CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 806 | T806I | T5198I | nonsyn | aCt | aTt | 4472 | 4472 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806S | T5198S | nonsyn | aCt | aGt | 190 | 185 | 0.973684 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806S | T5198S | nonsyn | Act | Tct | 190 | 5 | 0.0263158 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806T | T5198T | syn | acT | acC | 181 | 155 | 0.856354 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806T | T5198T | syn | acT | acA | 181 | 25 | 0.138122 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806T | T5198T | syn | acT | acG | 181 | 1 | 0.00552486 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806A | T5198A | nonsyn | Act | Gct | 124 | 120 | 0.967742 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806A | T5198A | nonsyn | AcT | GcA | 124 | 4 | 0.0322581 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806N | T5198N | nonsyn | aCt | aAt | 86 | 83 | 0.965116 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806N | T5198N | nonsyn | aCT | aAC | 86 | 3 | 0.0348837 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806del | T5198del | del | ACT | --- | 10 | 10 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806D | T5198D | nonsyn | ACT | GAC | 4 | 3 | 0.75 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806D | T5198D | nonsyn | ACt | GAt | 4 | 1 | 0.25 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806G | T5198G | nonsyn | ACt | GGt | 3 | 3 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806L | T5198L | nonsyn | ACT | CTA | 1 | 1 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806P | T5198P | nonsyn | Act | Cct | 1 | 1 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806del1 | T5198del1 | del | aCt | a-t | 1 | 1 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806del2 | T5198del2 | del | aCT | a-- | 1 | 1 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806V | T5198V | nonsyn | ACt | GTt | 1 | 1 | 1 | 15856-15858 |
ORF1ab/nsp12 | 806 | T806M | T5198M | nonsyn | aCT | aTG | 1 | 1 | 1 | 15856-15858 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4472 | 4472 | All | 0.000855 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 784 | 784 | B.1.1.7 | 0.000702 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 364 | 364 | AY.4 | 0.000567 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 300 | 300 | B.1.2 | 0.002642 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 262 | 262 | B.1.617.2 | 0.000987 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 209 | 209 | AY.25 | 0.001257 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 185 | 190 | All | 0.000035 |
ORF1ab/nsp12 | 806 | T806S | Act | Tct | 5 | 190 | All | 0.000001 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 155 | 181 | All | 0.00003 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 25 | 181 | All | 0.000005 |
ORF1ab/nsp12 | 806 | T806T | acT | acG | 1 | 181 | All | 0 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 177 | 177 | AY.44 | 0.001077 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 155 | 155 | AY.33 | 0.010351 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 146 | 146 | AY.88 | 0.129089 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 120 | 124 | All | 0.000023 |
ORF1ab/nsp12 | 806 | T806A | AcT | GcA | 4 | 124 | All | 0.000001 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 124 | 124 | B.1.1.222 | 0.025296 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 110 | 110 | AY.103 | 0.000683 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 106 | 106 | B.1 | 0.000971 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 100 | 100 | B.1.1 | 0.001814 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 92 | 92 | B.1.369 | 0.026241 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 83 | 86 | All | 0.000016 |
ORF1ab/nsp12 | 806 | T806N | aCT | aAC | 3 | 86 | All | 0.000001 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 81 | 81 | AY.5.3 | 0.027328 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 77 | 77 | AY.20 | 0.002993 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 73 | 73 | AY.3 | 0.000726 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 66 | 66 | AY.119 | 0.00233 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 61 | 61 | AY.43 | 0.00027 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 48 | 48 | B.1.177 | 0.000632 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 45 | 45 | B.1.177.15 | 0.028391 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 44 | 44 | B.1.527 | 0.162963 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 43 | 43 | B.1.177.4 | 0.009076 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 41 | 41 | AY.4.2 | 0.000889 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 39 | 39 | AY.98 | 0.003081 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 36 | 36 | AY.5 | 0.000743 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 35 | 35 | B.1.1.519 | 0.00139 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 34 | 34 | B.1.1.346 | 1 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 34 | 34 | B.1.637 | 0.002484 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 34 | 34 | P.1 | 0.000536 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 28 | 32 | AY.4 | 0.000044 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 4 | 32 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 32 | 32 | P.1.10 | 0.008623 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 31 | 31 | B.1.568 | 0.034444 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 26 | 26 | AY.47 | 0.000809 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 21 | 21 | AY.29 | 0.000331 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 21 | 21 | B.1.177.44 | 0.010898 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 20 | 20 | B.1.177.73 | 0.011325 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 18 | 18 | B.1.110.3 | 0.012931 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 17 | 17 | AY.86 | 0.014108 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 17 | 17 | B.1.160.8 | 0.021907 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 16 | 17 | B.1.617.2 | 0.00006 |
ORF1ab/nsp12 | 806 | T806S | Act | Tct | 1 | 17 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 16 | 16 | B.1.1.28 | 0.00498 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 14 | 14 | AY.77 | 0.015784 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 14 | 14 | B.1.582 | 0.006869 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 12 | 12 | AY.6 | 0.000494 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 12 | 12 | B.1.1.306 | 0.005261 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 12 | 12 | B.1.320 | 0.014944 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 10 | 12 | B.1.617.2 | 0.000038 |
ORF1ab/nsp12 | 806 | T806A | AcT | GcA | 2 | 12 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 12 | 12 | B.1.621 | 0.001062 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 11 | 11 | AY.3.1 | 0.000938 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 10 | 10 | All | 0.000002 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 9 | 9 | AY.69 | 0.00168 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 8 | 8 | A | 0.003096 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 8 | 8 | B.1.232 | 0.004299 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 8 | 8 | B.1.577 | 0.005498 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 8 | 8 | C.16 | 0.008484 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 7 | 7 | B.1.1.253 | 0.017544 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 7 | 7 | B.6.8 | 0.057851 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | B.1.1.39 | 0.003058 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | B.1.349 | 0.004289 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 4 | 5 | AY.120.1 | 0.001284 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 5 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 4 | 5 | AY.44 | 0.000024 |
ORF1ab/nsp12 | 806 | T806A | AcT | GcA | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | B.1.564 | 0.002129 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp12 | 806 | T806D | ACT | GAC | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 806 | T806D | ACt | GAt | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | AY.23.1 | 0.001669 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.1.207 | 0.004728 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.1.232 | 0.00726 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.1.277 | 0.003035 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.1.302 | 0.008299 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.35 | 0.033898 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | L.1 | 0.007619 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp12 | 806 | T806G | ACt | GGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 806 | T806G | ACt | GGt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.36.31 | 0.005254 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | B.1.595.1 | 0.017544 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 806 | T806T | acT | acG | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp12 | 806 | T806N | aCT | aAC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.1.203 | 0.033898 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 806 | T806S | Act | Tct | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | C.4 | 0.02 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | P.1.9 | 0.009615 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp12 | 806 | T806P | Act | Cct | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 806 | T806L | ACT | CTA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 806 | T806V | ACt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 806 | T806M | aCT | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 806 | T806del2 | aCT | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 806 | T806del1 | aCt | a-t | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 806 | T806P | Act | Cct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 806 | T806S | Act | Tct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 806 | T806D | ACt | GAt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp12 | 806 | T806S | Act | Tct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 806 | T806L | ACT | CTA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp12 | 806 | T806D | ACT | GAC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.399 | 0.090909 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.1.77 | 0.041667 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.180 | 0.05 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.187 | 0.033333 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 806 | T806S | Act | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.258.6 | 0.019608 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 806 | T806A | AcT | GcA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.573 | 0.006098 |
ORF1ab/nsp12 | 806 | T806V | ACt | GTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 806 | T806del1 | aCt | a-t | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 806 | T806T | acT | acC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 806 | T806M | aCT | aTG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 806 | T806D | ACT | GAC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 806 | T806del2 | aCT | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 806 | T806D | ACT | GAC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 806 | T806N | aCt | aAt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 806 | T806T | acT | acA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 806 | T806A | Act | Gct | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 806 | T806I | aCt | aTt | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp12 | 806 | T806del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 806 | T806N | aCT | aAC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp12 | 806 | T806S | aCt | aGt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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