CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 822 | Q822H | Q5214H | nonsyn | caG | caT | 27471 | 27307 | 0.99403 | 15904-15906 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 27307 | 27471 | All | 0.005223 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9167 | 9168 | B.1.617.2 | 0.034518 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6124 | 6124 | AY.102 | 0.162371 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2174 | 2174 | B.1.351 | 0.064625 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 781 | 783 | AY.4 | 0.001216 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 687 | 687 | AY.44 | 0.004182 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 618 | 618 | AY.39 | 0.015272 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 569 | 591 | B.1.1.7 | 0.000509 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 443 | 443 | AY.116 | 0.127043 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 378 | 378 | AY.43 | 0.001675 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 261 | 261 | B.1.1.519 | 0.010365 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 254 | 254 | AY.120 | 0.009443 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 246 | 246 | AY.86 | 0.204149 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 241 | 241 | AY.9.2 | 0.008852 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 206 | 207 | AY.103 | 0.001279 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 186 | 186 | AY.46 | 0.019359 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 110 | 186 | B.1.526 | 0.002585 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 169 | 169 | AY.120.2.1 | 0.084205 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 168 | 168 | B.1.1 | 0.003048 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 161 | 161 | AY.42 | 0.006477 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 161 | 161 | B.1.1.63 | 0.062114 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 151 | 151 | B.1.177.21 | 0.011547 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 141 | 141 | AY.25 | 0.000848 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 138 | 138 | AY.61 | 0.014459 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 135 | 135 | AY.75 | 0.007563 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 123 | 123 | B.1 | 0.001127 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 113 | 113 | AY.45 | 0.01375 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 108 | 108 | B.1.1.159 | 0.504673 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 65 | 103 | AY.3 | 0.000647 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 102 | 102 | AY.98 | 0.008058 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 98 | 99 | B.1.2 | 0.000863 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 96 | 96 | AY.33 | 0.006411 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 95 | 95 | AY.118 | 0.005952 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 93 | 93 | B.1.36 | 0.013569 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 87 | 87 | B.1.429 | 0.002047 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 87 | 87 | P.1 | 0.001371 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 86 | 86 | AY.104 | 0.170635 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 86 | 86 | AY.117 | 0.007268 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 77 | 77 | B.1.293 | 0.9625 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 73 | 73 | AY.5 | 0.001507 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 67 | 67 | AY.34.1 | 0.034166 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 65 | 66 | B.1.177 | 0.000856 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 63 | 63 | AY.5.3 | 0.021255 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 61 | 61 | AY.4.2 | 0.001323 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 59 | 59 | B.1.427 | 0.002979 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 55 | 57 | B.1.1.214 | 0.00305 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 54 | 54 | AY.100 | 0.002484 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 49 | 49 | B.1.239 | 0.059829 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 49 | 49 | B.1.438.1 | 0.005256 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 47 | 47 | B.1.160 | 0.001466 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 46 | 46 | AY.46.4 | 0.007567 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 45 | 45 | AY.75.1 | 0.008114 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 41 | 41 | AY.119 | 0.001448 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 38 | 38 | AY.111 | 0.00696 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 38 | 38 | B.1.1.432 | 0.048101 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 37 | 37 | AY.23 | 0.002581 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 34 | 34 | AY.29 | 0.000536 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 33 | 33 | AY.39.1 | 0.001307 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 33 | 33 | AY.47 | 0.001026 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 30 | 30 | AY.115 | 0.15625 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 30 | 30 | AY.46.6 | 0.002166 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 28 | 28 | AY.27 | 0.001812 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 26 | 26 | AY.55 | 0.023853 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 26 | 26 | AY.85 | 0.011106 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 24 | 25 | AY.20 | 0.000933 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 25 | 25 | B.1.221 | 0.001776 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 24 | 24 | AY.84 | 0.010499 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 24 | 24 | B.1.408 | 0.088561 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 23 | 23 | B.1.210 | 0.049041 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 22 | 22 | AY.46.2 | 0.013977 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 22 | 22 | C.26 | 0.161765 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 21 | 21 | AY.110 | 0.002366 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 21 | 21 | B.1.1.37 | 0.00405 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 20 | 20 | AY.41 | 0.005879 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 20 | 20 | AY.99 | 0.020986 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 19 | 19 | AY.77 | 0.021421 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 19 | 19 | B.1.1.222 | 0.003876 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 18 | 18 | AY.26 | 0.00051 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 17 | 17 | AY.92 | 0.004884 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 16 | 16 | AY.106 | 0.005358 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 16 | 16 | AY.108 | 0.017641 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 16 | 16 | AY.114 | 0.003698 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 16 | 16 | AY.64 | 0.009524 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 16 | 16 | B.1.426 | 0.016145 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 15 | 15 | AY.105 | 0.009646 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 15 | 15 | AY.32 | 0.007987 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 15 | 15 | AY.68 | 0.004106 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 15 | 15 | AY.98.1 | 0.000726 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 14 | 14 | AY.95 | 0.010654 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 13 | 13 | AY.5.4 | 0.003597 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 13 | 13 | B.1.243 | 0.000905 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 13 | 13 | B.1.400 | 0.005577 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 13 | 13 | B.1.595 | 0.003392 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 12 | 12 | B.1.1.202 | 0.923077 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 11 | 11 | AY.50 | 0.008793 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 11 | P.2 | 0.001866 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 10 | AY.121 | 0.001218 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | AY.56 | 0.016051 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | AY.74 | 0.001156 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | AY.78 | 0.015408 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | AY.79 | 0.012107 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | B.1.177.52 | 0.017575 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | AG.1 | 0.6 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | AY.46.1 | 0.00924 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | AY.58 | 0.008167 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | AY.80 | 0.010158 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | B.1.1.523 | 0.014063 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | B.1.160.16 | 0.008364 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | B.1.349 | 0.006433 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | B.1.466.2 | 0.003521 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 9 | 9 | P.1.17 | 0.001456 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 8 | 8 | AY.70 | 0.001668 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 8 | 8 | AY.90 | 0.005476 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 8 | 8 | B.1.177.60 | 0.001747 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 7 | 8 | P.1.14 | 0.000335 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 7 | 7 | B.1.575 | 0.002124 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6 | 6 | AY.88 | 0.005305 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6 | 6 | B.1.351.2 | 0.001815 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6 | 6 | B.1.509 | 0.005195 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | AY.11 | 0.006693 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | AY.120.1 | 0.001605 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | AY.19 | 0.005701 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | AY.89 | 0.02451 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | B.1.1.322 | 0.04386 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | B.1.1.332 | 0.15625 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | B.1.177.12 | 0.000758 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | AY.17 | 0.032787 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | AY.57 | 0.002625 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | B.1.1.232 | 0.00726 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | B.1.1.462 | 0.034483 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | AY.21 | 0.005693 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 3 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.1.133 | 0.025424 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.1.161 | 0.010601 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.1.255 | 0.009091 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | B.1.8 | 0.005917 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 2 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | AZ.3 | 0.00304 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.44 | 0.004819 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.1.522 | 0.034483 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.36.39 | 0.004435 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.397 | 0.009709 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.511 | 0.068966 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.562 | 0.037037 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.109 | 0.04 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp12 | 822 | Q822H | caG | caT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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