp12868P868KP5260KnonsynCCaAAa44116042-16044
ORF1ab/nsp12868P868AP5260AnonsynCcaGca22116042-16044
ORF1ab/nsp12868P868del2P5260del2delcCAc--11116042-16044
ORF1ab/nsp12868P868RP5260RnonsyncCacGa11116042-16044

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12868P868PccAccT34033547All0.000651
ORF1ab/nsp12868P868PccAccG1053547All0.00002
ORF1ab/nsp12868P868PccAccC393547All0.000007
ORF1ab/nsp12868P868PccAccT27722773B.1.2210.196903
ORF1ab/nsp12868P868PccAccC12773B.1.2210.000071
ORF1ab/nsp12868P868PccAccT344344B.1.221.11
ORF1ab/nsp12868P868PccAccT238238B.1.221.40.991667
ORF1ab/nsp12868P868delCCA---5252All0.00001
ORF1ab/nsp12868P868PccAccG2124AY.40.000033
ORF1ab/nsp12868P868PccAccC224AY.40.000003
ORF1ab/nsp12868P868PccAccT124AY.40.000002
ORF1ab/nsp12868P868PccAccG920B.1.1.70.000008
ORF1ab/nsp12868P868PccAccC720B.1.1.70.000006
ORF1ab/nsp12868P868PccAccT420B.1.1.70.000004
ORF1ab/nsp12868P868delCCA---1919B.1.1.70.000017
ORF1ab/nsp12868P868PccAccT1618B.10.000147
ORF1ab/nsp12868P868PccAccC218B.10.000018
ORF1ab/nsp12868P868QcCacAa1717All0.000003
ORF1ab/nsp12868P868LcCacTa1617All0.000003
ORF1ab/nsp12868P868LcCAcTT117All0
ORF1ab/nsp12868P868PccAccG1717AY.330.001135
ORF1ab/nsp12868P868SCcaTca1616All0.000003
ORF1ab/nsp12868P868PccAccC1111B.1.177.560.007343
ORF1ab/nsp12868P868TCcaAca89All0.000002
ORF1ab/nsp12868P868TCcAAcG19All0
ORF1ab/nsp12868P868PccAccT78B.1.1770.000092
ORF1ab/nsp12868P868PccAccG18B.1.1770.000013
ORF1ab/nsp12868P868PccAccG67B.1.4290.000141
ORF1ab/nsp12868P868PccAccT17B.1.4290.000024
ORF1ab/nsp12868P868PccAccG56AY.390.000124
ORF1ab/nsp12868P868PccAccC16AY.390.000025
ORF1ab/nsp12868P868PccAccG46B.1.617.20.000015
ORF1ab/nsp12868P868PccAccC16B.1.617.20.000004
ORF1ab/nsp12868P868PccAccT16B.1.617.20.000004
ORF1ab/nsp12868P868SCcaTca55AY.40.000008
ORF1ab/nsp12868P868PccAccC45AY.430.000018
ORF1ab/nsp12868P868PccAccG15AY.430.000004
ORF1ab/nsp12868P868PccAccG45AY.440.000024
ORF1ab/nsp12868P868PccAccC15AY.440.000006
ORF1ab/nsp12868P868QcCacAa55B.10.000046
ORF1ab/nsp12868P868LcCacTa55B.10.000046
ORF1ab/nsp12868P868PccAccT55B.1.2100.010661
ORF1ab/nsp12868P868PccAccG55B.1.36.360.00301
ORF1ab/nsp12868P868PccAccG55B.1.5610.001985
ORF1ab/nsp12868P868KCCaAAa44All0.000001
ORF1ab/nsp12868P868PccAccG44AY.290.000063
ORF1ab/nsp12868P868delCCA---44B.1.1770.000053
ORF1ab/nsp12868P868PccAccG33AY.1020.00008
ORF1ab/nsp12868P868delCCA---33AY.4.50.000322
ORF1ab/nsp12868P868PccAccG23B.1.1.5190.000079
ORF1ab/nsp12868P868PccAccT13B.1.1.5190.00004
ORF1ab/nsp12868P868delCCA---33B.1.1.700.001023
ORF1ab/nsp12868P868PccAccT33B.1.20.000026
ORF1ab/nsp12868P868ACcaGca22All0
ORF1ab/nsp12868P868SCcaTca22AY.1030.000012
ORF1ab/nsp12868P868PccAccG22AY.1100.000225
ORF1ab/nsp12868P868PccAccG22AY.20.000712
ORF1ab/nsp12868P868PccAccG22AY.240.000862
ORF1ab/nsp12868P868PccAccC22AY.250.000012
ORF1ab/nsp12868P868delCCA---22AY.40.000003
ORF1ab/nsp12868P868LcCacTa22AY.40.000003
ORF1ab/nsp12868P868QcCacAa22AY.430.000009
ORF1ab/nsp12868P868delCCA---22AY.430.000009
ORF1ab/nsp12868P868PccAccG22AY.980.000158
ORF1ab/nsp12868P868PccAccG22B.1.1.3060.000877
ORF1ab/nsp12868P868delCCA---22B.1.177.540.001213
ORF1ab/nsp12868P868delCCA---22B.1.617.20.000008
ORF1ab/nsp12868P868LcCacTa22D.20.00015
ORF1ab/nsp12868P868PccAccC110.055556
ORF1ab/nsp12868P868KCCaAAa11A0.000387
ORF1ab/nsp12868P868QcCacAa11A0.000387
ORF1ab/nsp12868P868TCcaAca11A0.000387
ORF1ab/nsp12868P868del2cCAc--11All0
ORF1ab/nsp12868P868RcCacGa11All0
ORF1ab/nsp12868P868TCcAAcG11AY.1000.000046
ORF1ab/nsp12868P868PccAccG11AY.1030.000006
ORF1ab/nsp12868P868delCCA---11AY.1110.000183
ORF1ab/nsp12868P868PccAccC11AY.1130.000142
ORF1ab/nsp12868P868PccAccC11AY.1200.000037
ORF1ab/nsp12868P868LcCAcTT11AY.120.10.000321
ORF1ab/nsp12868P868LcCacTa11AY.130.000161
ORF1ab/nsp12868P868delCCA---11AY.250.000006
ORF1ab/nsp12868P868PccAccC11AY.270.000065
ORF1ab/nsp12868P868PccAccG11AY.30.00001
ORF1ab/nsp12868P868SCcaTca11AY.30.00001
ORF1ab/nsp12868P868PccAccC11AY.420.00004
ORF1ab/nsp12868P868LcCacTa11AY.430.000004
ORF1ab/nsp12868P868KCCaAAa11AY.430.000004
ORF1ab/nsp12868P868TCcaAca11AY.430.000004
ORF1ab/nsp12868P868del2cCAc--11AY.440.000006
ORF1ab/nsp12868P868PccAccC11AY.450.000122
ORF1ab/nsp12868P868QcCacAa11AY.50.000021
ORF1ab/nsp12868P868TCcaAca11AY.5.30.000337
ORF1ab/nsp12868P868QcCacAa11AY.520.000814
ORF1ab/nsp12868P868delCCA---11AY.90.000068
ORF1ab/nsp12868P868SCcaTca11AY.90.000068
ORF1ab/nsp12868P868PccAccG11AY.9.10.000084
ORF1ab/nsp12868P868TCcaAca11AY.9.10.000084
ORF1ab/nsp12868P868delCCA---11AY.990.001049
ORF1ab/nsp12868P868LcCacTa11B0.000128
ORF1ab/nsp12868P868QcCacAa11B0.000128
ORF1ab/nsp12868P868PccAccT11B0.000128
ORF1ab/nsp12868P868delCCA---11B0.000128
ORF1ab/nsp12868P868SCcaTca11B.10.000009
ORF1ab/nsp12868P868ACcaGca11B.1.10.000018
ORF1ab/nsp12868P868SCcaTca11B.1.10.000018
ORF1ab/nsp12868P868delCCA---11B.1.10.000018
ORF1ab/nsp12868P868LcCacTa11B.1.10.000018
ORF1ab/nsp12868P868PccAccT11B.1.1.2000.007463
ORF1ab/nsp12868P868delCCA---11B.1.1.2320.001815
ORF1ab/nsp12868P868PccAccG11B.1.1.2940.001266
ORF1ab/nsp12868P868delCCA---11B.1.1.3110.000358
ORF1ab/nsp12868P868SCcaTca11B.1.1.3290.003846
ORF1ab/nsp12868P868LcCacTa11B.1.1.70.000001
ORF1ab/nsp12868P868SCcaTca11B.1.1.70.000001
ORF1ab/nsp12868P868RcCacGa11B.1.1.70.000001
ORF1ab/nsp12868P868PccAccT11B.1.177.120.000152
ORF1ab/nsp12868P868ACcaGca11B.1.177.510.004566
ORF1ab/nsp12868P868delCCA---11B.1.177.690.001484
ORF1ab/nsp12868P868QcCacAa11B.1.20.000009
ORF1ab/nsp12868P868LcCacTa11B.1.20.000009
ORF1ab/nsp12868P868SCcaTca11B.1.221.30.000833
ORF1ab/nsp12868P868PccAccT11B.1.221.30.000833
ORF1ab/nsp12868P868PccAccG11B.1.2400.000216
ORF1ab/nsp12868P868TCcaAca11B.1.2430.00007
ORF1ab/nsp12868P868PccAccT11B.1.2580.000067
ORF1ab/nsp12868P868KCCaAAa11B.1.3010.005917
ORF1ab/nsp12868P868TCcaAca11B.1.3010.005917
ORF1ab/nsp12868P868QcCacAa11B.1.3010.005917
ORF1ab/nsp12868P868delCCA---11B.1.3110.000275
ORF1ab/nsp12868P868PccAccG11B.1.3510.00003
ORF1ab/nsp12868P868PccAccT11B.1.36.390.002217
ORF1ab/nsp12868P868PccAccT11B.1.36.80.001
ORF1ab/nsp12868P868SCcaTca11B.1.3800.006623
ORF1ab/nsp12868P868QcCacAa11B.1.4290.000024
ORF1ab/nsp12868P868PccAccT11B.1.4700.001404
ORF1ab/nsp12868P868QcCacAa11B.1.5260.000024
ORF1ab/nsp12868P868PccAccT11B.1.6090.000479
ORF1ab/nsp12868P868LcCacTa11B.1.617.20.000004
ORF1ab/nsp12868P868QcCacAa11B.1.617.20.000004
ORF1ab/nsp12868P868TCcaAca11B.1.617.20.000004
ORF1ab/nsp12868P868PccAccC11B.1.6210.000089
ORF1ab/nsp12868P868TCcaAca11B.1.6230.000536
ORF1ab/nsp12868P868KCCaAAa11B.1.6230.000536
ORF1ab/nsp12868P868QcCacAa11B.1.6230.000536
ORF1ab/nsp12868P868delCCA---11B.1.6300.005236
ORF1ab/nsp12868P868delCCA---11B.340.013699
ORF1ab/nsp12868P868PccAccT11B.400.000364
ORF1ab/nsp12868P868delCCA---11B.550.00295
ORF1ab/nsp12868P868delCCA---11C.170.055556
ORF1ab/nsp12868P868delCCA---11C.360.000911
ORF1ab/nsp12868P868PccAccG11C.370.000116
ORF1ab/nsp12868P868SCcaTca11D.20.000075
ORF1ab/nsp12868P868PccAccG11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.