CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 830 | P830S | P5222S | nonsyn | Cct | Tct | 1593 | 1593 | 1 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830P | P5222P | syn | ccT | ccC | 661 | 604 | 0.913767 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830P | P5222P | syn | ccT | ccG | 661 | 32 | 0.0484115 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830P | P5222P | syn | ccT | ccA | 661 | 25 | 0.0378215 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830L | P5222L | nonsyn | cCt | cTt | 38 | 38 | 1 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830del | P5222del | del | CCT | --- | 31 | 31 | 1 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830H | P5222H | nonsyn | cCt | cAt | 13 | 12 | 0.923077 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830H | P5222H | nonsyn | cCT | cAC | 13 | 1 | 0.0769231 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830del1 | P5222del1 | del | ccT | cc- | 6 | 5 | 0.833333 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830del1 | P5222del1 | del | Cct | -ct | 6 | 1 | 0.166667 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830T | P5222T | nonsyn | Cct | Act | 5 | 5 | 1 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830del2 | P5222del2 | del | cCT | c-- | 3 | 2 | 0.666667 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830del2 | P5222del2 | del | CCt | --t | 3 | 1 | 0.333333 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830A | P5222A | nonsyn | Cct | Gct | 2 | 1 | 0.5 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830A | P5222A | nonsyn | CcT | GcC | 2 | 1 | 0.5 | 15928-15930 |
ORF1ab/nsp12 | 830 | P830N | P5222N | nonsyn | CCt | AAt | 1 | 1 | 1 | 15928-15930 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1593 | 1593 | All | 0.000305 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 680 | 680 | B.1.1.7 | 0.000609 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 604 | 661 | All | 0.000116 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 32 | 661 | All | 0.000006 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 25 | 661 | All | 0.000005 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 428 | 428 | AY.39.1 | 0.016955 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 242 | 242 | AY.4.2 | 0.005249 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 103 | 103 | AY.4 | 0.00016 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 74 | 74 | AY.25 | 0.000445 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 69 | 69 | B.1.2 | 0.000608 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 47 | 47 | B.1.617.2 | 0.000177 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 19 | 43 | B.1.1.7 | 0.000017 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 14 | 43 | B.1.1.7 | 0.000013 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 10 | 43 | B.1.1.7 | 0.000009 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 41 | 41 | B.1.351 | 0.001219 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 38 | 38 | All | 0.000007 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 36 | 36 | AY.4.2 | 0.000781 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 31 | 31 | All | 0.000006 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 29 | 29 | AY.103 | 0.00018 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 21 | 21 | B.1.9.3 | 0.807692 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 20 | 20 | B.1.526 | 0.00047 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 12 | 13 | All | 0.000002 |
ORF1ab/nsp12 | 830 | P830H | cCT | cAC | 1 | 13 | All | 0 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 11 | 12 | B.1.617.2 | 0.000041 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 12 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 9 | 11 | AY.103 | 0.000056 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 11 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 11 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 10 | 11 | AY.44 | 0.000061 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 11 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 8 | 9 | B.1 | 0.000073 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 6 | 7 | AY.4 | 0.000009 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 7 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 7 | 7 | AY.5.4 | 0.001937 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 7 | 7 | B.1.409 | 0.005469 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp12 | 830 | P830del1 | ccT | cc- | 5 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 830 | P830del1 | Cct | -ct | 1 | 6 | All | 0 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 4 | 6 | B.1.177 | 0.000053 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 2 | 6 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 830 | P830T | Cct | Act | 5 | 5 | All | 0.000001 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 4 | 4 | B.1.1.56 | 0.071429 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp12 | 830 | P830del2 | cCT | c-- | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 830 | P830del2 | CCt | --t | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 2 | 3 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 3 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 3 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 3 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 3 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 3 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp12 | 830 | P830A | CcT | GcC | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 830 | P830A | Cct | Gct | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 830 | P830T | Cct | Act | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp12 | 830 | P830del2 | cCT | c-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 830 | P830A | Cct | Gct | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 830 | P830A | CcT | GcC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 830 | P830N | CCt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AS.2 | 0.015625 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 830 | P830T | Cct | Act | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 830 | P830H | cCT | cAC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 830 | P830del1 | ccT | cc- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 830 | P830del2 | CCt | --t | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 830 | P830del1 | ccT | cc- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 830 | P830del1 | ccT | cc- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 830 | P830T | Cct | Act | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 830 | P830N | CCt | AAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp12 | 830 | P830del1 | ccT | cc- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp12 | 830 | P830del1 | Cct | -ct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 830 | P830H | cCt | cAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 830 | P830T | Cct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 830 | P830L | cCt | cTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 830 | P830del | CCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 830 | P830del1 | ccT | cc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccC | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 830 | P830P | ccT | ccG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 830 | P830S | Cct | Tct | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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