CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 830

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12830P830SP5222SnonsynCctTct15931593115928-15930
ORF1ab/nsp12830P830PP5222PsynccTccC6616040.91376715928-15930
ORF1ab/nsp12830P830PP5222PsynccTccG661320.048411515928-15930
ORF1ab/nsp12830P830PP5222PsynccTccA661250.037821515928-15930
ORF1ab/nsp12830P830LP5222LnonsyncCtcTt3838115928-15930
ORF1ab/nsp12830P830delP5222deldelCCT---3131115928-15930
ORF1ab/nsp12830P830HP5222HnonsyncCtcAt13120.92307715928-15930
ORF1ab/nsp12830P830HP5222HnonsyncCTcAC1310.076923115928-15930
ORF1ab/nsp12830P830del1P5222del1delccTcc-650.83333315928-15930
ORF1ab/nsp12830P830del1P5222del1delCct-ct610.16666715928-15930
ORF1ab/nsp12830P830TP5222TnonsynCctAct55115928-15930
ORF1ab/nsp12830P830del2P5222del2delcCTc--320.66666715928-15930
ORF1ab/nsp12830P830del2P5222del2delCCt--t310.33333315928-15930
ORF1ab/nsp12830P830AP5222AnonsynCctGct210.515928-15930
ORF1ab/nsp12830P830AP5222AnonsynCcTGcC210.515928-15930
ORF1ab/nsp12830P830NP5222NnonsynCCtAAt11115928-15930

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12830P830SCctTct15931593All0.000305
ORF1ab/nsp12830P830SCctTct680680B.1.1.70.000609
ORF1ab/nsp12830P830PccTccC604661All0.000116
ORF1ab/nsp12830P830PccTccG32661All0.000006
ORF1ab/nsp12830P830PccTccA25661All0.000005
ORF1ab/nsp12830P830PccTccC428428AY.39.10.016955
ORF1ab/nsp12830P830SCctTct242242AY.4.20.005249
ORF1ab/nsp12830P830SCctTct103103AY.40.00016
ORF1ab/nsp12830P830SCctTct7474AY.250.000445
ORF1ab/nsp12830P830SCctTct6969B.1.20.000608
ORF1ab/nsp12830P830SCctTct4747B.1.617.20.000177
ORF1ab/nsp12830P830PccTccC1943B.1.1.70.000017
ORF1ab/nsp12830P830PccTccG1443B.1.1.70.000013
ORF1ab/nsp12830P830PccTccA1043B.1.1.70.000009
ORF1ab/nsp12830P830SCctTct4141B.1.3510.001219
ORF1ab/nsp12830P830LcCtcTt3838All0.000007
ORF1ab/nsp12830P830PccTccC3636AY.4.20.000781
ORF1ab/nsp12830P830delCCT---3131All0.000006
ORF1ab/nsp12830P830SCctTct2929AY.1030.00018
ORF1ab/nsp12830P830SCctTct2121B.1.9.30.807692
ORF1ab/nsp12830P830SCctTct2020B.1.5260.00047
ORF1ab/nsp12830P830SCctTct1515AY.430.000066
ORF1ab/nsp12830P830delCCT---1515B.1.1.70.000013
ORF1ab/nsp12830P830LcCtcTt1414AY.40.000022
ORF1ab/nsp12830P830SCctTct1414AY.440.000085
ORF1ab/nsp12830P830HcCtcAt1213All0.000002
ORF1ab/nsp12830P830HcCTcAC113All0
ORF1ab/nsp12830P830PccTccC1112B.1.617.20.000041
ORF1ab/nsp12830P830PccTccG112B.1.617.20.000004
ORF1ab/nsp12830P830PccTccC911AY.1030.000056
ORF1ab/nsp12830P830PccTccA111AY.1030.000006
ORF1ab/nsp12830P830PccTccG111AY.1030.000006
ORF1ab/nsp12830P830PccTccC1011AY.440.000061
ORF1ab/nsp12830P830PccTccA111AY.440.000006
ORF1ab/nsp12830P830SCctTct1111B.10.000101
ORF1ab/nsp12830P830SCctTct1010B.1.4290.000235
ORF1ab/nsp12830P830PccTccC89B.10.000073
ORF1ab/nsp12830P830PccTccA19B.10.000009
ORF1ab/nsp12830P830SCctTct99B.1.1770.000119
ORF1ab/nsp12830P830SCctTct88AY.330.000534
ORF1ab/nsp12830P830SCctTct88D.20.0006
ORF1ab/nsp12830P830PccTccC67AY.40.000009
ORF1ab/nsp12830P830PccTccA17AY.40.000002
ORF1ab/nsp12830P830SCctTct77AY.5.40.001937
ORF1ab/nsp12830P830PccTccC77AY.610.000733
ORF1ab/nsp12830P830SCctTct77B.1.258.170.000728
ORF1ab/nsp12830P830SCctTct77B.1.4090.005469
ORF1ab/nsp12830P830SCctTct77P.10.00011
ORF1ab/nsp12830P830SCctTct77P.20.001306
ORF1ab/nsp12830P830del1ccTcc-56All0.000001
ORF1ab/nsp12830P830del1Cct-ct16All0
ORF1ab/nsp12830P830LcCtcTt66B.1.1.70.000005
ORF1ab/nsp12830P830PccTccC46B.1.1770.000053
ORF1ab/nsp12830P830PccTccA26B.1.1770.000026
ORF1ab/nsp12830P830TCctAct55All0.000001
ORF1ab/nsp12830P830SCctTct55AY.30.00005
ORF1ab/nsp12830P830SCctTct55AY.390.000124
ORF1ab/nsp12830P830SCctTct55AY.50.000103
ORF1ab/nsp12830P830PccTccG25B.1.10.000036
ORF1ab/nsp12830P830PccTccC25B.1.10.000036
ORF1ab/nsp12830P830PccTccA15B.1.10.000018
ORF1ab/nsp12830P830SCctTct55B.1.1.3170.002058
ORF1ab/nsp12830P830SCctTct55B.1.1.5190.000199
ORF1ab/nsp12830P830SCctTct55B.1.2580.000333
ORF1ab/nsp12830P830SCctTct44AY.1000.000184
ORF1ab/nsp12830P830SCctTct44AY.980.000316
ORF1ab/nsp12830P830SCctTct44B.1.10.000073
ORF1ab/nsp12830P830PccTccC44B.1.1.560.071429
ORF1ab/nsp12830P830LcCtcTt44B.1.20.000035
ORF1ab/nsp12830P830PccTccC34B.1.20.000026
ORF1ab/nsp12830P830PccTccG14B.1.20.000009
ORF1ab/nsp12830P830SCctTct44B.1.4250.011976
ORF1ab/nsp12830P830SCctTct44B.1.4270.000202
ORF1ab/nsp12830P830PccTccC44B.1.621.10.002023
ORF1ab/nsp12830P830del2cCTc--23All0
ORF1ab/nsp12830P830del2CCt--t13All0
ORF1ab/nsp12830P830SCctTct33AY.1020.00008
ORF1ab/nsp12830P830PccTccC33AY.1180.000188
ORF1ab/nsp12830P830SCctTct33AY.200.000117
ORF1ab/nsp12830P830PccTccC33AY.200.000117
ORF1ab/nsp12830P830HcCtcAt33AY.250.000018
ORF1ab/nsp12830P830PccTccG23AY.260.000057
ORF1ab/nsp12830P830PccTccC13AY.260.000028
ORF1ab/nsp12830P830PccTccC23AY.30.00002
ORF1ab/nsp12830P830PccTccA13AY.30.00001
ORF1ab/nsp12830P830PccTccC33AY.390.000074
ORF1ab/nsp12830P830SCctTct33AY.46.60.000217
ORF1ab/nsp12830P830SCctTct33AY.470.000093
ORF1ab/nsp12830P830SCctTct33AY.540.000286
ORF1ab/nsp12830P830PccTccC23AY.750.000112
ORF1ab/nsp12830P830PccTccA13AY.750.000056
ORF1ab/nsp12830P830SCctTct33AY.9.10.000251
ORF1ab/nsp12830P830SCctTct33AY.98.10.000145
ORF1ab/nsp12830P830PccTccC33B0.000383
ORF1ab/nsp12830P830HcCtcAt33B.10.000027
ORF1ab/nsp12830P830SCctTct33B.1.1.2160.002671
ORF1ab/nsp12830P830PccTccG33B.1.4700.004213
ORF1ab/nsp12830P830SCctTct33B.1.6370.000219
ORF1ab/nsp12830P830SCctTct33Q.80.000495
ORF1ab/nsp12830P830ACcTGcC12All0
ORF1ab/nsp12830P830ACctGct12All0
ORF1ab/nsp12830P830PccTccA22AY.1140.000462
ORF1ab/nsp12830P830SCctTct22AY.1200.000074
ORF1ab/nsp12830P830PccTccC22AY.16.10.00094
ORF1ab/nsp12830P830PccTccC22AY.250.000012
ORF1ab/nsp12830P830SCctTct22AY.260.000057
ORF1ab/nsp12830P830SCctTct22AY.39.10.000079
ORF1ab/nsp12830P830delCCT---22AY.4.50.000215
ORF1ab/nsp12830P830PccTccC22AY.420.00008
ORF1ab/nsp12830P830delCCT---22AY.430.000009
ORF1ab/nsp12830P830delCCT---22AY.440.000012
ORF1ab/nsp12830P830SCctTct22AY.60.000082
ORF1ab/nsp12830P830SCctTct22AY.7.20.001119
ORF1ab/nsp12830P830SCctTct22AY.870.001665
ORF1ab/nsp12830P830PccTccC22AY.98.10.000097
ORF1ab/nsp12830P830SCctTct22AY.99.20.000184
ORF1ab/nsp12830P830TCctAct22B.10.000018
ORF1ab/nsp12830P830LcCtcTt22B.10.000018
ORF1ab/nsp12830P830PccTccG22B.1.1.3180.000604
ORF1ab/nsp12830P830del2cCTc--22B.1.1.70.000002
ORF1ab/nsp12830P830ACctGct12B.1.1.70.000001
ORF1ab/nsp12830P830ACcTGcC12B.1.1.70.000001
ORF1ab/nsp12830P830delCCT---22B.1.1.700.000682
ORF1ab/nsp12830P830SCctTct22B.1.2210.000142
ORF1ab/nsp12830P830PccTccC22B.1.2580.000133
ORF1ab/nsp12830P830SCctTct22B.1.4260.002018
ORF1ab/nsp12830P830PccTccC22B.1.4270.000101
ORF1ab/nsp12830P830SCctTct22B.1.4700.002809
ORF1ab/nsp12830P830SCctTct22B.1.5250.000226
ORF1ab/nsp12830P830PccTccC22P.10.000032
ORF1ab/nsp12830P830SCctTct22P.1.140.000096
ORF1ab/nsp12830P830PccTccC22P.30.00319
ORF1ab/nsp12830P830HcCtcAt11A0.000387
ORF1ab/nsp12830P830SCctTct11A.10.000282
ORF1ab/nsp12830P830NCCtAAt11All0
ORF1ab/nsp12830P830SCctTct11AS.20.015625
ORF1ab/nsp12830P830LcCtcTt11AU.30.00211
ORF1ab/nsp12830P830PccTccC11AY.1000.000046
ORF1ab/nsp12830P830PccTccC11AY.1020.000027
ORF1ab/nsp12830P830SCctTct11AY.1050.000643
ORF1ab/nsp12830P830delCCT---11AY.1110.000183
ORF1ab/nsp12830P830TCctAct11AY.1110.000183
ORF1ab/nsp12830P830PccTccC11AY.1110.000183
ORF1ab/nsp12830P830SCctTct11AY.1130.000142
ORF1ab/nsp12830P830SCctTct11AY.120.000316
ORF1ab/nsp12830P830PccTccC11AY.1200.000037
ORF1ab/nsp12830P830LcCtcTt11AY.1200.000037
ORF1ab/nsp12830P830HcCTcAC11AY.120.10.000321
ORF1ab/nsp12830P830SCctTct11AY.16.10.00047
ORF1ab/nsp12830P830delCCT---11AY.190.00114
ORF1ab/nsp12830P830SCctTct11AY.190.00114
ORF1ab/nsp12830P830HcCtcAt11AY.200.000039
ORF1ab/nsp12830P830SCctTct11AY.3.10.000085
ORF1ab/nsp12830P830PccTccC11AY.380.000499
ORF1ab/nsp12830P830del1ccTcc-11AY.40.000002
ORF1ab/nsp12830P830del2CCt--t11AY.40.000002
ORF1ab/nsp12830P830LcCtcTt11AY.4.50.000107
ORF1ab/nsp12830P830HcCtcAt11AY.440.000006
ORF1ab/nsp12830P830del1ccTcc-11AY.440.000006
ORF1ab/nsp12830P830SCctTct11AY.460.000104
ORF1ab/nsp12830P830PccTccC11AY.460.000104
ORF1ab/nsp12830P830PccTccC11AY.46.20.000635
ORF1ab/nsp12830P830LcCtcTt11AY.470.000031
ORF1ab/nsp12830P830PccTccC11AY.50.000021
ORF1ab/nsp12830P830HcCtcAt11AY.520.000814
ORF1ab/nsp12830P830SCctTct11AY.590.00053
ORF1ab/nsp12830P830SCctTct11AY.600.000938
ORF1ab/nsp12830P830SCctTct11AY.620.000436
ORF1ab/nsp12830P830del1ccTcc-11AY.710.000475
ORF1ab/nsp12830P830delCCT---11AY.720.001361
ORF1ab/nsp12830P830SCctTct11AY.730.000665
ORF1ab/nsp12830P830SCctTct11AY.750.000056
ORF1ab/nsp12830P830SCctTct11AY.850.000427
ORF1ab/nsp12830P830HcCtcAt11AY.90.000068
ORF1ab/nsp12830P830SCctTct11AY.9.20.000037
ORF1ab/nsp12830P830PccTccC11AY.9.20.000037
ORF1ab/nsp12830P830SCctTct11AY.900.000684
ORF1ab/nsp12830P830SCctTct11AY.920.000287
ORF1ab/nsp12830P830SCctTct11AY.960.002075
ORF1ab/nsp12830P830PccTccC11AY.980.000079
ORF1ab/nsp12830P830PccTccC11AY.99.20.000092
ORF1ab/nsp12830P830LcCtcTt11B0.000128
ORF1ab/nsp12830P830TCctAct11B0.000128
ORF1ab/nsp12830P830NCCtAAt11B.10.000009
ORF1ab/nsp12830P830delCCT---11B.1.10.000018
ORF1ab/nsp12830P830LcCtcTt11B.1.10.000018
ORF1ab/nsp12830P830SCctTct11B.1.1.1170.009709
ORF1ab/nsp12830P830del1ccTcc-11B.1.1.1700.001247
ORF1ab/nsp12830P830SCctTct11B.1.1.1890.001513
ORF1ab/nsp12830P830SCctTct11B.1.1.2140.000055
ORF1ab/nsp12830P830PccTccC11B.1.1.2160.00089
ORF1ab/nsp12830P830PccTccG11B.1.1.2310.003096
ORF1ab/nsp12830P830LcCtcTt11B.1.1.2580.003257
ORF1ab/nsp12830P830SCctTct11B.1.1.280.000311
ORF1ab/nsp12830P830PccTccC11B.1.1.2910.000742
ORF1ab/nsp12830P830delCCT---11B.1.1.3110.000358
ORF1ab/nsp12830P830SCctTct11B.1.1.3160.000925
ORF1ab/nsp12830P830PccTccA11B.1.1.3170.000412
ORF1ab/nsp12830P830SCctTct11B.1.1.3180.000302
ORF1ab/nsp12830P830SCctTct11B.1.1.3370.003597
ORF1ab/nsp12830P830PccTccC11B.1.1.3510.002793
ORF1ab/nsp12830P830SCctTct11B.1.1.370.000193
ORF1ab/nsp12830P830SCctTct11B.1.1.3720.000689
ORF1ab/nsp12830P830SCctTct11B.1.1.500.000679
ORF1ab/nsp12830P830PccTccG11B.1.1.5190.00004
ORF1ab/nsp12830P830SCctTct11B.1.1.580.005376
ORF1ab/nsp12830P830del1Cct-ct11B.1.1.70.000001
ORF1ab/nsp12830P830SCctTct11B.1.1280.000635
ORF1ab/nsp12830P830LcCtcTt11B.1.1280.000635
ORF1ab/nsp12830P830SCctTct11B.1.1600.000031
ORF1ab/nsp12830P830LcCtcTt11B.1.1770.000013
ORF1ab/nsp12830P830PccTccG11B.1.177.210.000076
ORF1ab/nsp12830P830delCCT---11B.1.177.210.000076
ORF1ab/nsp12830P830PccTccA11B.1.177.40.000211
ORF1ab/nsp12830P830SCctTct11B.1.177.540.000606
ORF1ab/nsp12830P830PccTccA11B.1.177.60.000977
ORF1ab/nsp12830P830delCCT---11B.1.177.830.001481
ORF1ab/nsp12830P830HcCtcAt11B.1.20.000009
ORF1ab/nsp12830P830TCctAct11B.1.20.000009
ORF1ab/nsp12830P830PccTccC11B.1.214.30.007143
ORF1ab/nsp12830P830SCctTct11B.1.2180.005155
ORF1ab/nsp12830P830PccTccA11B.1.2210.000071
ORF1ab/nsp12830P830LcCtcTt11B.1.2210.000071
ORF1ab/nsp12830P830SCctTct11B.1.2410.000812
ORF1ab/nsp12830P830PccTccC11B.1.2430.00007
ORF1ab/nsp12830P830SCctTct11B.1.360.000146
ORF1ab/nsp12830P830SCctTct11B.1.36.260.002857
ORF1ab/nsp12830P830PccTccC11B.1.36.350.002604
ORF1ab/nsp12830P830LcCtcTt11B.1.4290.000024
ORF1ab/nsp12830P830SCctTct11B.1.438.10.000107
ORF1ab/nsp12830P830SCctTct11B.1.4520.013699
ORF1ab/nsp12830P830SCctTct11B.1.4530.003236
ORF1ab/nsp12830P830LcCtcTt11B.1.466.20.000391
ORF1ab/nsp12830P830PccTccG11B.1.5100.026316
ORF1ab/nsp12830P830SCctTct11B.1.5410.004425
ORF1ab/nsp12830P830PccTccC11B.1.5950.000261
ORF1ab/nsp12830P830SCctTct11B.1.5960.000087
ORF1ab/nsp12830P830PccTccC11B.1.617.10.000129
ORF1ab/nsp12830P830delCCT---11B.1.617.20.000004
ORF1ab/nsp12830P830del1ccTcc-11B.1.617.20.000004
ORF1ab/nsp12830P830SCctTct11B.1.6190.000871
ORF1ab/nsp12830P830SCctTct11B.1.6210.000089
ORF1ab/nsp12830P830SCctTct11B.1.621.10.000506
ORF1ab/nsp12830P830SCctTct11B.1.6230.000536
ORF1ab/nsp12830P830PccTccC11C.360.000911
ORF1ab/nsp12830P830PccTccG11C.370.000116
ORF1ab/nsp12830P830SCctTct11C.370.000116
ORF1ab/nsp12830P830SCctTct11C.40.01
ORF1ab/nsp12830P830SCctTct11P.1.120.000484
ORF1ab/nsp12830P830PccTccG11P.1.140.000048
ORF1ab/nsp12830P830SCctTct11P.30.001595
ORF1ab/nsp12830P830SCctTct11Q.10.000126
ORF1ab/nsp12830P830SCctTct11Q.20.000613
ORF1ab/nsp12830P830SCctTct11Q.30.000145