CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 814

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12814S814SS5206SsyntcTtcG14935147270.98607315880-15882
ORF1ab/nsp12814S814SS5206SsyntcTtcC149351980.013257415880-15882
ORF1ab/nsp12814S814SS5206SsyntcTtcA14935100.00066956815880-15882
ORF1ab/nsp12814S814YS5206YnonsyntCttAt2626115880-15882
ORF1ab/nsp12814S814FS5206FnonsyntCttTt1717115880-15882
ORF1ab/nsp12814S814PS5206PnonsynTctCct1313115880-15882
ORF1ab/nsp12814S814delS5206deldelTCT---66115880-15882
ORF1ab/nsp12814S814AS5206AnonsynTctGct66115880-15882
ORF1ab/nsp12814S814del1S5206del1delTct-ct320.66666715880-15882
ORF1ab/nsp12814S814del1S5206del1deltCtt-t310.33333315880-15882
ORF1ab/nsp12814S814TS5206TnonsynTctAct22115880-15882
ORF1ab/nsp12814S814CS5206CnonsyntCttGt22115880-15882
ORF1ab/nsp12814S814del2S5206del2deltCTt--210.515880-15882
ORF1ab/nsp12814S814del2S5206del2delTCt--t210.515880-15882
ORF1ab/nsp12814S814RS5206RnonsynTCTAGG11115880-15882
ORF1ab/nsp12814S814LS5206LnonsynTCtCTt11115880-15882

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12814S814StcTtcG1472714935All0.002817
ORF1ab/nsp12814S814StcTtcC19814935All0.000038
ORF1ab/nsp12814S814StcTtcA1014935All0.000002
ORF1ab/nsp12814S814StcTtcG86638663AY.7.10.976333
ORF1ab/nsp12814S814StcTtcG38193819AY.70.74853
ORF1ab/nsp12814S814StcTtcG16301630AY.7.20.911633
ORF1ab/nsp12814S814StcTtcG158190AY.1030.000981
ORF1ab/nsp12814S814StcTtcC32190AY.1030.000199
ORF1ab/nsp12814S814StcTtcG133133AY.420.005351
ORF1ab/nsp12814S814StcTtcG68103B.1.617.20.000256
ORF1ab/nsp12814S814StcTtcC35103B.1.617.20.000132
ORF1ab/nsp12814S814StcTtcG4050AY.40.000062
ORF1ab/nsp12814S814StcTtcC950AY.40.000014
ORF1ab/nsp12814S814StcTtcA150AY.40.000002
ORF1ab/nsp12814S814StcTtcG3737AY.60.001522
ORF1ab/nsp12814S814YtCttAt2626All0.000005
ORF1ab/nsp12814S814StcTtcC1322B.1.1.70.000012
ORF1ab/nsp12814S814StcTtcG922B.1.1.70.000008
ORF1ab/nsp12814S814StcTtcC1118AY.430.000049
ORF1ab/nsp12814S814StcTtcG718AY.430.000031
ORF1ab/nsp12814S814FtCttTt1717All0.000003
ORF1ab/nsp12814S814StcTtcG1717AY.110.022758
ORF1ab/nsp12814S814StcTtcG1616B.1.5610.006352
ORF1ab/nsp12814S814PTctCct1313All0.000002
ORF1ab/nsp12814S814StcTtcC1313B.1.20.000114
ORF1ab/nsp12814S814StcTtcG1212AY.880.01061
ORF1ab/nsp12814S814StcTtcC1212B.1.3510.000357
ORF1ab/nsp12814S814StcTtcG1011AY.50.000206
ORF1ab/nsp12814S814StcTtcC111AY.50.000021
ORF1ab/nsp12814S814StcTtcG1010AY.1130.001424
ORF1ab/nsp12814S814YtCttAt1010B.10.000092
ORF1ab/nsp12814S814StcTtcC89AY.1190.000282
ORF1ab/nsp12814S814StcTtcG19AY.1190.000035
ORF1ab/nsp12814S814StcTtcG99AY.1210.001218
ORF1ab/nsp12814S814StcTtcC59AY.750.00028
ORF1ab/nsp12814S814StcTtcG49AY.750.000224
ORF1ab/nsp12814S814StcTtcG78AY.840.003062
ORF1ab/nsp12814S814StcTtcA18AY.840.000437
ORF1ab/nsp12814S814delTCT---66All0.000001
ORF1ab/nsp12814S814ATctGct66All0.000001
ORF1ab/nsp12814S814StcTtcG66AY.1110.001099
ORF1ab/nsp12814S814StcTtcC66AY.200.000233
ORF1ab/nsp12814S814StcTtcC46AY.440.000024
ORF1ab/nsp12814S814StcTtcG16AY.440.000006
ORF1ab/nsp12814S814StcTtcA16AY.440.000006
ORF1ab/nsp12814S814StcTtcG56AY.450.000608
ORF1ab/nsp12814S814StcTtcC16AY.450.000122
ORF1ab/nsp12814S814StcTtcC35AY.1000.000138
ORF1ab/nsp12814S814StcTtcG25AY.1000.000092
ORF1ab/nsp12814S814StcTtcC55P.10.000079
ORF1ab/nsp12814S814StcTtcG24AY.1170.000169
ORF1ab/nsp12814S814StcTtcC24AY.1170.000169
ORF1ab/nsp12814S814StcTtcC44AY.250.000024
ORF1ab/nsp12814S814StcTtcG44AY.4.30.003367
ORF1ab/nsp12814S814StcTtcC34AY.4.50.000322
ORF1ab/nsp12814S814StcTtcG14AY.4.50.000107
ORF1ab/nsp12814S814StcTtcG44AY.5.30.00135
ORF1ab/nsp12814S814StcTtcG44AY.580.00363
ORF1ab/nsp12814S814StcTtcC34B.10.000027
ORF1ab/nsp12814S814StcTtcG14B.10.000009
ORF1ab/nsp12814S814StcTtcG44B.1.1600.000125
ORF1ab/nsp12814S814FtCttTt44B.1.1770.000053
ORF1ab/nsp12814S814del1Tct-ct23All0
ORF1ab/nsp12814S814del1tCtt-t13All0
ORF1ab/nsp12814S814StcTtcG33AY.1060.001005
ORF1ab/nsp12814S814StcTtcA23AY.30.00002
ORF1ab/nsp12814S814StcTtcG13AY.30.00001
ORF1ab/nsp12814S814StcTtcG23AY.390.000049
ORF1ab/nsp12814S814StcTtcC13AY.390.000025
ORF1ab/nsp12814S814StcTtcG33AY.39.1.10.002174
ORF1ab/nsp12814S814ATctGct33AY.40.000005
ORF1ab/nsp12814S814YtCttAt33AY.430.000013
ORF1ab/nsp12814S814StcTtcG33AY.980.000237
ORF1ab/nsp12814S814FtCttTt33B.10.000027
ORF1ab/nsp12814S814StcTtcC23B.1.10.000036
ORF1ab/nsp12814S814StcTtcG13B.1.10.000018
ORF1ab/nsp12814S814FtCttTt33B.1.1.70.000003
ORF1ab/nsp12814S814StcTtcC23B.1.1770.000026
ORF1ab/nsp12814S814StcTtcG13B.1.1770.000013
ORF1ab/nsp12814S814StcTtcC23B.1.5250.000226
ORF1ab/nsp12814S814StcTtcA13B.1.5250.000113
ORF1ab/nsp12814S814StcTtcG23B.1.621.10.001012
ORF1ab/nsp12814S814StcTtcC13B.1.621.10.000506
ORF1ab/nsp12814S814TTctAct22All0
ORF1ab/nsp12814S814CtCttGt22All0
ORF1ab/nsp12814S814del2TCt--t12All0
ORF1ab/nsp12814S814del2tCTt--12All0
ORF1ab/nsp12814S814StcTtcG12AY.1020.000027
ORF1ab/nsp12814S814StcTtcC12AY.1020.000027
ORF1ab/nsp12814S814StcTtcG22AY.1160.000574
ORF1ab/nsp12814S814StcTtcG22AY.120.000632
ORF1ab/nsp12814S814StcTtcG22AY.380.000999
ORF1ab/nsp12814S814StcTtcG22AY.46.60.000144
ORF1ab/nsp12814S814StcTtcG22AY.560.00321
ORF1ab/nsp12814S814StcTtcG22AY.640.00119
ORF1ab/nsp12814S814StcTtcG22AY.99.10.003106
ORF1ab/nsp12814S814PTctCct22B.10.000018
ORF1ab/nsp12814S814YtCttAt22B.1.10.000036
ORF1ab/nsp12814S814delTCT---22B.1.1.70.000002
ORF1ab/nsp12814S814StcTtcC22B.1.4090.001563
ORF1ab/nsp12814S814StcTtcC22B.1.4290.000047
ORF1ab/nsp12814S814delTCT---22B.1.617.20.000008
ORF1ab/nsp12814S814del1tCtt-t11A0.000387
ORF1ab/nsp12814S814YtCttAt11A0.000387
ORF1ab/nsp12814S814StcTtcC11A.2.50.000499
ORF1ab/nsp12814S814RTCTAGG11All0
ORF1ab/nsp12814S814LTCtCTt11All0
ORF1ab/nsp12814S814ATctGct11AY.1030.000006
ORF1ab/nsp12814S814FtCttTt11AY.116.10.000311
ORF1ab/nsp12814S814PTctCct11AY.120.10.000321
ORF1ab/nsp12814S814StcTtcC11AY.16.10.00047
ORF1ab/nsp12814S814StcTtcC11AY.260.000028
ORF1ab/nsp12814S814StcTtcC11AY.3.10.000085
ORF1ab/nsp12814S814YtCttAt11AY.330.000067
ORF1ab/nsp12814S814StcTtcC11AY.340.000097
ORF1ab/nsp12814S814YtCttAt11AY.40.000002
ORF1ab/nsp12814S814ATctGct11AY.440.000006
ORF1ab/nsp12814S814PTctCct11AY.440.000006
ORF1ab/nsp12814S814YtCttAt11AY.440.000006
ORF1ab/nsp12814S814StcTtcG11AY.460.000104
ORF1ab/nsp12814S814StcTtcG11AY.46.10.001027
ORF1ab/nsp12814S814StcTtcA11AY.46.40.000165
ORF1ab/nsp12814S814YtCttAt11AY.520.000814
ORF1ab/nsp12814S814StcTtcC11AY.610.000105
ORF1ab/nsp12814S814StcTtcG11AY.690.000187
ORF1ab/nsp12814S814StcTtcG11AY.730.000665
ORF1ab/nsp12814S814delTCT---11AY.75.10.00018
ORF1ab/nsp12814S814PTctCct11AY.790.001211
ORF1ab/nsp12814S814StcTtcG11AY.860.00083
ORF1ab/nsp12814S814StcTtcG11AY.890.004902
ORF1ab/nsp12814S814StcTtcG11AY.900.000684
ORF1ab/nsp12814S814YtCttAt11AY.920.000287
ORF1ab/nsp12814S814StcTtcG11AY.950.000761
ORF1ab/nsp12814S814StcTtcG11AY.98.10.000048
ORF1ab/nsp12814S814StcTtcG11AY.990.001049
ORF1ab/nsp12814S814PTctCct11B0.000128
ORF1ab/nsp12814S814FtCttTt11B0.000128
ORF1ab/nsp12814S814YtCttAt11B0.000128
ORF1ab/nsp12814S814TTctAct11B.10.000009
ORF1ab/nsp12814S814del2tCTt--11B.1.10.000018
ORF1ab/nsp12814S814RTCTAGG11B.1.10.000018
ORF1ab/nsp12814S814CtCttGt11B.1.10.000018
ORF1ab/nsp12814S814StcTtcA11B.1.1.1610.003534
ORF1ab/nsp12814S814StcTtcA11B.1.1.280.000311
ORF1ab/nsp12814S814StcTtcC11B.1.1.5190.00004
ORF1ab/nsp12814S814FtCttTt11B.1.1.5190.00004
ORF1ab/nsp12814S814PTctCct11B.1.1.5190.00004
ORF1ab/nsp12814S814PTctCct11B.1.1.70.000001
ORF1ab/nsp12814S814CtCttGt11B.1.1.70.000001
ORF1ab/nsp12814S814YtCttAt11B.1.1.70.000001
ORF1ab/nsp12814S814StcTtcC11B.1.160.150.00495
ORF1ab/nsp12814S814ATctGct11B.1.1770.000013
ORF1ab/nsp12814S814PTctCct11B.1.1770.000013
ORF1ab/nsp12814S814StcTtcC11B.1.177.440.000519
ORF1ab/nsp12814S814StcTtcG11B.1.177.450.000381
ORF1ab/nsp12814S814StcTtcA11B.1.177.560.000668
ORF1ab/nsp12814S814del1Tct-ct11B.1.177.690.001484
ORF1ab/nsp12814S814StcTtcC11B.1.177.80.000752
ORF1ab/nsp12814S814delTCT---11B.1.177.830.001481
ORF1ab/nsp12814S814PTctCct11B.1.20.000009
ORF1ab/nsp12814S814YtCttAt11B.1.3010.005917
ORF1ab/nsp12814S814LTCtCTt11B.1.3330.010526
ORF1ab/nsp12814S814FtCttTt11B.1.3550.011111
ORF1ab/nsp12814S814PTctCct11B.1.360.000146
ORF1ab/nsp12814S814FtCttTt11B.1.36.160.001425
ORF1ab/nsp12814S814StcTtcC11B.1.36.270.000763
ORF1ab/nsp12814S814YtCttAt11B.1.4160.001269
ORF1ab/nsp12814S814PTctCct11B.1.4270.00005
ORF1ab/nsp12814S814StcTtcC11B.1.4270.00005
ORF1ab/nsp12814S814StcTtcG11B.1.5960.000087
ORF1ab/nsp12814S814TTctAct11B.1.5960.000087
ORF1ab/nsp12814S814YtCttAt11B.1.6230.000536
ORF1ab/nsp12814S814del2TCt--t11C.360.000911
ORF1ab/nsp12814S814FtCttTt11D.20.000075
ORF1ab/nsp12814S814PTctCct11D.20.000075
ORF1ab/nsp12814S814FtCttTt11P.10.000016
ORF1ab/nsp12814S814StcTtcC11P.1.160.000374
ORF1ab/nsp12814S814del1Tct-ct11Q.10.000126
ORF1ab/nsp12814S814StcTtcC11Q.30.000145
ORF1ab/nsp12814S814StcTtcC11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.