CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 85 & Codon = aTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1285T85IT4477InonsynaCaaTa409440930.99975613693-13695

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1285T85IaCaaTa40934094All0.000783
ORF1ab/nsp1285T85IaCaaTa970970B.1.1.4200.975855
ORF1ab/nsp1285T85IaCaaTa571571B.1.1.70.000511
ORF1ab/nsp1285T85IaCaaTa252252B.1.20.002219
ORF1ab/nsp1285T85IaCaaTa195195AY.40.000304
ORF1ab/nsp1285T85IaCaaTa166166B.1.6050.988095
ORF1ab/nsp1285T85IaCaaTa162162B.1.617.20.00061
ORF1ab/nsp1285T85IaCaaTa160160AY.270.010355
ORF1ab/nsp1285T85IaCaaTa126127B.10.001154
ORF1ab/nsp1285T85IaCaaTa113113AY.30.001124
ORF1ab/nsp1285T85IaCaaTa113113B.1.10.00205
ORF1ab/nsp1285T85IaCaaTa105105P.10.001654
ORF1ab/nsp1285T85IaCaaTa102102B.1.1770.001343
ORF1ab/nsp1285T85IaCaaTa9797AY.440.00059
ORF1ab/nsp1285T85IaCaaTa7979AY.1180.004949
ORF1ab/nsp1285T85IaCaaTa6767AY.250.000403
ORF1ab/nsp1285T85IaCaaTa6262B.1.1600.001934
ORF1ab/nsp1285T85IaCaaTa6060AY.430.000266
ORF1ab/nsp1285T85IaCaaTa3535AY.1030.000217
ORF1ab/nsp1285T85IaCaaTa2929B.1.2580.00193
ORF1ab/nsp1285T85IaCaaTa2525B.1.5960.002178
ORF1ab/nsp1285T85IaCaaTa2323B.1.5030.057214
ORF1ab/nsp1285T85IaCaaTa2222B.1.1.2420.956522
ORF1ab/nsp1285T85IaCaaTa2121AY.360.003112
ORF1ab/nsp1285T85IaCaaTa1717AY.330.001135
ORF1ab/nsp1285T85IaCaaTa1414B.1.3510.000416
ORF1ab/nsp1285T85IaCaaTa1313B.1.1.5190.000516
ORF1ab/nsp1285T85IaCaaTa1212AY.1000.000552
ORF1ab/nsp1285T85IaCaaTa1212AY.290.000189
ORF1ab/nsp1285T85IaCaaTa1212B.1.5260.000282
ORF1ab/nsp1285T85IaCaaTa1212U.30.046332
ORF1ab/nsp1285T85IaCaaTa1111AY.470.000342
ORF1ab/nsp1285T85IaCaaTa1111AY.610.001153
ORF1ab/nsp1285T85IaCaaTa1111AY.99.20.001014
ORF1ab/nsp1285T85IaCaaTa1010AY.1020.000265
ORF1ab/nsp1285T85IaCaaTa1010B.1.6210.000885
ORF1ab/nsp1285T85IaCaaTa99AY.260.000255
ORF1ab/nsp1285T85IaCaaTa99AY.460.000937
ORF1ab/nsp1285T85IaCaaTa99AY.480.004186
ORF1ab/nsp1285T85IaCaaTa99AY.50.000186
ORF1ab/nsp1285T85IaCaaTa88AY.390.000198
ORF1ab/nsp1285T85IaCaaTa88AY.4.20.000174
ORF1ab/nsp1285T85IaCaaTa88B.1.1.10.002614
ORF1ab/nsp1285T85IaCaaTa88B.1.1.170.133333
ORF1ab/nsp1285T85IaCaaTa77AY.1070.003262
ORF1ab/nsp1285T85IaCaaTa77AY.200.000272
ORF1ab/nsp1285T85IaCaaTa77B0.000895
ORF1ab/nsp1285T85IaCaaTa77B.1.36.290.003621
ORF1ab/nsp1285T85IaCaaTa77B.1.6270.014141
ORF1ab/nsp1285T85IaCaaTa66AY.740.000694
ORF1ab/nsp1285T85IaCaaTa66B.1.2340.000792
ORF1ab/nsp1285T85IaCaaTa66B.1.4110.022222
ORF1ab/nsp1285T85IaCaaTa66P.1.140.000287
ORF1ab/nsp1285T85IaCaaTa66R.10.00054
ORF1ab/nsp1285T85IaCaaTa55A0.001935
ORF1ab/nsp1285T85IaCaaTa55AY.450.000608
ORF1ab/nsp1285T85IaCaaTa55B.1.1.2070.00591
ORF1ab/nsp1285T85IaCaaTa55B.1.1.330.002104
ORF1ab/nsp1285T85IaCaaTa55B.1.4290.000118
ORF1ab/nsp1285T85IaCaaTa55B.1.4700.007022
ORF1ab/nsp1285T85IaCaaTa44AY.1010.001962
ORF1ab/nsp1285T85IaCaaTa44AY.1040.007937
ORF1ab/nsp1285T85IaCaaTa44AY.3.10.000341
ORF1ab/nsp1285T85IaCaaTa44AY.98.10.000194
ORF1ab/nsp1285T85IaCaaTa44B.1.1.3360.066667
ORF1ab/nsp1285T85IaCaaTa44P.1.100.001078
ORF1ab/nsp1285T85IaCaaTa44Q.10.000505
ORF1ab/nsp1285T85IaCaaTa33A.270.004967
ORF1ab/nsp1285T85IaCaaTa33AY.1160.00086
ORF1ab/nsp1285T85IaCaaTa33AY.1170.000254
ORF1ab/nsp1285T85IaCaaTa33AY.1190.000106
ORF1ab/nsp1285T85IaCaaTa33AY.130.000483
ORF1ab/nsp1285T85IaCaaTa33AY.420.000121
ORF1ab/nsp1285T85IaCaaTa33AY.46.40.000494
ORF1ab/nsp1285T85IaCaaTa33AY.540.000286
ORF1ab/nsp1285T85IaCaaTa33AY.680.000821
ORF1ab/nsp1285T85IaCaaTa33AY.9.20.00011
ORF1ab/nsp1285T85IaCaaTa33AY.990.003148
ORF1ab/nsp1285T85IaCaaTa33B.1.1.630.001157
ORF1ab/nsp1285T85IaCaaTa33B.1.2210.000213
ORF1ab/nsp1285T85IaCaaTa33B.1.360.000438
ORF1ab/nsp1285T85IaCaaTa33B.1.36.180.001261
ORF1ab/nsp1285T85IaCaaTa33B.1.36.370.008333
ORF1ab/nsp1285T85IaCaaTa33B.1.4220.002437
ORF1ab/nsp1285T85IaCaaTa33B.1.617.10.000387
ORF1ab/nsp1285T85IaCaaTa33B.1.9.40.018405
ORF1ab/nsp1285T85IaCaaTa33P.1.120.001452
ORF1ab/nsp1285T85IaCaaTa22A.20.001324
ORF1ab/nsp1285T85IaCaaTa22AT.10.010256
ORF1ab/nsp1285T85IaCaaTa22AY.10.000791
ORF1ab/nsp1285T85IaCaaTa22AY.140.000176
ORF1ab/nsp1285T85IaCaaTa22AY.160.000759
ORF1ab/nsp1285T85IaCaaTa22AY.4.2.10.000298
ORF1ab/nsp1285T85IaCaaTa22AY.46.60.000144
ORF1ab/nsp1285T85IaCaaTa22AY.750.000112
ORF1ab/nsp1285T85IaCaaTa22AY.75.10.000361
ORF1ab/nsp1285T85IaCaaTa22AY.940.000885
ORF1ab/nsp1285T85IaCaaTa22AY.980.000158
ORF1ab/nsp1285T85IaCaaTa22AZ.30.00304
ORF1ab/nsp1285T85IaCaaTa22B.1.1.2220.000408
ORF1ab/nsp1285T85IaCaaTa22B.1.1.250.001137
ORF1ab/nsp1285T85IaCaaTa22B.1.1.2790.002242
ORF1ab/nsp1285T85IaCaaTa22B.1.1.2980.001724
ORF1ab/nsp1285T85IaCaaTa22B.1.1.3110.000716
ORF1ab/nsp1285T85IaCaaTa22B.1.1.370.000386
ORF1ab/nsp1285T85IaCaaTa22B.1.1.390.001019
ORF1ab/nsp1285T85IaCaaTa22B.1.1.830.00542
ORF1ab/nsp1285T85IaCaaTa22B.1.177.530.004785
ORF1ab/nsp1285T85IaCaaTa22B.1.5650.001621
ORF1ab/nsp1285T85IaCaaTa22B.1.6090.000959
ORF1ab/nsp1285T85IaCaaTa22B.1.6190.001742
ORF1ab/nsp1285T85IaCaaTa22B.1.6370.000146
ORF1ab/nsp1285T85IaCaaTa22C.370.000232
ORF1ab/nsp1285T85IaCaaTa22Q.80.00033
ORF1ab/nsp1285T85IaCaaTa11A.2.5.10.004808
ORF1ab/nsp1285T85IaCaaTa11A.23.10.000704
ORF1ab/nsp1285T85IaCaaTa11AY.1050.000643
ORF1ab/nsp1285T85IaCaaTa11AY.1080.001103
ORF1ab/nsp1285T85IaCaaTa11AY.1090.00074
ORF1ab/nsp1285T85IaCaaTa11AY.1130.000142
ORF1ab/nsp1285T85IaCaaTa11AY.116.10.000311
ORF1ab/nsp1285T85IaCaaTa11AY.1200.000037
ORF1ab/nsp1285T85IaCaaTa11AY.1210.000135
ORF1ab/nsp1285T85IaCaaTa11AY.16.10.00047
ORF1ab/nsp1285T85IaCaaTa11AY.230.00007
ORF1ab/nsp1285T85IaCaaTa11AY.300.000396
ORF1ab/nsp1285T85IaCaaTa11AY.39.10.00004
ORF1ab/nsp1285T85IaCaaTa11AY.4.50.000107
ORF1ab/nsp1285T85IaCaaTa11AY.520.000814
ORF1ab/nsp1285T85IaCaaTa11AY.530.000288
ORF1ab/nsp1285T85IaCaaTa11AY.550.000917
ORF1ab/nsp1285T85IaCaaTa11AY.620.000436
ORF1ab/nsp1285T85IaCaaTa11AY.790.001211
ORF1ab/nsp1285T85IaCaaTa11AY.9.10.000084
ORF1ab/nsp1285T85IaCaaTa11AY.900.000684
ORF1ab/nsp1285T85IaCaaTa11AZ.10.000867
ORF1ab/nsp1285T85IaCaaTa11B.1.1.1740.003378
ORF1ab/nsp1285T85IaCaaTa11B.1.1.2000.007463
ORF1ab/nsp1285T85IaCaaTa11B.1.1.2540.011236
ORF1ab/nsp1285T85IaCaaTa11B.1.1.2940.001266
ORF1ab/nsp1285T85IaCaaTa11B.1.1.2970.002237
ORF1ab/nsp1285T85IaCaaTa11B.1.1.3010.001179
ORF1ab/nsp1285T85IaCaaTa11B.1.1.3060.000438
ORF1ab/nsp1285T85IaCaaTa11B.1.1.3070.002532
ORF1ab/nsp1285T85IaCaaTa11B.1.1.3480.000796
ORF1ab/nsp1285T85IaCaaTa11B.1.1.3690.000446
ORF1ab/nsp1285T85IaCaaTa11B.1.1.3740.002375
ORF1ab/nsp1285T85IaCaaTa11B.1.1.3970.002252
ORF1ab/nsp1285T85IaCaaTa11B.1.1.4090.002833
ORF1ab/nsp1285T85IaCaaTa11B.1.1.4160.000905
ORF1ab/nsp1285T85IaCaaTa11B.1.1.4170.002703
ORF1ab/nsp1285T85IaCaaTa11B.1.1.560.017857
ORF1ab/nsp1285T85IaCaaTa11B.1.1.610.008772
ORF1ab/nsp1285T85IaCaaTa11B.1.1.700.000341
ORF1ab/nsp1285T85IaCaaTa11B.1.110.30.000718
ORF1ab/nsp1285T85IaCaaTa11B.1.1110.001175
ORF1ab/nsp1285T85IaCaaTa11B.1.1180.006711
ORF1ab/nsp1285T85IaCaaTa11B.1.160.280.002924
ORF1ab/nsp1285T85IaCaaTa11B.1.177.170.000821
ORF1ab/nsp1285T85IaCaaTa11B.1.177.560.000668
ORF1ab/nsp1285T85IaCaaTa11B.1.177.580.001332
ORF1ab/nsp1285T85IaCaaTa11B.1.177.630.002703
ORF1ab/nsp1285T85IaCaaTa11B.1.177.730.000566
ORF1ab/nsp1285T85IaCaaTa11B.1.177.80.000752
ORF1ab/nsp1285T85IaCaaTa11B.1.177.810.000189
ORF1ab/nsp1285T85IaCaaTa11B.1.2060.000816
ORF1ab/nsp1285T85IaCaaTa11B.1.2320.000537
ORF1ab/nsp1285T85IaCaaTa11B.1.2430.00007
ORF1ab/nsp1285T85IaCaaTa11B.1.258.110.000396
ORF1ab/nsp1285T85IaCaaTa11B.1.258.220.002667
ORF1ab/nsp1285T85IaCaaTa11B.1.2980.002114
ORF1ab/nsp1285T85IaCaaTa11B.1.351.20.000303
ORF1ab/nsp1285T85IaCaaTa11B.1.3560.001727
ORF1ab/nsp1285T85IaCaaTa11B.1.3590.022727
ORF1ab/nsp1285T85IaCaaTa11B.1.36.360.000602
ORF1ab/nsp1285T85IaCaaTa11B.1.36.380.001642
ORF1ab/nsp1285T85IaCaaTa11B.1.3610.001289
ORF1ab/nsp1285T85IaCaaTa11B.1.3690.000285
ORF1ab/nsp1285T85IaCaaTa11B.1.4080.00369
ORF1ab/nsp1285T85IaCaaTa11B.1.4090.000781
ORF1ab/nsp1285T85IaCaaTa11B.1.4270.00005
ORF1ab/nsp1285T85IaCaaTa11B.1.428.30.012821
ORF1ab/nsp1285T85IaCaaTa11B.1.4340.052632
ORF1ab/nsp1285T85IaCaaTa11B.1.4350.011364
ORF1ab/nsp1285T85IaCaaTa11B.1.466.20.000391
ORF1ab/nsp1285T85IaCaaTa11B.1.4740.001901
ORF1ab/nsp1285T85IaCaaTa11B.1.5440.006024
ORF1ab/nsp1285T85IaCaaTa11B.1.5600.00463
ORF1ab/nsp1285T85IaCaaTa11B.1.5610.000397
ORF1ab/nsp1285T85IaCaaTa11B.1.5640.000426
ORF1ab/nsp1285T85IaCaaTa11B.1.5880.00091
ORF1ab/nsp1285T85IaCaaTa11B.1.5990.00365
ORF1ab/nsp1285T85IaCaaTa11B.1.6020.006536
ORF1ab/nsp1285T85IaCaaTa11B.1.621.10.000506
ORF1ab/nsp1285T85IaCaaTa11B.1.6230.000536
ORF1ab/nsp1285T85IaCaaTa11B.6.60.000889
ORF1ab/nsp1285T85IaCaaTa11C.140.004329
ORF1ab/nsp1285T85IaCaaTa11P.1.10.000318
ORF1ab/nsp1285T85IaCaaTa11P.1.160.000374
ORF1ab/nsp1285T85IaCaaTa11P.1.170.000162
ORF1ab/nsp1285T85IaCaaTa11P.20.000187
ORF1ab/nsp1285T85IaCaaTa11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.