CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 828 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12828Y828YY5220YsyntaCtaT61186118115922-15924

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12828Y828YtaCtaT61186118All0.00117
ORF1ab/nsp12828Y828YtaCtaT22592259AY.941
ORF1ab/nsp12828Y828YtaCtaT12651265AY.40.001969
ORF1ab/nsp12828Y828YtaCtaT586586B.1.1.70.000525
ORF1ab/nsp12828Y828YtaCtaT269269AY.290.004243
ORF1ab/nsp12828Y828YtaCtaT193193B.1.617.20.000727
ORF1ab/nsp12828Y828YtaCtaT189189AY.430.000837
ORF1ab/nsp12828Y828YtaCtaT131131AY.360.019416
ORF1ab/nsp12828Y828YtaCtaT104104AY.440.000633
ORF1ab/nsp12828Y828YtaCtaT9898AY.1020.002598
ORF1ab/nsp12828Y828YtaCtaT9696AY.30.000955
ORF1ab/nsp12828Y828YtaCtaT9090B.1.4270.004545
ORF1ab/nsp12828Y828YtaCtaT6363B.1.10.001143
ORF1ab/nsp12828Y828YtaCtaT5656AY.250.000337
ORF1ab/nsp12828Y828YtaCtaT5252B.1.6370.0038
ORF1ab/nsp12828Y828YtaCtaT3838B.10.000348
ORF1ab/nsp12828Y828YtaCtaT3535AY.4.20.000759
ORF1ab/nsp12828Y828YtaCtaT3131B.1.1770.000408
ORF1ab/nsp12828Y828YtaCtaT2929C.71
ORF1ab/nsp12828Y828YtaCtaT2525B.1.1.1530.027382
ORF1ab/nsp12828Y828YtaCtaT2121B.1.3460.027523
ORF1ab/nsp12828Y828YtaCtaT2121P.10.000331
ORF1ab/nsp12828Y828YtaCtaT1818AY.1030.000112
ORF1ab/nsp12828Y828YtaCtaT1818B.1.1.280.005602
ORF1ab/nsp12828Y828YtaCtaT1818B.1.20.000158
ORF1ab/nsp12828Y828YtaCtaT1818B.1.5510.023226
ORF1ab/nsp12828Y828YtaCtaT1717B.1.5950.004436
ORF1ab/nsp12828Y828YtaCtaT1616B.1.177.100.014047
ORF1ab/nsp12828Y828YtaCtaT1515B.1.5260.000353
ORF1ab/nsp12828Y828YtaCtaT1414B.1.2340.001847
ORF1ab/nsp12828Y828YtaCtaT1414B.1.2400.003018
ORF1ab/nsp12828Y828YtaCtaT1212B.1.1.2140.000665
ORF1ab/nsp12828Y828YtaCtaT1111AY.46.40.00181
ORF1ab/nsp12828Y828YtaCtaT1111C.370.001277
ORF1ab/nsp12828Y828YtaCtaT99AY.390.000222
ORF1ab/nsp12828Y828YtaCtaT88AY.460.000833
ORF1ab/nsp12828Y828YtaCtaT88P.1.140.000382
ORF1ab/nsp12828Y828YtaCtaT77AY.5.30.002362
ORF1ab/nsp12828Y828YtaCtaT77B.1.4010.057377
ORF1ab/nsp12828Y828YtaCtaT77B.1.4290.000165
ORF1ab/nsp12828Y828YtaCtaT66AY.1200.000223
ORF1ab/nsp12828Y828YtaCtaT66AY.75.10.001082
ORF1ab/nsp12828Y828YtaCtaT66AY.98.10.000291
ORF1ab/nsp12828Y828YtaCtaT66B.1.177.810.001136
ORF1ab/nsp12828Y828YtaCtaT66B.1.6210.000531
ORF1ab/nsp12828Y828YtaCtaT55AY.230.000349
ORF1ab/nsp12828Y828YtaCtaT55B.1.1600.000156
ORF1ab/nsp12828Y828YtaCtaT55B.1.3510.000149
ORF1ab/nsp12828Y828YtaCtaT55B.1.36.290.002587
ORF1ab/nsp12828Y828YtaCtaT44A0.001548
ORF1ab/nsp12828Y828YtaCtaT44AY.1000.000184
ORF1ab/nsp12828Y828YtaCtaT44AY.1170.000338
ORF1ab/nsp12828Y828YtaCtaT44AY.1190.000141
ORF1ab/nsp12828Y828YtaCtaT44AY.200.000155
ORF1ab/nsp12828Y828YtaCtaT44AY.4.2.10.000596
ORF1ab/nsp12828Y828YtaCtaT44AY.420.000161
ORF1ab/nsp12828Y828YtaCtaT44AY.450.000487
ORF1ab/nsp12828Y828YtaCtaT44AY.610.000419
ORF1ab/nsp12828Y828YtaCtaT44B.1.1.3030.01105
ORF1ab/nsp12828Y828YtaCtaT44B.1.1.5190.000159
ORF1ab/nsp12828Y828YtaCtaT44B.1.1.630.001543
ORF1ab/nsp12828Y828YtaCtaT44B.1.617.10.000516
ORF1ab/nsp12828Y828YtaCtaT33AY.3.10.000256
ORF1ab/nsp12828Y828YtaCtaT33AY.300.001187
ORF1ab/nsp12828Y828YtaCtaT33AY.46.60.000217
ORF1ab/nsp12828Y828YtaCtaT33AY.500.002398
ORF1ab/nsp12828Y828YtaCtaT33AY.510.002727
ORF1ab/nsp12828Y828YtaCtaT33AY.530.000863
ORF1ab/nsp12828Y828YtaCtaT33AY.750.000168
ORF1ab/nsp12828Y828YtaCtaT33AY.9.10.000251
ORF1ab/nsp12828Y828YtaCtaT33AY.99.20.000276
ORF1ab/nsp12828Y828YtaCtaT33B.1.1.2190.015
ORF1ab/nsp12828Y828YtaCtaT33B.1.360.000438
ORF1ab/nsp12828Y828YtaCtaT33B.1.36.240.018519
ORF1ab/nsp12828Y828YtaCtaT22A.30.004193
ORF1ab/nsp12828Y828YtaCtaT22AY.10.000791
ORF1ab/nsp12828Y828YtaCtaT22AY.1160.000574
ORF1ab/nsp12828Y828YtaCtaT22AY.240.000862
ORF1ab/nsp12828Y828YtaCtaT22AY.330.000134
ORF1ab/nsp12828Y828YtaCtaT22AY.470.000062
ORF1ab/nsp12828Y828YtaCtaT22AY.50.000041
ORF1ab/nsp12828Y828YtaCtaT22AY.60.000082
ORF1ab/nsp12828Y828YtaCtaT22AY.7.10.000225
ORF1ab/nsp12828Y828YtaCtaT22AY.700.000417
ORF1ab/nsp12828Y828YtaCtaT22B.1.1.3110.000716
ORF1ab/nsp12828Y828YtaCtaT22B.1.177.540.001213
ORF1ab/nsp12828Y828YtaCtaT22B.1.177.600.000437
ORF1ab/nsp12828Y828YtaCtaT22B.1.177.70.00033
ORF1ab/nsp12828Y828YtaCtaT22B.1.221.20.008032
ORF1ab/nsp12828Y828YtaCtaT22B.1.2430.000139
ORF1ab/nsp12828Y828YtaCtaT22B.1.2580.000133
ORF1ab/nsp12828Y828YtaCtaT22B.1.466.20.000782
ORF1ab/nsp12828Y828YtaCtaT22B.1.5250.000226
ORF1ab/nsp12828Y828YtaCtaT22B.1.5380.016129
ORF1ab/nsp12828Y828YtaCtaT22B.1.5820.000981
ORF1ab/nsp12828Y828YtaCtaT22D.20.00015
ORF1ab/nsp12828Y828YtaCtaT22P.20.000373
ORF1ab/nsp12828Y828YtaCtaT11A.10.000282
ORF1ab/nsp12828Y828YtaCtaT11AY.1080.001103
ORF1ab/nsp12828Y828YtaCtaT11AY.1090.00074
ORF1ab/nsp12828Y828YtaCtaT11AY.1100.000113
ORF1ab/nsp12828Y828YtaCtaT11AY.160.00038
ORF1ab/nsp12828Y828YtaCtaT11AY.16.10.00047
ORF1ab/nsp12828Y828YtaCtaT11AY.190.00114
ORF1ab/nsp12828Y828YtaCtaT11AY.260.000028
ORF1ab/nsp12828Y828YtaCtaT11AY.29.10.000221
ORF1ab/nsp12828Y828YtaCtaT11AY.320.000532
ORF1ab/nsp12828Y828YtaCtaT11AY.4.50.000107
ORF1ab/nsp12828Y828YtaCtaT11AY.46.20.000635
ORF1ab/nsp12828Y828YtaCtaT11AY.480.000465
ORF1ab/nsp12828Y828YtaCtaT11AY.520.000814
ORF1ab/nsp12828Y828YtaCtaT11AY.540.000095
ORF1ab/nsp12828Y828YtaCtaT11AY.550.000917
ORF1ab/nsp12828Y828YtaCtaT11AY.570.000656
ORF1ab/nsp12828Y828YtaCtaT11AY.680.000274
ORF1ab/nsp12828Y828YtaCtaT11AY.710.000475
ORF1ab/nsp12828Y828YtaCtaT11AY.720.001361
ORF1ab/nsp12828Y828YtaCtaT11AY.730.000665
ORF1ab/nsp12828Y828YtaCtaT11AY.9.20.000037
ORF1ab/nsp12828Y828YtaCtaT11AY.980.000079
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.1360.021277
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.2010.02439
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.2160.00089
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.2430.004082
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.250.000569
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.3150.008475
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.3180.000302
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.3890.006061
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.4160.000905
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.4340.000349
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.440.00241
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.5280.004808
ORF1ab/nsp12828Y828YtaCtaT11B.1.160.120.00641
ORF1ab/nsp12828Y828YtaCtaT11B.1.177.120.000152
ORF1ab/nsp12828Y828YtaCtaT11B.1.177.330.001645
ORF1ab/nsp12828Y828YtaCtaT11B.1.177.830.001481
ORF1ab/nsp12828Y828YtaCtaT11B.1.258.170.000104
ORF1ab/nsp12828Y828YtaCtaT11B.1.351.30.000876
ORF1ab/nsp12828Y828YtaCtaT11B.1.4080.00369
ORF1ab/nsp12828Y828YtaCtaT11B.1.4090.000781
ORF1ab/nsp12828Y828YtaCtaT11B.1.438.10.000107
ORF1ab/nsp12828Y828YtaCtaT11B.1.5640.000426
ORF1ab/nsp12828Y828YtaCtaT11B.1.5750.000303
ORF1ab/nsp12828Y828YtaCtaT11B.1.5800.004065
ORF1ab/nsp12828Y828YtaCtaT11B.1.5960.000087
ORF1ab/nsp12828Y828YtaCtaT11B.1.619.10.000641
ORF1ab/nsp12828Y828YtaCtaT11B.400.000364
ORF1ab/nsp12828Y828YtaCtaT11P.1.10.000318
ORF1ab/nsp12828Y828YtaCtaT11P.1.100.000269
ORF1ab/nsp12828Y828YtaCtaT11P.1.20.001156
ORF1ab/nsp12828Y828YtaCtaT11P.30.001595
ORF1ab/nsp12828Y828YtaCtaT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.