CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 828

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12828Y828YY5220YsyntaCtaT61186118115922-15924
ORF1ab/nsp12828Y828HY5220HnonsynTacCac7979115922-15924
ORF1ab/nsp12828Y828CY5220CnonsyntActGc3939115922-15924
ORF1ab/nsp12828Y828delY5220deldelTAC---3434115922-15924
ORF1ab/nsp12828Y828NY5220NnonsynTacAac88115922-15924
ORF1ab/nsp12828Y828XY5220XnonsyntaCtaG33115922-15924
ORF1ab/nsp12828Y828FY5220FnonsyntActTc22115922-15924
ORF1ab/nsp12828Y828del2Y5220del2delTAc--c210.515922-15924
ORF1ab/nsp12828Y828del2Y5220del2deltACt--210.515922-15924
ORF1ab/nsp12828Y828RY5220RnonsynTAcCGc11115922-15924

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12828Y828YtaCtaT61186118All0.00117
ORF1ab/nsp12828Y828YtaCtaT22592259AY.941
ORF1ab/nsp12828Y828YtaCtaT12651265AY.40.001969
ORF1ab/nsp12828Y828YtaCtaT586586B.1.1.70.000525
ORF1ab/nsp12828Y828YtaCtaT269269AY.290.004243
ORF1ab/nsp12828Y828YtaCtaT193193B.1.617.20.000727
ORF1ab/nsp12828Y828YtaCtaT189189AY.430.000837
ORF1ab/nsp12828Y828YtaCtaT131131AY.360.019416
ORF1ab/nsp12828Y828YtaCtaT104104AY.440.000633
ORF1ab/nsp12828Y828YtaCtaT9898AY.1020.002598
ORF1ab/nsp12828Y828YtaCtaT9696AY.30.000955
ORF1ab/nsp12828Y828YtaCtaT9090B.1.4270.004545
ORF1ab/nsp12828Y828HTacCac7979All0.000015
ORF1ab/nsp12828Y828YtaCtaT6363B.1.10.001143
ORF1ab/nsp12828Y828YtaCtaT5656AY.250.000337
ORF1ab/nsp12828Y828YtaCtaT5252B.1.6370.0038
ORF1ab/nsp12828Y828CtActGc3939All0.000007
ORF1ab/nsp12828Y828YtaCtaT3838B.10.000348
ORF1ab/nsp12828Y828YtaCtaT3535AY.4.20.000759
ORF1ab/nsp12828Y828delTAC---3434All0.000007
ORF1ab/nsp12828Y828YtaCtaT3131B.1.1770.000408
ORF1ab/nsp12828Y828YtaCtaT2929C.71
ORF1ab/nsp12828Y828YtaCtaT2525B.1.1.1530.027382
ORF1ab/nsp12828Y828YtaCtaT2121B.1.3460.027523
ORF1ab/nsp12828Y828YtaCtaT2121P.10.000331
ORF1ab/nsp12828Y828YtaCtaT1818AY.1030.000112
ORF1ab/nsp12828Y828YtaCtaT1818B.1.1.280.005602
ORF1ab/nsp12828Y828delTAC---1818B.1.1.70.000016
ORF1ab/nsp12828Y828YtaCtaT1818B.1.20.000158
ORF1ab/nsp12828Y828YtaCtaT1818B.1.5510.023226
ORF1ab/nsp12828Y828YtaCtaT1717B.1.5950.004436
ORF1ab/nsp12828Y828YtaCtaT1616B.1.177.100.014047
ORF1ab/nsp12828Y828YtaCtaT1515B.1.5260.000353
ORF1ab/nsp12828Y828YtaCtaT1414B.1.2340.001847
ORF1ab/nsp12828Y828YtaCtaT1414B.1.2400.003018
ORF1ab/nsp12828Y828CtActGc1212AY.250.000072
ORF1ab/nsp12828Y828YtaCtaT1212B.1.1.2140.000665
ORF1ab/nsp12828Y828HTacCac1212B.200.27907
ORF1ab/nsp12828Y828YtaCtaT1111AY.46.40.00181
ORF1ab/nsp12828Y828YtaCtaT1111C.370.001277
ORF1ab/nsp12828Y828HTacCac1010AY.40.000016
ORF1ab/nsp12828Y828YtaCtaT99AY.390.000222
ORF1ab/nsp12828Y828NTacAac88All0.000002
ORF1ab/nsp12828Y828YtaCtaT88AY.460.000833
ORF1ab/nsp12828Y828YtaCtaT88P.1.140.000382
ORF1ab/nsp12828Y828YtaCtaT77AY.5.30.002362
ORF1ab/nsp12828Y828YtaCtaT77B.1.4010.057377
ORF1ab/nsp12828Y828YtaCtaT77B.1.4290.000165
ORF1ab/nsp12828Y828YtaCtaT66AY.1200.000223
ORF1ab/nsp12828Y828YtaCtaT66AY.75.10.001082
ORF1ab/nsp12828Y828YtaCtaT66AY.98.10.000291
ORF1ab/nsp12828Y828YtaCtaT66B.1.177.810.001136
ORF1ab/nsp12828Y828YtaCtaT66B.1.6210.000531
ORF1ab/nsp12828Y828YtaCtaT55AY.230.000349
ORF1ab/nsp12828Y828YtaCtaT55B.1.1600.000156
ORF1ab/nsp12828Y828YtaCtaT55B.1.3510.000149
ORF1ab/nsp12828Y828YtaCtaT55B.1.36.290.002587
ORF1ab/nsp12828Y828YtaCtaT44A0.001548
ORF1ab/nsp12828Y828YtaCtaT44AY.1000.000184
ORF1ab/nsp12828Y828YtaCtaT44AY.1170.000338
ORF1ab/nsp12828Y828YtaCtaT44AY.1190.000141
ORF1ab/nsp12828Y828YtaCtaT44AY.200.000155
ORF1ab/nsp12828Y828CtActGc44AY.40.000006
ORF1ab/nsp12828Y828YtaCtaT44AY.4.2.10.000596
ORF1ab/nsp12828Y828YtaCtaT44AY.420.000161
ORF1ab/nsp12828Y828HTacCac44AY.430.000018
ORF1ab/nsp12828Y828YtaCtaT44AY.450.000487
ORF1ab/nsp12828Y828YtaCtaT44AY.610.000419
ORF1ab/nsp12828Y828HTacCac44B.10.000037
ORF1ab/nsp12828Y828YtaCtaT44B.1.1.3030.01105
ORF1ab/nsp12828Y828CtActGc44B.1.1.3170.001647
ORF1ab/nsp12828Y828YtaCtaT44B.1.1.5190.000159
ORF1ab/nsp12828Y828YtaCtaT44B.1.1.630.001543
ORF1ab/nsp12828Y828HTacCac44B.1.1.70.000004
ORF1ab/nsp12828Y828YtaCtaT44B.1.617.10.000516
ORF1ab/nsp12828Y828HTacCac44P.1.170.000647
ORF1ab/nsp12828Y828XtaCtaG33All0.000001
ORF1ab/nsp12828Y828CtActGc33AY.1030.000019
ORF1ab/nsp12828Y828HTacCac33AY.1030.000019
ORF1ab/nsp12828Y828YtaCtaT33AY.3.10.000256
ORF1ab/nsp12828Y828YtaCtaT33AY.300.001187
ORF1ab/nsp12828Y828YtaCtaT33AY.46.60.000217
ORF1ab/nsp12828Y828YtaCtaT33AY.500.002398
ORF1ab/nsp12828Y828YtaCtaT33AY.510.002727
ORF1ab/nsp12828Y828YtaCtaT33AY.530.000863
ORF1ab/nsp12828Y828YtaCtaT33AY.750.000168
ORF1ab/nsp12828Y828YtaCtaT33AY.9.10.000251
ORF1ab/nsp12828Y828YtaCtaT33AY.99.20.000276
ORF1ab/nsp12828Y828YtaCtaT33B.1.1.2190.015
ORF1ab/nsp12828Y828HTacCac33B.1.1.3060.001315
ORF1ab/nsp12828Y828HTacCac33B.1.140.052632
ORF1ab/nsp12828Y828CtActGc33B.1.20.000026
ORF1ab/nsp12828Y828HTacCac33B.1.2320.001612
ORF1ab/nsp12828Y828NTacAac33B.1.3110.000824
ORF1ab/nsp12828Y828YtaCtaT33B.1.360.000438
ORF1ab/nsp12828Y828YtaCtaT33B.1.36.240.018519
ORF1ab/nsp12828Y828HTacCac33B.1.617.20.000011
ORF1ab/nsp12828Y828YtaCtaT22A.30.004193
ORF1ab/nsp12828Y828FtActTc22All0
ORF1ab/nsp12828Y828del2TAc--c12All0
ORF1ab/nsp12828Y828del2tACt--12All0
ORF1ab/nsp12828Y828YtaCtaT22AY.10.000791
ORF1ab/nsp12828Y828NTacAac22AY.1020.000053
ORF1ab/nsp12828Y828YtaCtaT22AY.1160.000574
ORF1ab/nsp12828Y828HTacCac22AY.1190.000071
ORF1ab/nsp12828Y828YtaCtaT22AY.240.000862
ORF1ab/nsp12828Y828HTacCac22AY.30.00002
ORF1ab/nsp12828Y828YtaCtaT22AY.330.000134
ORF1ab/nsp12828Y828delTAC---22AY.430.000009
ORF1ab/nsp12828Y828HTacCac22AY.440.000012
ORF1ab/nsp12828Y828YtaCtaT22AY.470.000062
ORF1ab/nsp12828Y828YtaCtaT22AY.50.000041
ORF1ab/nsp12828Y828YtaCtaT22AY.60.000082
ORF1ab/nsp12828Y828YtaCtaT22AY.7.10.000225
ORF1ab/nsp12828Y828YtaCtaT22AY.700.000417
ORF1ab/nsp12828Y828HTacCac22B0.000256
ORF1ab/nsp12828Y828XtaCtaG22B.1.10.000036
ORF1ab/nsp12828Y828YtaCtaT22B.1.1.3110.000716
ORF1ab/nsp12828Y828CtActGc22B.1.1.70.000002
ORF1ab/nsp12828Y828delTAC---22B.1.1.700.000682
ORF1ab/nsp12828Y828CtActGc22B.1.1640.029851
ORF1ab/nsp12828Y828YtaCtaT22B.1.177.540.001213
ORF1ab/nsp12828Y828YtaCtaT22B.1.177.600.000437
ORF1ab/nsp12828Y828YtaCtaT22B.1.177.70.00033
ORF1ab/nsp12828Y828YtaCtaT22B.1.221.20.008032
ORF1ab/nsp12828Y828YtaCtaT22B.1.2430.000139
ORF1ab/nsp12828Y828YtaCtaT22B.1.2580.000133
ORF1ab/nsp12828Y828HTacCac22B.1.4290.000047
ORF1ab/nsp12828Y828YtaCtaT22B.1.466.20.000782
ORF1ab/nsp12828Y828YtaCtaT22B.1.5250.000226
ORF1ab/nsp12828Y828YtaCtaT22B.1.5380.016129
ORF1ab/nsp12828Y828YtaCtaT22B.1.5820.000981
ORF1ab/nsp12828Y828HTacCac22B.190.074074
ORF1ab/nsp12828Y828HTacCac22B.460.041667
ORF1ab/nsp12828Y828YtaCtaT22D.20.00015
ORF1ab/nsp12828Y828HTacCac22D.20.00015
ORF1ab/nsp12828Y828YtaCtaT22P.20.000373
ORF1ab/nsp12828Y828YtaCtaT11A.10.000282
ORF1ab/nsp12828Y828HTacCac11A.10.000282
ORF1ab/nsp12828Y828RTAcCGc11All0
ORF1ab/nsp12828Y828YtaCtaT11AY.1080.001103
ORF1ab/nsp12828Y828YtaCtaT11AY.1090.00074
ORF1ab/nsp12828Y828YtaCtaT11AY.1100.000113
ORF1ab/nsp12828Y828delTAC---11AY.1110.000183
ORF1ab/nsp12828Y828HTacCac11AY.116.10.000311
ORF1ab/nsp12828Y828HTacCac11AY.1180.000063
ORF1ab/nsp12828Y828RTAcCGc11AY.120.10.000321
ORF1ab/nsp12828Y828YtaCtaT11AY.160.00038
ORF1ab/nsp12828Y828YtaCtaT11AY.16.10.00047
ORF1ab/nsp12828Y828delTAC---11AY.190.00114
ORF1ab/nsp12828Y828YtaCtaT11AY.190.00114
ORF1ab/nsp12828Y828HTacCac11AY.250.000006
ORF1ab/nsp12828Y828YtaCtaT11AY.260.000028
ORF1ab/nsp12828Y828HTacCac11AY.270.000065
ORF1ab/nsp12828Y828NTacAac11AY.290.000016
ORF1ab/nsp12828Y828YtaCtaT11AY.29.10.000221
ORF1ab/nsp12828Y828CtActGc11AY.30.00001
ORF1ab/nsp12828Y828YtaCtaT11AY.320.000532
ORF1ab/nsp12828Y828HTacCac11AY.340.000097
ORF1ab/nsp12828Y828delTAC---11AY.40.000002
ORF1ab/nsp12828Y828YtaCtaT11AY.4.50.000107
ORF1ab/nsp12828Y828delTAC---11AY.4.50.000107
ORF1ab/nsp12828Y828CtActGc11AY.440.000006
ORF1ab/nsp12828Y828del2TAc--c11AY.440.000006
ORF1ab/nsp12828Y828delTAC---11AY.440.000006
ORF1ab/nsp12828Y828YtaCtaT11AY.46.20.000635
ORF1ab/nsp12828Y828YtaCtaT11AY.480.000465
ORF1ab/nsp12828Y828YtaCtaT11AY.520.000814
ORF1ab/nsp12828Y828YtaCtaT11AY.540.000095
ORF1ab/nsp12828Y828YtaCtaT11AY.550.000917
ORF1ab/nsp12828Y828YtaCtaT11AY.570.000656
ORF1ab/nsp12828Y828YtaCtaT11AY.680.000274
ORF1ab/nsp12828Y828YtaCtaT11AY.710.000475
ORF1ab/nsp12828Y828delTAC---11AY.720.001361
ORF1ab/nsp12828Y828YtaCtaT11AY.720.001361
ORF1ab/nsp12828Y828YtaCtaT11AY.730.000665
ORF1ab/nsp12828Y828YtaCtaT11AY.9.20.000037
ORF1ab/nsp12828Y828YtaCtaT11AY.980.000079
ORF1ab/nsp12828Y828FtActTc11B.10.000009
ORF1ab/nsp12828Y828CtActGc11B.10.000009
ORF1ab/nsp12828Y828XtaCtaG11B.10.000009
ORF1ab/nsp12828Y828NTacAac11B.10.000009
ORF1ab/nsp12828Y828delTAC---11B.1.10.000018
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.1360.021277
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.2010.02439
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.2160.00089
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.2430.004082
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.250.000569
ORF1ab/nsp12828Y828delTAC---11B.1.1.3110.000358
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.3150.008475
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.3180.000302
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.3890.006061
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.4160.000905
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.4340.000349
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.440.00241
ORF1ab/nsp12828Y828YtaCtaT11B.1.1.5280.004808
ORF1ab/nsp12828Y828NTacAac11B.1.1180.006711
ORF1ab/nsp12828Y828YtaCtaT11B.1.160.120.00641
ORF1ab/nsp12828Y828CtActGc11B.1.1770.000013
ORF1ab/nsp12828Y828YtaCtaT11B.1.177.120.000152
ORF1ab/nsp12828Y828delTAC---11B.1.177.210.000076
ORF1ab/nsp12828Y828YtaCtaT11B.1.177.330.001645
ORF1ab/nsp12828Y828YtaCtaT11B.1.177.830.001481
ORF1ab/nsp12828Y828delTAC---11B.1.177.830.001481
ORF1ab/nsp12828Y828HTacCac11B.1.177.860.000183
ORF1ab/nsp12828Y828CtActGc11B.1.2430.00007
ORF1ab/nsp12828Y828CtActGc11B.1.2580.000067
ORF1ab/nsp12828Y828YtaCtaT11B.1.258.170.000104
ORF1ab/nsp12828Y828delTAC---11B.1.3110.000275
ORF1ab/nsp12828Y828HTacCac11B.1.3200.001245
ORF1ab/nsp12828Y828YtaCtaT11B.1.351.30.000876
ORF1ab/nsp12828Y828YtaCtaT11B.1.4080.00369
ORF1ab/nsp12828Y828YtaCtaT11B.1.4090.000781
ORF1ab/nsp12828Y828YtaCtaT11B.1.438.10.000107
ORF1ab/nsp12828Y828CtActGc11B.1.5250.000113
ORF1ab/nsp12828Y828YtaCtaT11B.1.5640.000426
ORF1ab/nsp12828Y828YtaCtaT11B.1.5750.000303
ORF1ab/nsp12828Y828YtaCtaT11B.1.5800.004065
ORF1ab/nsp12828Y828CtActGc11B.1.5950.000261
ORF1ab/nsp12828Y828YtaCtaT11B.1.5960.000087
ORF1ab/nsp12828Y828delTAC---11B.1.617.20.000004
ORF1ab/nsp12828Y828del2tACt--11B.1.617.20.000004
ORF1ab/nsp12828Y828CtActGc11B.1.617.20.000004
ORF1ab/nsp12828Y828YtaCtaT11B.1.619.10.000641
ORF1ab/nsp12828Y828HTacCac11B.1.6370.000073
ORF1ab/nsp12828Y828YtaCtaT11B.400.000364
ORF1ab/nsp12828Y828YtaCtaT11P.1.10.000318
ORF1ab/nsp12828Y828YtaCtaT11P.1.100.000269
ORF1ab/nsp12828Y828YtaCtaT11P.1.20.001156
ORF1ab/nsp12828Y828YtaCtaT11P.30.001595
ORF1ab/nsp12828Y828FtActTc11Q.30.000145
ORF1ab/nsp12828Y828YtaCtaT11Q.30.000145
ORF1ab/nsp12828Y828HTacCac11Q.30.000145