CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 838 | L838I | L5230I | nonsyn | Cta | Ata | 157138 | 157138 | 1 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838L | L5230L | syn | Cta | Tta | 6526 | 6422 | 0.984064 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838L | L5230L | syn | ctA | ctG | 6526 | 67 | 0.0102666 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838L | L5230L | syn | ctA | ctT | 6526 | 35 | 0.00536316 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838L | L5230L | syn | ctA | ctC | 6526 | 2 | 0.000306466 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838M | L5230M | nonsyn | CtA | AtG | 83 | 83 | 1 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838del | L5230del | del | CTA | --- | 47 | 47 | 1 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838V | L5230V | nonsyn | Cta | Gta | 13 | 13 | 1 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838P | L5230P | nonsyn | cTa | cCa | 7 | 6 | 0.857143 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838P | L5230P | nonsyn | cTA | cCT | 7 | 1 | 0.142857 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838R | L5230R | nonsyn | cTa | cGa | 5 | 4 | 0.8 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838R | L5230R | nonsyn | CTa | AGa | 5 | 1 | 0.2 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838del2 | L5230del2 | del | CTA | T-- | 3 | 3 | 1 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838T | L5230T | nonsyn | CTa | ACa | 3 | 2 | 0.666667 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838T | L5230T | nonsyn | CTA | ACG | 3 | 1 | 0.333333 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838del1 | L5230del1 | del | ctA | ct- | 1 | 1 | 1 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838S | L5230S | nonsyn | CTa | TCa | 1 | 1 | 1 | 15952-15954 |
ORF1ab/nsp12 | 838 | L838Q | L5230Q | nonsyn | cTa | cAa | 1 | 1 | 1 | 15952-15954 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 157138 | 157138 | All | 0.030055 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 155794 | 155794 | AY.43 | 0.69024 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6422 | 6526 | All | 0.001228 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 67 | 6526 | All | 0.000013 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 35 | 6526 | All | 0.000007 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctC | 2 | 6526 | All | 0 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1005 | 1019 | B.1.1.7 | 0.0009 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 8 | 1019 | B.1.1.7 | 0.000007 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 5 | 1019 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctC | 1 | 1019 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 676 | 676 | B.1.427 | 0.034136 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 596 | 596 | AY.106 | 0.199598 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 582 | 583 | B.1.177 | 0.007664 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 1 | 583 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 429 | 431 | AY.43 | 0.001901 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 431 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 1 | 431 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 313 | 313 | AY.75 | 0.017535 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 246 | 246 | B.1.617.2 | 0.000926 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 197 | 200 | AY.25 | 0.001185 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 3 | 200 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 177 | 179 | B.1.617.2 | 0.000666 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 2 | 179 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 166 | 166 | AY.39.1 | 0.006576 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 156 | 157 | AY.53 | 0.044853 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 157 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 116 | 116 | AY.39 | 0.002867 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 112 | 112 | B.1.1.519 | 0.004448 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 106 | 106 | B.1.134 | 0.579235 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 102 | 104 | AY.3 | 0.001015 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 2 | 104 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 102 | 102 | AY.5 | 0.002106 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 100 | 100 | B.1.571 | 0.970874 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 91 | 95 | B.1 | 0.000834 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 4 | 95 | B.1 | 0.000037 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 86 | 88 | AY.120 | 0.003197 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctC | 1 | 88 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 88 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 72 | 87 | P.1 | 0.001134 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 13 | 87 | P.1 | 0.000205 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 2 | 87 | P.1 | 0.000032 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 78 | 84 | B.1.2 | 0.000687 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 5 | 84 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 84 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 838 | L838M | CtA | AtG | 83 | 83 | All | 0.000016 |
ORF1ab/nsp12 | 838 | L838M | CtA | AtG | 83 | 83 | AY.43 | 0.000368 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 83 | 83 | AY.44 | 0.000505 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 81 | 81 | AY.42 | 0.003259 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 76 | 78 | AY.44 | 0.000463 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 2 | 78 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 75 | 77 | B.1.1 | 0.001361 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 2 | 77 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 67 | 67 | AY.14 | 0.005897 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 65 | 65 | B.1.351 | 0.001932 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 60 | 60 | B.1.177.21 | 0.004588 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 57 | 57 | B.1.582 | 0.027969 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 47 | 47 | All | 0.000009 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 41 | 41 | B.1.526 | 0.000964 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 38 | 38 | B.1.258.17 | 0.003951 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 37 | 37 | B.1.221 | 0.002628 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 37 | 37 | B.1.243 | 0.002575 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 37 | 37 | B.1.36.29 | 0.019141 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 35 | 35 | AY.32 | 0.018637 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 34 | 34 | B.1.596 | 0.002963 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 31 | 31 | AY.113 | 0.004414 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 22 | 31 | AY.4 | 0.000034 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 9 | 31 | AY.4 | 0.000014 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 28 | 28 | AY.29 | 0.000442 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 24 | 24 | N.5 | 0.042403 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 23 | 23 | AY.119 | 0.000812 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 21 | 23 | AY.26 | 0.000595 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 2 | 23 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 20 | 21 | B.1.258 | 0.001331 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 21 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 19 | 19 | B.1.36 | 0.002772 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 17 | 18 | AY.102 | 0.000451 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 1 | 18 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 18 | 18 | B.1.1.50 | 0.01222 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 18 | 18 | Q.1 | 0.002274 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 17 | 17 | AY.34 | 0.001648 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 16 | 16 | AY.20 | 0.000622 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 16 | 16 | AY.98.1 | 0.000775 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 15 | 15 | AY.120 | 0.000558 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 15 | 15 | AY.120.1 | 0.004815 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 15 | 15 | AY.46.6 | 0.001083 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 14 | 14 | B.1.466.2 | 0.005477 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 14 | 14 | B.6.6 | 0.012444 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 13 | 13 | A.2.5 | 0.006487 |
ORF1ab/nsp12 | 838 | L838V | Cta | Gta | 13 | 13 | All | 0.000002 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 13 | 13 | B.1.1.404 | 0.206349 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 12 | 12 | AY.75.1 | 0.002164 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 12 | 12 | B.1.351.5 | 0.007194 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 12 | 12 | B.1.575 | 0.003641 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 11 | 11 | AY.98 | 0.000869 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 11 | 11 | B.1.177.81 | 0.002083 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 11 | 11 | B.1.577 | 0.00756 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 10 | 10 | AY.34 | 0.00097 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 10 | 10 | B.1.1.420 | 0.01006 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 10 | 10 | B.1.110.3 | 0.007184 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 10 | 10 | B.1.177.7 | 0.001649 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 10 | 10 | B.1.628 | 0.003524 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 10 | 10 | B.1.629 | 0.133333 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 9 | 10 | C.37 | 0.001045 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 10 | C.37 | 0.000116 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 9 | 9 | AY.37 | 0.002845 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 9 | AY.98.1 | 0.000291 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 3 | 9 | AY.98.1 | 0.000145 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 8 | 8 | AM.4 | 0.028571 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 8 | 8 | B.1.1.285 | 0.052288 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 8 | 8 | B.1.606 | 0.048193 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 8 | 8 | Q.3 | 0.00116 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 7 | 7 | A.27 | 0.011589 |
ORF1ab/nsp12 | 838 | L838P | cTa | cCa | 6 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 838 | L838P | cTA | cCT | 1 | 7 | All | 0 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 7 | AY.42 | 0.000241 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 7 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 7 | 7 | AY.87 | 0.005828 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 5 | 6 | AY.100 | 0.00023 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 6 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 6 | 6 | AY.30 | 0.002374 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 6 | 6 | AY.41 | 0.001764 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 6 | B.1.1.117 | 0.058252 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 6 | B.1.1.207 | 0.007092 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 6 | B.1.416 | 0.007614 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp12 | 838 | L838R | cTa | cGa | 4 | 5 | All | 0.000001 |
ORF1ab/nsp12 | 838 | L838R | CTa | AGa | 1 | 5 | All | 0 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp12 | 838 | L838V | Cta | Gta | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 5 | 5 | B.1.551 | 0.006452 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 5 | D.2 | 0.000225 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 5 | D.2 | 0.000075 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 1 | 5 | D.2 | 0.000075 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 4 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 4 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 4 | AY.99.2 | 0.000276 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 4 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 4 | 4 | B | 0.000511 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | B.1.1.288 | 0.007663 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | B.1.1.291 | 0.00297 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp12 | 838 | L838V | Cta | Gta | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 4 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 4 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 4 | 4 | B.6.4 | 0.181818 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | A | 0.001161 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | A.5 | 0.005769 |
ORF1ab/nsp12 | 838 | L838del2 | CTA | T-- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 838 | L838T | CTa | ACa | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 838 | L838T | CTA | ACG | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.1.336 | 0.05 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 3 | 3 | B.1.1.380 | 0.029412 |
ORF1ab/nsp12 | 838 | L838R | cTa | cGa | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 838 | L838R | CTa | AGa | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 3 | B.1.177.86 | 0.000367 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 3 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.335 | 0.030928 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.36.22 | 0.003623 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 3 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 1 | 3 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | L.1 | 0.005714 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 3 | P.2 | 0.000373 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 3 | P.2 | 0.000187 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 838 | L838del2 | CTA | T-- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.133 | 0.016949 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.1.466 | 0.017391 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.108 | 0.011628 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.160.15 | 0.009901 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.165 | 0.02381 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.22.1 | 0.0625 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AA.5 | 0.016129 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp12 | 838 | L838del1 | ctA | ct- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 838 | L838Q | cTa | cAa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 838 | L838S | CTa | TCa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 838 | L838P | cTA | cCT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 838 | L838T | CTa | ACa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 838 | L838del1 | ctA | ct- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 838 | L838P | cTa | cCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 838 | L838V | Cta | Gta | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 838 | L838P | cTa | cCa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 838 | L838Q | cTa | cAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 838 | L838P | cTa | cCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 838 | L838R | cTa | cGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 838 | L838T | CTA | ACG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp12 | 838 | L838S | CTa | TCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 838 | L838P | cTa | cCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 838 | L838P | cTa | cCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 838 | L838P | cTa | cCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 838 | L838T | CTa | ACa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 838 | L838V | Cta | Gta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 838 | L838del2 | CTA | T-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.418 | 0.015873 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.499.1 | 0.111111 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 838 | L838V | Cta | Gta | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp12 | 838 | L838del | CTA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp12 | 838 | L838L | ctA | ctT | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.6.3 | 0.026316 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp12 | 838 | L838V | Cta | Gta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 838 | L838L | Cta | Tta | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 838 | L838R | cTa | cGa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 838 | L838I | Cta | Ata | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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