CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 814

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12814S814SS5206SsyntcTtcG14935147270.98607315880-15882
ORF1ab/nsp12814S814SS5206SsyntcTtcC149351980.013257415880-15882
ORF1ab/nsp12814S814SS5206SsyntcTtcA14935100.00066956815880-15882
ORF1ab/nsp12814S814YS5206YnonsyntCttAt2626115880-15882
ORF1ab/nsp12814S814FS5206FnonsyntCttTt1717115880-15882
ORF1ab/nsp12814S814PS5206PnonsynTctCct1313115880-15882
ORF1ab/nsp12814S814delS5206deldelTCT---66115880-15882
ORF1ab/nsp12814S814AS5206AnonsynTctGct66115880-15882
ORF1ab/nsp12814S814del1S5206del1delTct-ct320.66666715880-15882
ORF1ab/nsp12814S814del1S5206del1deltCtt-t310.33333315880-15882
ORF1ab/nsp12814S814TS5206TnonsynTctAct22115880-15882
ORF1ab/nsp12814S814CS5206CnonsyntCttGt22115880-15882
ORF1ab/nsp12814S814del2S5206del2deltCTt--210.515880-15882
ORF1ab/nsp12814S814del2S5206del2delTCt--t210.515880-15882
ORF1ab/nsp12814S814RS5206RnonsynTCTAGG11115880-15882
ORF1ab/nsp12814S814LS5206LnonsynTCtCTt11115880-15882

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12814S814StcTtcG1472714935All0.002817
ORF1ab/nsp12814S814StcTtcC19814935All0.000038
ORF1ab/nsp12814S814StcTtcA1014935All0.000002
ORF1ab/nsp12814S814StcTtcG86638663AY.7.10.976333
ORF1ab/nsp12814S814StcTtcG38193819AY.70.74853
ORF1ab/nsp12814S814StcTtcG16301630AY.7.20.911633
ORF1ab/nsp12814S814StcTtcG158190AY.1030.000981
ORF1ab/nsp12814S814StcTtcC32190AY.1030.000199
ORF1ab/nsp12814S814StcTtcG133133AY.420.005351
ORF1ab/nsp12814S814StcTtcG68103B.1.617.20.000256
ORF1ab/nsp12814S814StcTtcC35103B.1.617.20.000132
ORF1ab/nsp12814S814StcTtcG4050AY.40.000062
ORF1ab/nsp12814S814StcTtcC950AY.40.000014
ORF1ab/nsp12814S814StcTtcA150AY.40.000002
ORF1ab/nsp12814S814StcTtcG3737AY.60.001522
ORF1ab/nsp12814S814YtCttAt2626All0.000005
ORF1ab/nsp12814S814StcTtcC1322B.1.1.70.000012
ORF1ab/nsp12814S814StcTtcG922B.1.1.70.000008
ORF1ab/nsp12814S814StcTtcC1118AY.430.000049
ORF1ab/nsp12814S814StcTtcG718AY.430.000031
ORF1ab/nsp12814S814FtCttTt1717All0.000003
ORF1ab/nsp12814S814StcTtcG1717AY.110.022758
ORF1ab/nsp12814S814StcTtcG1616B.1.5610.006352
ORF1ab/nsp12814S814PTctCct1313All0.000002
ORF1ab/nsp12814S814StcTtcC1313B.1.20.000114
ORF1ab/nsp12814S814StcTtcG1212AY.880.01061
ORF1ab/nsp12814S814StcTtcC1212B.1.3510.000357
ORF1ab/nsp12814S814StcTtcG1011AY.50.000206
ORF1ab/nsp12814S814StcTtcC111AY.50.000021
ORF1ab/nsp12814S814StcTtcG1010AY.1130.001424
ORF1ab/nsp12814S814YtCttAt1010B.10.000092
ORF1ab/nsp12814S814StcTtcC89AY.1190.000282
ORF1ab/nsp12814S814StcTtcG19AY.1190.000035
ORF1ab/nsp12814S814StcTtcG99AY.1210.001218
ORF1ab/nsp12814S814StcTtcC59AY.750.00028
ORF1ab/nsp12814S814StcTtcG49AY.750.000224
ORF1ab/nsp12814S814StcTtcG78AY.840.003062
ORF1ab/nsp12814S814StcTtcA18AY.840.000437
ORF1ab/nsp12814S814delTCT---66All0.000001
ORF1ab/nsp12814S814ATctGct66All0.000001
ORF1ab/nsp12814S814StcTtcG66AY.1110.001099
ORF1ab/nsp12814S814StcTtcC66AY.200.000233
ORF1ab/nsp12814S814StcTtcC46AY.440.000024
ORF1ab/nsp12814S814StcTtcG16AY.440.000006
ORF1ab/nsp12814S814StcTtcA16AY.440.000006
ORF1ab/nsp12814S814StcTtcG56AY.450.000608
ORF1ab/nsp12814S814StcTtcC16AY.450.000122
ORF1ab/nsp12814S814StcTtcC35AY.1000.000138
ORF1ab/nsp12814S814StcTtcG25AY.1000.000092
ORF1ab/nsp12814S814StcTtcC55P.10.000079
ORF1ab/nsp12814S814StcTtcG24AY.1170.000169
ORF1ab/nsp12814S814StcTtcC24AY.1170.000169
ORF1ab/nsp12814S814StcTtcC44AY.250.000024
ORF1ab/nsp12814S814StcTtcG44AY.4.30.003367
ORF1ab/nsp12814S814StcTtcC34AY.4.50.000322
ORF1ab/nsp12814S814StcTtcG14AY.4.50.000107
ORF1ab/nsp12814S814StcTtcG44AY.5.30.00135
ORF1ab/nsp12814S814StcTtcG44AY.580.00363
ORF1ab/nsp12814S814StcTtcC34B.10.000027
ORF1ab/nsp12814S814StcTtcG14B.10.000009
ORF1ab/nsp12814S814StcTtcG44B.1.1600.000125
ORF1ab/nsp12814S814FtCttTt44B.1.1770.000053
ORF1ab/nsp12814S814del1Tct-ct23All0
ORF1ab/nsp12814S814del1tCtt-t13All0
ORF1ab/nsp12814S814StcTtcG33AY.1060.001005
ORF1ab/nsp12814S814StcTtcA23AY.30.00002
ORF1ab/nsp12814S814StcTtcG13AY.30.00001
ORF1ab/nsp12814S814StcTtcG23AY.390.000049
ORF1ab/nsp12814S814StcTtcC13AY.390.000025
ORF1ab/nsp12814S814StcTtcG33AY.39.1.10.002174
ORF1ab/nsp12814S814ATctGct33AY.40.000005
ORF1ab/nsp12814S814YtCttAt33AY.430.000013
ORF1ab/nsp12814S814StcTtcG33AY.980.000237
ORF1ab/nsp12814S814FtCttTt33B.10.000027
ORF1ab/nsp12814S814StcTtcC23B.1.10.000036
ORF1ab/nsp12814S814StcTtcG13B.1.10.000018
ORF1ab/nsp12814S814FtCttTt33B.1.1.70.000003
ORF1ab/nsp12814S814StcTtcC23B.1.1770.000026
ORF1ab/nsp12814S814StcTtcG13B.1.1770.000013
ORF1ab/nsp12814S814StcTtcC23B.1.5250.000226
ORF1ab/nsp12814S814StcTtcA13B.1.5250.000113
ORF1ab/nsp12814S814StcTtcG23B.1.621.10.001012
ORF1ab/nsp12814S814StcTtcC13B.1.621.10.000506
ORF1ab/nsp12814S814TTctAct22All0
ORF1ab/nsp12814S814CtCttGt22All0
ORF1ab/nsp12814S814del2TCt--t12All0
ORF1ab/nsp12814S814del2tCTt--12All0
ORF1ab/nsp12814S814StcTtcG12AY.1020.000027
ORF1ab/nsp12814S814StcTtcC12AY.1020.000027
ORF1ab/nsp12814S814StcTtcG22AY.1160.000574
ORF1ab/nsp12814S814StcTtcG22AY.120.000632
ORF1ab/nsp12814S814StcTtcG22AY.380.000999
ORF1ab/nsp12814S814StcTtcG22AY.46.60.000144
ORF1ab/nsp12814S814StcTtcG22AY.560.00321
ORF1ab/nsp12814S814StcTtcG22AY.640.00119
ORF1ab/nsp12814S814StcTtcG22AY.99.10.003106
ORF1ab/nsp12814S814PTctCct22B.10.000018
ORF1ab/nsp12814S814YtCttAt22B.1.10.000036
ORF1ab/nsp12814S814delTCT---22B.1.1.70.000002
ORF1ab/nsp12814S814StcTtcC22B.1.4090.001563
ORF1ab/nsp12814S814StcTtcC22B.1.4290.000047
ORF1ab/nsp12814S814delTCT---22B.1.617.20.000008
ORF1ab/nsp12814S814del1tCtt-t11A0.000387
ORF1ab/nsp12814S814YtCttAt11A0.000387
ORF1ab/nsp12814S814StcTtcC11A.2.50.000499
ORF1ab/nsp12814S814RTCTAGG11All0
ORF1ab/nsp12814S814LTCtCTt11All0
ORF1ab/nsp12814S814ATctGct11AY.1030.000006
ORF1ab/nsp12814S814FtCttTt11AY.116.10.000311
ORF1ab/nsp12814S814PTctCct11AY.120.10.000321
ORF1ab/nsp12814S814StcTtcC11AY.16.10.00047
ORF1ab/nsp12814S814StcTtcC11AY.260.000028
ORF1ab/nsp12814S814StcTtcC11AY.3.10.000085
ORF1ab/nsp12814S814YtCttAt11AY.330.000067
ORF1ab/nsp12814S814StcTtcC11AY.340.000097
ORF1ab/nsp12814S814YtCttAt11AY.40.000002
ORF1ab/nsp12814S814ATctGct11AY.440.000006
ORF1ab/nsp12814S814PTctCct11AY.440.000006
ORF1ab/nsp12814S814YtCttAt11AY.440.000006
ORF1ab/nsp12814S814StcTtcG11AY.460.000104
ORF1ab/nsp12814S814StcTtcG11AY.46.10.001027
ORF1ab/nsp12814S814StcTtcA11AY.46.40.000165
ORF1ab/nsp12814S814YtCttAt11AY.520.000814
ORF1ab/nsp12814S814StcTtcC11AY.610.000105
ORF1ab/nsp12814S814StcTtcG11AY.690.000187
ORF1ab/nsp12814S814StcTtcG11AY.730.000665
ORF1ab/nsp12814S814delTCT---11AY.75.10.00018
ORF1ab/nsp12814S814PTctCct11AY.790.001211
ORF1ab/nsp12814S814StcTtcG11AY.860.00083
ORF1ab/nsp12814S814StcTtcG11AY.890.004902
ORF1ab/nsp12814S814StcTtcG11AY.900.000684
ORF1ab/nsp12814S814YtCttAt11AY.920.000287
ORF1ab/nsp12814S814StcTtcG11AY.950.000761
ORF1ab/nsp12814S814StcTtcG11AY.98.10.000048
ORF1ab/nsp12814S814StcTtcG11AY.990.001049
ORF1ab/nsp12814S814PTctCct11B0.000128
ORF1ab/nsp12814S814FtCttTt11B0.000128
ORF1ab/nsp12814S814YtCttAt11B0.000128
ORF1ab/nsp12814S814TTctAct11B.10.000009
ORF1ab/nsp12814S814del2tCTt--11B.1.10.000018
ORF1ab/nsp12814S814RTCTAGG11B.1.10.000018
ORF1ab/nsp12814S814CtCttGt11B.1.10.000018
ORF1ab/nsp12814S814StcTtcA11B.1.1.1610.003534
ORF1ab/nsp12814S814StcTtcA11B.1.1.280.000311
ORF1ab/nsp12814S814StcTtcC11B.1.1.5190.00004
ORF1ab/nsp12814S814FtCttTt11B.1.1.5190.00004
ORF1ab/nsp12814S814PTctCct11B.1.1.5190.00004
ORF1ab/nsp12814S814PTctCct11B.1.1.70.000001
ORF1ab/nsp12814S814CtCttGt11B.1.1.70.000001
ORF1ab/nsp12814S814YtCttAt11B.1.1.70.000001
ORF1ab/nsp12814S814StcTtcC11B.1.160.150.00495
ORF1ab/nsp12814S814ATctGct11B.1.1770.000013
ORF1ab/nsp12814S814PTctCct11B.1.1770.000013
ORF1ab/nsp12814S814StcTtcC11B.1.177.440.000519
ORF1ab/nsp12814S814StcTtcG11B.1.177.450.000381
ORF1ab/nsp12814S814StcTtcA11B.1.177.560.000668
ORF1ab/nsp12814S814del1Tct-ct11B.1.177.690.001484
ORF1ab/nsp12814S814StcTtcC11B.1.177.80.000752
ORF1ab/nsp12814S814delTCT---11B.1.177.830.001481
ORF1ab/nsp12814S814PTctCct11B.1.20.000009
ORF1ab/nsp12814S814YtCttAt11B.1.3010.005917
ORF1ab/nsp12814S814LTCtCTt11B.1.3330.010526
ORF1ab/nsp12814S814FtCttTt11B.1.3550.011111
ORF1ab/nsp12814S814PTctCct11B.1.360.000146
ORF1ab/nsp12814S814FtCttTt11B.1.36.160.001425
ORF1ab/nsp12814S814StcTtcC11B.1.36.270.000763
ORF1ab/nsp12814S814YtCttAt11B.1.4160.001269
ORF1ab/nsp12814S814PTctCct11B.1.4270.00005
ORF1ab/nsp12814S814StcTtcC11B.1.4270.00005
ORF1ab/nsp12814S814StcTtcG11B.1.5960.000087
ORF1ab/nsp12814S814TTctAct11B.1.5960.000087
ORF1ab/nsp12814S814YtCttAt11B.1.6230.000536
ORF1ab/nsp12814S814del2TCt--t11C.360.000911
ORF1ab/nsp12814S814FtCttTt11D.20.000075
ORF1ab/nsp12814S814PTctCct11D.20.000075
ORF1ab/nsp12814S814FtCttTt11P.10.000016
ORF1ab/nsp12814S814StcTtcC11P.1.160.000374
ORF1ab/nsp12814S814del1Tct-ct11Q.10.000126
ORF1ab/nsp12814S814StcTtcC11Q.30.000145
ORF1ab/nsp12814S814StcTtcC11Q.40.000455