CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 803 | T803T | T5195T | syn | acT | acC | 7175 | 6941 | 0.967387 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803T | T5195T | syn | acT | acA | 7175 | 166 | 0.0231359 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803T | T5195T | syn | acT | acG | 7175 | 68 | 0.00947735 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803I | T5195I | nonsyn | aCt | aTt | 5468 | 5468 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803N | T5195N | nonsyn | aCt | aAt | 347 | 345 | 0.994236 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803N | T5195N | nonsyn | aCT | aAC | 347 | 2 | 0.00576369 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803A | T5195A | nonsyn | Act | Gct | 204 | 201 | 0.985294 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803A | T5195A | nonsyn | AcT | GcA | 204 | 2 | 0.00980392 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803A | T5195A | nonsyn | AcT | GcC | 204 | 1 | 0.00490196 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803P | T5195P | nonsyn | Act | Cct | 55 | 55 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803S | T5195S | nonsyn | Act | Tct | 41 | 34 | 0.829268 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803S | T5195S | nonsyn | aCt | aGt | 41 | 6 | 0.146341 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803S | T5195S | nonsyn | AcT | TcC | 41 | 1 | 0.0243902 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803del | T5195del | del | ACT | --- | 8 | 8 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803D | T5195D | nonsyn | ACt | GAt | 4 | 3 | 0.75 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803D | T5195D | nonsyn | ACT | GAC | 4 | 1 | 0.25 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803E | T5195E | nonsyn | ACT | GAA | 2 | 2 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803K | T5195K | nonsyn | aCT | aAA | 2 | 2 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803Y | T5195Y | nonsyn | ACT | TAC | 2 | 1 | 0.5 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803Y | T5195Y | nonsyn | ACt | TAt | 2 | 1 | 0.5 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803V | T5195V | nonsyn | ACt | GTt | 1 | 1 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803G | T5195G | nonsyn | ACt | GGt | 1 | 1 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803H | T5195H | nonsyn | ACt | CAt | 1 | 1 | 1 | 15847-15849 |
ORF1ab/nsp12 | 803 | T803del1 | T5195del1 | del | acT | ac- | 1 | 1 | 1 | 15847-15849 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 6941 | 7175 | All | 0.001328 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 166 | 7175 | All | 0.000032 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 68 | 7175 | All | 0.000013 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5468 | 5468 | All | 0.001046 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 5058 | 5088 | AY.4 | 0.007872 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 29 | 5088 | AY.4 | 0.000045 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 5088 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1513 | 1532 | B.1.1.7 | 0.001354 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 14 | 1532 | B.1.1.7 | 0.000013 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 5 | 1532 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1091 | 1091 | AY.4 | 0.001698 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1049 | 1049 | AY.25 | 0.00631 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 699 | 699 | B.1.1.433 | 0.995726 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 345 | 347 | All | 0.000066 |
ORF1ab/nsp12 | 803 | T803N | aCT | aAC | 2 | 347 | All | 0 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 339 | 339 | B.1.1.7 | 0.000303 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 311 | 311 | B.1.1.253 | 0.779449 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 201 | 204 | All | 0.000038 |
ORF1ab/nsp12 | 803 | T803A | AcT | GcA | 2 | 204 | All | 0 |
ORF1ab/nsp12 | 803 | T803A | AcT | GcC | 1 | 204 | All | 0 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 204 | 204 | B.1.36.35 | 0.53125 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 172 | 172 | AY.103 | 0.001068 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 166 | 166 | B.1.617.2 | 0.000625 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 120 | 120 | AY.43 | 0.000532 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 80 | 103 | AY.25 | 0.000481 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 23 | 103 | AY.25 | 0.000138 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 97 | 97 | AY.36 | 0.014377 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 94 | 94 | B.1.1.236 | 0.648276 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 87 | 90 | B.1.617.2 | 0.000328 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 2 | 90 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 1 | 90 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 83 | 83 | B.1.1 | 0.001506 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 76 | 76 | B.1.2 | 0.000669 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 70 | 70 | AY.29.1 | 0.015436 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 60 | 60 | AY.39 | 0.001483 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 46 | 59 | AY.43 | 0.000204 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 9 | 59 | AY.43 | 0.00004 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 4 | 59 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 59 | 59 | B.1.177 | 0.000777 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 59 | 59 | B.1.480 | 0.146766 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 55 | 55 | All | 0.000011 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 50 | 50 | AY.99.2 | 0.004608 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 50 | 50 | B.1.1.7 | 0.000045 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 48 | 48 | AY.3 | 0.000477 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 48 | 48 | AY.44 | 0.000292 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 47 | 48 | B.1.177 | 0.000619 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 48 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 44 | 44 | AY.102 | 0.001167 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 43 | 43 | B.1 | 0.000394 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 34 | 41 | All | 0.000007 |
ORF1ab/nsp12 | 803 | T803S | aCt | aGt | 6 | 41 | All | 0.000001 |
ORF1ab/nsp12 | 803 | T803S | AcT | TcC | 1 | 41 | All | 0 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 23 | 34 | AY.103 | 0.000143 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 9 | 34 | AY.103 | 0.000056 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 2 | 34 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 31 | 31 | AY.68 | 0.008486 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 25 | 25 | B.1.526 | 0.000588 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 24 | 24 | AY.29 | 0.000379 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 24 | 24 | AY.4.2 | 0.000521 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 17 | 22 | B.1.2 | 0.00015 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 4 | 22 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 22 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 21 | 22 | B.1.526 | 0.000494 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 22 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 20 | 20 | AY.70 | 0.00417 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 19 | 19 | B.1.470 | 0.026685 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 18 | 18 | B.1.243 | 0.001253 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 17 | 17 | AY.9.1 | 0.001423 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 16 | 16 | AY.20 | 0.000622 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 16 | 16 | AY.74 | 0.00185 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 13 | 13 | Q.3 | 0.001885 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 5 | 12 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 5 | 12 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 2 | 12 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 12 | 12 | B.1.1.317 | 0.00494 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 12 | 12 | P.2 | 0.00224 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 11 | 11 | B.1.1.318 | 0.003319 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 803 | T803del | ACT | --- | 8 | 8 | All | 0.000002 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 8 | 8 | AY.57 | 0.005249 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 8 | 8 | AY.65 | 0.004264 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 6 | 8 | B.1 | 0.000055 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 2 | 8 | B.1 | 0.000018 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 6 | 7 | AY.102 | 0.000159 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 7 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 7 | 7 | B.1.411 | 0.025926 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 3 | 6 | 0.166667 | |
ORF1ab/nsp12 | 803 | T803A | AcT | GcA | 2 | 6 | 0.111111 | |
ORF1ab/nsp12 | 803 | T803A | AcT | GcC | 1 | 6 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | A.2.5.3 | 0.061856 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 5 | 6 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 1 | 6 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 6 | 6 | B.1.177.44 | 0.003114 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 6 | 6 | B.1.381 | 0.046875 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5 | 5 | A.28 | 0.013228 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5 | 5 | AY.1 | 0.001979 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5 | 5 | AY.32 | 0.002662 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5 | 5 | AY.94 | 0.002213 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 5 | 5 | B.1.177.82 | 0.002387 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 3 | 4 | 0.166667 | |
ORF1ab/nsp12 | 803 | T803D | ACt | GAt | 3 | 4 | 0.166667 | |
ORF1ab/nsp12 | 803 | T803D | ACT | GAC | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803N | aCT | aAC | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp12 | 803 | T803D | ACt | GAt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 803 | T803D | ACT | GAC | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | B | 0.000511 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp12 | 803 | T803S | aCt | aGt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | B.1.177.9 | 0.005326 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 4 | 4 | B.1.199 | 0.016529 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 4 | 4 | C.14 | 0.017316 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 2 | 3 | 0.111111 | |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | B.1.1.159 | 0.014019 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 3 | 3 | B.1.1.464 | 0.004418 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 803 | T803del | ACT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 2 | 3 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 803 | T803N | aCT | aAC | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 803 | T803E | ACT | GAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 803 | T803K | aCT | aAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 803 | T803Y | ACt | TAt | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803S | AcT | TcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803Y | ACT | TAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp12 | 803 | T803K | aCT | aAA | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 803 | T803E | ACT | GAA | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 803 | T803Y | ACT | TAC | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 803 | T803Y | ACt | TAt | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | B.1.1.280 | 0.006173 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.355 | 0.030769 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AA.8 | 0.022222 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 803 | T803V | ACt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 803 | T803G | ACt | GGt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 803 | T803H | ACt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 803 | T803del1 | acT | ac- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 803 | T803S | aCt | aGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 803 | T803del | ACT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 803 | T803del1 | acT | ac- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 803 | T803S | aCt | aGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 803 | T803H | ACt | CAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 803 | T803V | ACt | GTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 803 | T803T | acT | acG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 803 | T803del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 803 | T803G | ACt | GGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp12 | 803 | T803N | aCt | aAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 803 | T803del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp12 | 803 | T803S | Act | Tct | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 803 | T803del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.622 | 0.012987 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 803 | T803P | Act | Cct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 803 | T803T | acT | acA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 803 | T803A | Act | Gct | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp12 | 803 | T803T | acT | acC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 803 | T803del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 803 | T803I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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