CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 844

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12844V844VV5236VsyngtAgtG456343900.96208615970-15972
ORF1ab/nsp12844V844VV5236VsyngtAgtT45631650.036160415970-15972
ORF1ab/nsp12844V844VV5236VsyngtAgtC456380.0017532315970-15972
ORF1ab/nsp12844V844LV5236LnonsynGtaTta1231190.9674815970-15972
ORF1ab/nsp12844V844LV5236LnonsynGtaCta12330.024390215970-15972
ORF1ab/nsp12844V844LV5236LnonsynGtACtG12310.0081300815970-15972
ORF1ab/nsp12844V844delV5236deldelGTA---4949115970-15972
ORF1ab/nsp12844V844IV5236InonsynGtaAta2525115970-15972
ORF1ab/nsp12844V844AV5236AnonsyngTagCa99115970-15972
ORF1ab/nsp12844V844del1V5236del1delgtAgt-420.515970-15972
ORF1ab/nsp12844V844del1V5236del1delgTag-a410.2515970-15972
ORF1ab/nsp12844V844del1V5236del1delGta-ta410.2515970-15972
ORF1ab/nsp12844V844EV5236EnonsyngTagAa11115970-15972

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12844V844VgtAgtG43904563All0.00084
ORF1ab/nsp12844V844VgtAgtT1654563All0.000032
ORF1ab/nsp12844V844VgtAgtC84563All0.000002
ORF1ab/nsp12844V844VgtAgtG28962898B.1.1.700.987722
ORF1ab/nsp12844V844VgtAgtT22898B.1.1.700.000682
ORF1ab/nsp12844V844VgtAgtG666666AP.11
ORF1ab/nsp12844V844VgtAgtG315315B.1.617.20.001186
ORF1ab/nsp12844V844VgtAgtT156167B.1.1.70.00014
ORF1ab/nsp12844V844VgtAgtG9167B.1.1.70.000008
ORF1ab/nsp12844V844VgtAgtC2167B.1.1.70.000002
ORF1ab/nsp12844V844LGtaTta119123All0.000023
ORF1ab/nsp12844V844LGtaCta3123All0.000001
ORF1ab/nsp12844V844LGtACtG1123All0
ORF1ab/nsp12844V844VgtAgtG102103AY.40.000159
ORF1ab/nsp12844V844VgtAgtC1103AY.40.000002
ORF1ab/nsp12844V844VgtAgtG8689B.10.000788
ORF1ab/nsp12844V844VgtAgtC389B.10.000027
ORF1ab/nsp12844V844delGTA---4949All0.000009
ORF1ab/nsp12844V844VgtAgtG4242B.1.1770.000553
ORF1ab/nsp12844V844VgtAgtG3437AY.430.000151
ORF1ab/nsp12844V844VgtAgtT337AY.430.000013
ORF1ab/nsp12844V844VgtAgtG3737B.1.3510.0011
ORF1ab/nsp12844V844VgtAgtG2626B.1.10.000472
ORF1ab/nsp12844V844IGtaAta2525All0.000005
ORF1ab/nsp12844V844VgtAgtG2323AY.440.00014
ORF1ab/nsp12844V844VgtAgtG1818AY.390.000445
ORF1ab/nsp12844V844VgtAgtG1717B.1.2210.001208
ORF1ab/nsp12844V844delGTA---1616B.1.1.70.000014
ORF1ab/nsp12844V844LGtaTta1313AY.260.000368
ORF1ab/nsp12844V844LGtaTta1313B.1.1770.000171
ORF1ab/nsp12844V844LGtaTta1111AY.1030.000068
ORF1ab/nsp12844V844LGtaTta1010B.1.1.70.000009
ORF1ab/nsp12844V844AgTagCa99All0.000002
ORF1ab/nsp12844V844IGtaAta99AY.40.000014
ORF1ab/nsp12844V844LGtaTta99AY.430.00004
ORF1ab/nsp12844V844VgtAgtG88AY.1030.00005
ORF1ab/nsp12844V844LGtaTta88AY.40.000012
ORF1ab/nsp12844V844VgtAgtG88B.1.160.320.034335
ORF1ab/nsp12844V844VgtAgtG88B.1.4290.000188
ORF1ab/nsp12844V844LGtaTta66AY.250.000036
ORF1ab/nsp12844V844VgtAgtG66B.1.177.440.003114
ORF1ab/nsp12844V844VgtAgtG66C.370.000696
ORF1ab/nsp12844V844VgtAgtG55AY.1190.000177
ORF1ab/nsp12844V844VgtAgtG55AY.450.000608
ORF1ab/nsp12844V844LGtaTta55B.1.5650.004052
ORF1ab/nsp12844V844VgtAgtG44AD.20.000876
ORF1ab/nsp12844V844del1gtAgt-24All0
ORF1ab/nsp12844V844del1Gta-ta14All0
ORF1ab/nsp12844V844del1gTag-a14All0
ORF1ab/nsp12844V844VgtAgtG44AY.1100.000451
ORF1ab/nsp12844V844LGtaTta44AY.30.00004
ORF1ab/nsp12844V844LGtaTta44AY.390.000099
ORF1ab/nsp12844V844delGTA---44AY.430.000018
ORF1ab/nsp12844V844LGtaTta44AY.98.10.000194
ORF1ab/nsp12844V844LGtaCta24B.10.000018
ORF1ab/nsp12844V844LGtaTta24B.10.000018
ORF1ab/nsp12844V844VgtAgtG44B.1.1600.000125
ORF1ab/nsp12844V844IGtaAta33AY.250.000018
ORF1ab/nsp12844V844AgTagCa33AY.40.000005
ORF1ab/nsp12844V844VgtAgtG33AY.550.002752
ORF1ab/nsp12844V844VgtAgtG33AY.980.000237
ORF1ab/nsp12844V844VgtAgtG33B0.000383
ORF1ab/nsp12844V844IGtaAta33B.10.000027
ORF1ab/nsp12844V844LGtaTta33B.1.10.000054
ORF1ab/nsp12844V844delGTA---33B.1.1.700.001023
ORF1ab/nsp12844V844delGTA---33B.1.1770.00004
ORF1ab/nsp12844V844LGtaTta33B.1.617.20.000011
ORF1ab/nsp12844V844IGtaAta22AY.1000.000092
ORF1ab/nsp12844V844VgtAgtG22AY.200.000078
ORF1ab/nsp12844V844VgtAgtG22AY.250.000012
ORF1ab/nsp12844V844AgTagCa22AY.250.000012
ORF1ab/nsp12844V844VgtAgtG22AY.350.000466
ORF1ab/nsp12844V844delGTA---22AY.40.000003
ORF1ab/nsp12844V844delGTA---22AY.4.50.000215
ORF1ab/nsp12844V844VgtAgtG22AY.470.000062
ORF1ab/nsp12844V844VgtAgtG22AY.860.00166
ORF1ab/nsp12844V844VgtAgtG22AY.98.10.000097
ORF1ab/nsp12844V844LGtaTta22AY.99.20.000184
ORF1ab/nsp12844V844delGTA---22B.1.10.000036
ORF1ab/nsp12844V844del1gtAgt-12B.1.1.70.000001
ORF1ab/nsp12844V844del1gTag-a12B.1.1.70.000001
ORF1ab/nsp12844V844IGtaAta22B.1.1060.0625
ORF1ab/nsp12844V844delGTA---22B.1.177.540.001213
ORF1ab/nsp12844V844VgtAgtG22B.1.177.730.001133
ORF1ab/nsp12844V844VgtAgtT12B.1.20.000009
ORF1ab/nsp12844V844VgtAgtC12B.1.20.000009
ORF1ab/nsp12844V844LGtaTta22B.1.3510.000059
ORF1ab/nsp12844V844LGtaTta22B.1.4000.000858
ORF1ab/nsp12844V844VgtAgtG22B.1.5260.000047
ORF1ab/nsp12844V844delGTA---22B.1.617.20.000008
ORF1ab/nsp12844V844VgtAgtG11A0.000387
ORF1ab/nsp12844V844EgTagAa11All0
ORF1ab/nsp12844V844VgtAgtG11AY.1020.000027
ORF1ab/nsp12844V844IGtaAta11AY.1020.000027
ORF1ab/nsp12844V844IGtaAta11AY.1030.000006
ORF1ab/nsp12844V844VgtAgtG11AY.1050.000643
ORF1ab/nsp12844V844VgtAgtT11AY.110.001339
ORF1ab/nsp12844V844delGTA---11AY.1110.000183
ORF1ab/nsp12844V844VgtAgtG11AY.1160.000287
ORF1ab/nsp12844V844VgtAgtG11AY.1180.000063
ORF1ab/nsp12844V844LGtaTta11AY.1180.000063
ORF1ab/nsp12844V844delGTA---11AY.1200.000037
ORF1ab/nsp12844V844LGtaTta11AY.1200.000037
ORF1ab/nsp12844V844LGtACtG11AY.120.10.000321
ORF1ab/nsp12844V844delGTA---11AY.250.000006
ORF1ab/nsp12844V844VgtAgtG11AY.260.000028
ORF1ab/nsp12844V844VgtAgtG11AY.290.000016
ORF1ab/nsp12844V844LGtaTta11AY.290.000016
ORF1ab/nsp12844V844VgtAgtG11AY.30.00001
ORF1ab/nsp12844V844VgtAgtG11AY.300.000396
ORF1ab/nsp12844V844IGtaAta11AY.350.000233
ORF1ab/nsp12844V844VgtAgtG11AY.39.10.00004
ORF1ab/nsp12844V844AgTagCa11AY.39.10.00004
ORF1ab/nsp12844V844IGtaAta11AY.440.000006
ORF1ab/nsp12844V844LGtaTta11AY.440.000006
ORF1ab/nsp12844V844VgtAgtG11AY.460.000104
ORF1ab/nsp12844V844VgtAgtG11AY.46.40.000165
ORF1ab/nsp12844V844del1gtAgt-11AY.480.000465
ORF1ab/nsp12844V844VgtAgtG11AY.50.000021
ORF1ab/nsp12844V844LGtaTta11AY.50.000021
ORF1ab/nsp12844V844delGTA---11AY.50.000021
ORF1ab/nsp12844V844VgtAgtG11AY.5.20.002463
ORF1ab/nsp12844V844LGtaTta11AY.5.30.000337
ORF1ab/nsp12844V844VgtAgtG11AY.5.40.000277
ORF1ab/nsp12844V844VgtAgtG11AY.540.000095
ORF1ab/nsp12844V844VgtAgtG11AY.60.000041
ORF1ab/nsp12844V844VgtAgtG11AY.820.001357
ORF1ab/nsp12844V844VgtAgtC11AY.840.000437
ORF1ab/nsp12844V844VgtAgtG11AY.850.000427
ORF1ab/nsp12844V844VgtAgtG11AY.870.000833
ORF1ab/nsp12844V844VgtAgtG11AY.9.20.000037
ORF1ab/nsp12844V844LGtaTta11AZ.10.000867
ORF1ab/nsp12844V844delGTA---11B0.000128
ORF1ab/nsp12844V844EgTagAa11B0.000128
ORF1ab/nsp12844V844AgTagCa11B.10.000009
ORF1ab/nsp12844V844LGtaCta11B.1.1.10.000327
ORF1ab/nsp12844V844LGtaTta11B.1.1.2630.001558
ORF1ab/nsp12844V844delGTA---11B.1.1.3110.000358
ORF1ab/nsp12844V844VgtAgtG11B.1.1.3720.000689
ORF1ab/nsp12844V844VgtAgtG11B.1.1.4090.002833
ORF1ab/nsp12844V844VgtAgtG11B.1.1.4330.001425
ORF1ab/nsp12844V844LGtaTta11B.1.1.5190.00004
ORF1ab/nsp12844V844VgtAgtG11B.1.1.560.017857
ORF1ab/nsp12844V844IGtaAta11B.1.1.70.000001
ORF1ab/nsp12844V844VgtAgtG11B.1.1390.000733
ORF1ab/nsp12844V844VgtAgtG11B.1.1420.002899
ORF1ab/nsp12844V844VgtAgtG11B.1.1570.002985
ORF1ab/nsp12844V844VgtAgtG11B.1.160.260.002421
ORF1ab/nsp12844V844IGtaAta11B.1.1770.000013
ORF1ab/nsp12844V844LGtaTta11B.1.177.190.001431
ORF1ab/nsp12844V844VgtAgtT11B.1.177.200.001517
ORF1ab/nsp12844V844delGTA---11B.1.177.210.000076
ORF1ab/nsp12844V844VgtAgtG11B.1.177.310.011494
ORF1ab/nsp12844V844delGTA---11B.1.177.40.000211
ORF1ab/nsp12844V844delGTA---11B.1.177.510.004566
ORF1ab/nsp12844V844delGTA---11B.1.177.560.000668
ORF1ab/nsp12844V844delGTA---11B.1.177.690.001484
ORF1ab/nsp12844V844delGTA---11B.1.177.830.001481
ORF1ab/nsp12844V844AgTagCa11B.1.20.000009
ORF1ab/nsp12844V844AgTagCa11B.1.230.006061
ORF1ab/nsp12844V844VgtAgtG11B.1.2360.002053
ORF1ab/nsp12844V844LGtaTta11B.1.2390.001221
ORF1ab/nsp12844V844LGtaTta11B.1.2430.00007
ORF1ab/nsp12844V844VgtAgtG11B.1.360.000146
ORF1ab/nsp12844V844del1Gta-ta11B.1.36.80.001
ORF1ab/nsp12844V844VgtAgtG11B.1.3750.00082
ORF1ab/nsp12844V844LGtaTta11B.1.4030.003268
ORF1ab/nsp12844V844LGtaTta11B.1.4280.00102
ORF1ab/nsp12844V844LGtaTta11B.1.5970.00463
ORF1ab/nsp12844V844VgtAgtG11B.1.6230.000536
ORF1ab/nsp12844V844VgtAgtG11B.1.6270.00202
ORF1ab/nsp12844V844LGtaTta11B.1.6370.000073
ORF1ab/nsp12844V844delGTA---11B.550.00295
ORF1ab/nsp12844V844VgtAgtG11C.350.000774
ORF1ab/nsp12844V844VgtAgtT11D.20.000075
ORF1ab/nsp12844V844LGtaTta11P.10.000016
ORF1ab/nsp12844V844LGtaTta11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.