CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 848 | V848I | V5240I | nonsyn | Gta | Ata | 1156 | 1155 | 0.999135 | 15982-15984 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1155 | 1156 | All | 0.000221 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 481 | 481 | AY.75 | 0.026947 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 163 | 164 | B.1.1.7 | 0.000146 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 97 | 97 | AY.4 | 0.000151 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 50 | 50 | B.1.617.2 | 0.000188 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 34 | 34 | AY.4.5 | 0.003655 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 30 | 30 | AY.3 | 0.000298 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 22 | 22 | AY.25 | 0.000132 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 17 | 17 | AY.99.2 | 0.001567 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 15 | 15 | AY.47 | 0.000467 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 12 | 12 | B.1.595 | 0.003132 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 8 | 8 | P.1.4 | 0.007812 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 6 | 6 | B.1.1.163 | 0.045802 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 6 | 6 | B.1.36.1 | 0.006842 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 5 | 5 | AY.107 | 0.00233 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 4 | 4 | AY.90 | 0.002738 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 3 | 3 | B.1.474 | 0.005703 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.1.339 | 0.010526 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.532 | 0.006211 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 848 | V848I | Gta | Ata | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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