CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 801

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12801T801IT5193InonsynaCtaTt107110700.99906615841-15843
ORF1ab/nsp12801T801IT5193InonsynaCTaTC107110.00093370715841-15843
ORF1ab/nsp12801T801TT5193TsynacTacC4242750.64858515841-15843
ORF1ab/nsp12801T801TT5193TsynacTacA4241180.27830215841-15843
ORF1ab/nsp12801T801TT5193TsynacTacG424310.073113215841-15843
ORF1ab/nsp12801T801AT5193AnonsynActGct1651630.98787915841-15843
ORF1ab/nsp12801T801AT5193AnonsynAcTGcC16510.0060606115841-15843
ORF1ab/nsp12801T801AT5193AnonsynAcTGcA16510.0060606115841-15843
ORF1ab/nsp12801T801NT5193NnonsynaCtaAt1561550.9935915841-15843
ORF1ab/nsp12801T801NT5193NnonsynaCTaAC15610.0064102615841-15843
ORF1ab/nsp12801T801ST5193SnonsynActTct23110.47826115841-15843
ORF1ab/nsp12801T801ST5193SnonsynaCtaGt23100.43478315841-15843
ORF1ab/nsp12801T801ST5193SnonsynAcTTcA2310.043478315841-15843
ORF1ab/nsp12801T801ST5193SnonsynAcTTcC2310.043478315841-15843
ORF1ab/nsp12801T801delT5193deldelACT---88115841-15843
ORF1ab/nsp12801T801DT5193DnonsynACtGAt320.66666715841-15843
ORF1ab/nsp12801T801DT5193DnonsynACTGAC310.33333315841-15843
ORF1ab/nsp12801T801del1T5193del1delaCta-t22115841-15843
ORF1ab/nsp12801T801YT5193YnonsynACtTAt22115841-15843
ORF1ab/nsp12801T801KT5193KnonsynaCTaAA22115841-15843
ORF1ab/nsp12801T801PT5193PnonsynActCct22115841-15843
ORF1ab/nsp12801T801FT5193FnonsynACtTTt210.515841-15843
ORF1ab/nsp12801T801FT5193FnonsynACTTTC210.515841-15843
ORF1ab/nsp12801T801RT5193RnonsynaCTaGG11115841-15843
ORF1ab/nsp12801T801XT5193XnonsynACTTAA11115841-15843
ORF1ab/nsp12801T801ET5193EnonsynACTGAA11115841-15843
ORF1ab/nsp12801T801VT5193VnonsynACtGTt11115841-15843

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12801T801IaCtaTt10701071All0.000205
ORF1ab/nsp12801T801IaCTaTC11071All0
ORF1ab/nsp12801T801IaCtaTt467467AY.40.000727
ORF1ab/nsp12801T801TacTacC275424All0.000053
ORF1ab/nsp12801T801TacTacA118424All0.000023
ORF1ab/nsp12801T801TacTacG31424All0.000006
ORF1ab/nsp12801T801TacTacC201207AY.40.000313
ORF1ab/nsp12801T801TacTacA6207AY.40.000009
ORF1ab/nsp12801T801AActGct163165All0.000031
ORF1ab/nsp12801T801AAcTGcC1165All0
ORF1ab/nsp12801T801AAcTGcA1165All0
ORF1ab/nsp12801T801NaCtaAt155156All0.00003
ORF1ab/nsp12801T801NaCTaAC1156All0
ORF1ab/nsp12801T801NaCtaAt115115B.1.1180.771812
ORF1ab/nsp12801T801IaCtaTt9090B.1.617.20.000339
ORF1ab/nsp12801T801IaCtaTt8181B.1.1.70.000073
ORF1ab/nsp12801T801AActGct7272B.1.1.70.000064
ORF1ab/nsp12801T801TacTacA7070B.1.5260.001645
ORF1ab/nsp12801T801IaCtaTt4343AY.1030.000267
ORF1ab/nsp12801T801IaCtaTt3434B.1.20.000299
ORF1ab/nsp12801T801IaCtaTt3333AY.250.000198
ORF1ab/nsp12801T801IaCtaTt2727B.1.3990.052224
ORF1ab/nsp12801T801IaCtaTt2626AY.30.000259
ORF1ab/nsp12801T801IaCtaTt2424AY.1000.001104
ORF1ab/nsp12801T801SActTct1123All0.000002
ORF1ab/nsp12801T801SaCtaGt1023All0.000002
ORF1ab/nsp12801T801SAcTTcC123All0
ORF1ab/nsp12801T801SAcTTcA123All0
ORF1ab/nsp12801T801TacTacA1515AY.540.00143
ORF1ab/nsp12801T801TacTacC715B.1.617.20.000026
ORF1ab/nsp12801T801TacTacG515B.1.617.20.000019
ORF1ab/nsp12801T801TacTacA315B.1.617.20.000011
ORF1ab/nsp12801T801IaCtaTt1313AY.1020.000345
ORF1ab/nsp12801T801IaCtaTt1313AY.430.000058
ORF1ab/nsp12801T801IaCtaTt1313AY.980.001027
ORF1ab/nsp12801T801AActGct1313B.1.4290.000306
ORF1ab/nsp12801T801IaCtaTt1212B.1.6210.001062
ORF1ab/nsp12801T801IaCtaTt1111AY.1190.000388
ORF1ab/nsp12801T801IaCtaTt1111AY.340.001067
ORF1ab/nsp12801T801AActGct1111B.1.1.2140.00061
ORF1ab/nsp12801T801AActGct1010AY.1000.00046
ORF1ab/nsp12801T801IaCtaTt1010AY.260.000283
ORF1ab/nsp12801T801IaCtaTt1010AY.610.001048
ORF1ab/nsp12801T801TacTacC1010B.1.1.5190.000397
ORF1ab/nsp12801T801AActGct1010B.1.617.20.000038
ORF1ab/nsp12801T801TacTacC99AY.50.000186
ORF1ab/nsp12801T801IaCtaTt99AY.99.20.000829
ORF1ab/nsp12801T801TacTacC59B.1.1.70.000004
ORF1ab/nsp12801T801TacTacG49B.1.1.70.000004
ORF1ab/nsp12801T801delACT---88All0.000002
ORF1ab/nsp12801T801IaCtaTt88AY.1200.000297
ORF1ab/nsp12801T801AActGct88AY.290.000126
ORF1ab/nsp12801T801IaCtaTt88B.1.177.570.002248
ORF1ab/nsp12801T801IaCtaTt88B.1.2580.000532
ORF1ab/nsp12801T801AActGct77AY.30.00007
ORF1ab/nsp12801T801SaCtaGt57AY.40.000008
ORF1ab/nsp12801T801SActTct27AY.40.000003
ORF1ab/nsp12801T801IaCtaTt77B.1.4970.002203
ORF1ab/nsp12801T801TacTacG46AY.30.00004
ORF1ab/nsp12801T801TacTacA26AY.30.00002
ORF1ab/nsp12801T801IaCtaTt66AY.470.000187
ORF1ab/nsp12801T801IaCtaTt66B.10.000055
ORF1ab/nsp12801T801SActTct56B.1.1.70.000004
ORF1ab/nsp12801T801SaCtaGt16B.1.1.70.000001
ORF1ab/nsp12801T801TacTacC66B.1.2580.000399
ORF1ab/nsp12801T801TacTacA66B.1.5680.006667
ORF1ab/nsp12801T801IaCtaTt66B.40.013245
ORF1ab/nsp12801T801TacTacC66P.10.000095
ORF1ab/nsp12801T801SActTct350.166667
ORF1ab/nsp12801T801SAcTTcC150.055556
ORF1ab/nsp12801T801SAcTTcA150.055556
ORF1ab/nsp12801T801IaCtaTt55AY.390.000124
ORF1ab/nsp12801T801IaCtaTt55AY.39.10.000198
ORF1ab/nsp12801T801AActGct55AY.40.000008
ORF1ab/nsp12801T801NaCtaAt55B.1.1.70.000004
ORF1ab/nsp12801T801TacTacG45B.1.4270.000202
ORF1ab/nsp12801T801TacTacA15B.1.4270.00005
ORF1ab/nsp12801T801NaCtaAt55B.1.5950.001305
ORF1ab/nsp12801T801NaCtaAt340.166667
ORF1ab/nsp12801T801AActGct240.111111
ORF1ab/nsp12801T801NaCTaAC140.055556
ORF1ab/nsp12801T801AAcTGcA140.055556
ORF1ab/nsp12801T801AAcTGcC140.055556
ORF1ab/nsp12801T801IaCtaTt44AY.440.000024
ORF1ab/nsp12801T801IaCtaTt44AY.50.000083
ORF1ab/nsp12801T801IaCtaTt44AY.60.000165
ORF1ab/nsp12801T801IaCtaTt44B.1.10.000073
ORF1ab/nsp12801T801TacTacG44B.1.1.2140.000222
ORF1ab/nsp12801T801AActGct44B.1.2220.006768
ORF1ab/nsp12801T801IaCtaTt44C.370.000464
ORF1ab/nsp12801T801TacTacC230.111111
ORF1ab/nsp12801T801DACtGAt230.111111
ORF1ab/nsp12801T801DACTGAC130.055556
ORF1ab/nsp12801T801TacTacA130.055556
ORF1ab/nsp12801T801DACtGAt23All0
ORF1ab/nsp12801T801DACTGAC13All0
ORF1ab/nsp12801T801TacTacC33AY.10.001187
ORF1ab/nsp12801T801IaCtaTt33AY.140.000264
ORF1ab/nsp12801T801AActGct33AY.340.000291
ORF1ab/nsp12801T801AActGct33AY.440.000018
ORF1ab/nsp12801T801TacTacC23AY.440.000012
ORF1ab/nsp12801T801TacTacG13AY.440.000006
ORF1ab/nsp12801T801TacTacC33AY.46.60.000217
ORF1ab/nsp12801T801IaCtaTt33B.1.1.3790.09375
ORF1ab/nsp12801T801TacTacC23B.1.20.000018
ORF1ab/nsp12801T801TacTacG13B.1.20.000009
ORF1ab/nsp12801T801AActGct33B.1.360.000438
ORF1ab/nsp12801T801NaCtaAt33B.1.617.20.000011
ORF1ab/nsp12801T801YACtTAt220.111111
ORF1ab/nsp12801T801IaCtaTt120.055556
ORF1ab/nsp12801T801IaCTaTC120.055556
ORF1ab/nsp12801T801FACTTTC120.055556
ORF1ab/nsp12801T801FACtTTt120.055556
ORF1ab/nsp12801T801YACtTAt22All0
ORF1ab/nsp12801T801PActCct22All0
ORF1ab/nsp12801T801KaCTaAA22All0
ORF1ab/nsp12801T801del1aCta-t22All0
ORF1ab/nsp12801T801FACTTTC12All0
ORF1ab/nsp12801T801FACtTTt12All0
ORF1ab/nsp12801T801TacTacC12AY.1020.000027
ORF1ab/nsp12801T801TacTacA12AY.1020.000027
ORF1ab/nsp12801T801TacTacA22AY.1030.000012
ORF1ab/nsp12801T801IaCtaTt22AY.1060.00067
ORF1ab/nsp12801T801IaCtaTt22AY.200.000078
ORF1ab/nsp12801T801IaCtaTt22AY.240.000862
ORF1ab/nsp12801T801TacTacA22AY.250.000012
ORF1ab/nsp12801T801NaCtaAt22AY.250.000012
ORF1ab/nsp12801T801SaCtaGt22AY.250.000012
ORF1ab/nsp12801T801IaCtaTt22AY.4.10.001475
ORF1ab/nsp12801T801TacTacC12AY.4.20.000022
ORF1ab/nsp12801T801TacTacG12AY.4.20.000022
ORF1ab/nsp12801T801IaCtaTt22AY.420.00008
ORF1ab/nsp12801T801NaCtaAt22AY.440.000012
ORF1ab/nsp12801T801IaCtaTt22AY.46.20.001271
ORF1ab/nsp12801T801TacTacC22AY.470.000062
ORF1ab/nsp12801T801IaCtaTt22AY.590.001059
ORF1ab/nsp12801T801NaCtaAt22AY.610.00021
ORF1ab/nsp12801T801IaCtaTt22AY.640.00119
ORF1ab/nsp12801T801IaCtaTt22AY.75.10.000361
ORF1ab/nsp12801T801NaCtaAt22AY.9.10.000167
ORF1ab/nsp12801T801IaCtaTt22AY.9.20.000073
ORF1ab/nsp12801T801TacTacC12AY.9.20.000037
ORF1ab/nsp12801T801TacTacA12AY.9.20.000037
ORF1ab/nsp12801T801TacTacG12B.10.000009
ORF1ab/nsp12801T801TacTacA12B.10.000009
ORF1ab/nsp12801T801IaCtaTt22B.1.1.3890.012121
ORF1ab/nsp12801T801delACT---22B.1.1.70.000002
ORF1ab/nsp12801T801IaCtaTt22B.1.1600.000062
ORF1ab/nsp12801T801IaCtaTt22B.1.1770.000026
ORF1ab/nsp12801T801TacTacA22B.1.5250.000226
ORF1ab/nsp12801T801IaCtaTt22C.36.30.001134
ORF1ab/nsp12801T801TacTacC22C.370.000232
ORF1ab/nsp12801T801IaCtaTt22D.20.00015
ORF1ab/nsp12801T801TacTacG12D.20.000075
ORF1ab/nsp12801T801TacTacC12D.20.000075
ORF1ab/nsp12801T801EACTGAA110.055556
ORF1ab/nsp12801T801KaCTaAA110.055556
ORF1ab/nsp12801T801XACTTAA110.055556
ORF1ab/nsp12801T801TacTacG11A.2.5.10.004808
ORF1ab/nsp12801T801RaCTaGG11All0
ORF1ab/nsp12801T801VACtGTt11All0
ORF1ab/nsp12801T801XACTTAA11All0
ORF1ab/nsp12801T801EACTGAA11All0
ORF1ab/nsp12801T801TacTacA11AY.1000.000046
ORF1ab/nsp12801T801IaCtaTt11AY.1010.00049
ORF1ab/nsp12801T801AActGct11AY.1020.000027
ORF1ab/nsp12801T801NaCtaAt11AY.1030.000006
ORF1ab/nsp12801T801delACT---11AY.1030.000006
ORF1ab/nsp12801T801IaCtaTt11AY.1130.000142
ORF1ab/nsp12801T801IaCtaTt11AY.1170.000085
ORF1ab/nsp12801T801AActGct11AY.1180.000063
ORF1ab/nsp12801T801NaCtaAt11AY.1180.000063
ORF1ab/nsp12801T801TacTacG11AY.1210.000135
ORF1ab/nsp12801T801NaCtaAt11AY.16.10.00047
ORF1ab/nsp12801T801del1aCta-t11AY.250.000006
ORF1ab/nsp12801T801VACtGTt11AY.30.00001
ORF1ab/nsp12801T801NaCtaAt11AY.30.00001
ORF1ab/nsp12801T801IaCtaTt11AY.330.000067
ORF1ab/nsp12801T801TacTacC11AY.330.000067
ORF1ab/nsp12801T801AActGct11AY.4.20.000022
ORF1ab/nsp12801T801IaCtaTt11AY.4.20.000022
ORF1ab/nsp12801T801TacTacC11AY.4.2.10.000149
ORF1ab/nsp12801T801IaCtaTt11AY.4.50.000107
ORF1ab/nsp12801T801AActGct11AY.420.00004
ORF1ab/nsp12801T801TacTacC11AY.420.00004
ORF1ab/nsp12801T801TacTacC11AY.430.000004
ORF1ab/nsp12801T801AActGct11AY.430.000004
ORF1ab/nsp12801T801IaCtaTt11AY.450.000122
ORF1ab/nsp12801T801SaCtaGt11AY.450.000122
ORF1ab/nsp12801T801IaCtaTt11AY.460.000104
ORF1ab/nsp12801T801AActGct11AY.46.40.000165
ORF1ab/nsp12801T801AActGct11AY.46.60.000072
ORF1ab/nsp12801T801NaCtaAt11AY.470.000031
ORF1ab/nsp12801T801TacTacG11AY.480.000465
ORF1ab/nsp12801T801IaCtaTt11AY.540.000095
ORF1ab/nsp12801T801NaCtaAt11AY.540.000095
ORF1ab/nsp12801T801TacTacC11AY.590.00053
ORF1ab/nsp12801T801IaCtaTt11AY.670.000464
ORF1ab/nsp12801T801IaCtaTt11AY.70.000196
ORF1ab/nsp12801T801AActGct11AY.7.10.000113
ORF1ab/nsp12801T801AActGct11AY.700.000209
ORF1ab/nsp12801T801IaCtaTt11AY.750.000056
ORF1ab/nsp12801T801TacTacC11AY.790.001211
ORF1ab/nsp12801T801NaCtaAt11AY.9.20.000037
ORF1ab/nsp12801T801IaCtaTt11AY.98.10.000048
ORF1ab/nsp12801T801NaCtaAt11B.10.000009
ORF1ab/nsp12801T801AActGct11B.10.000009
ORF1ab/nsp12801T801TacTacC11B.1.10.000018
ORF1ab/nsp12801T801delACT---11B.1.10.000018
ORF1ab/nsp12801T801IaCtaTt11B.1.1.2160.00089
ORF1ab/nsp12801T801IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp12801T801SaCtaGt11B.1.1.3630.005988
ORF1ab/nsp12801T801IaCtaTt11B.1.1.370.000193
ORF1ab/nsp12801T801TacTacC11B.1.1.3780.007299
ORF1ab/nsp12801T801IaCtaTt11B.1.1.4330.001425
ORF1ab/nsp12801T801TacTacA11B.1.1.670.004566
ORF1ab/nsp12801T801RaCTaGG11B.1.1.70.000001
ORF1ab/nsp12801T801NaCtaAt11B.1.160.160.000929
ORF1ab/nsp12801T801TacTacC11B.1.1770.000013
ORF1ab/nsp12801T801IaCtaTt11B.1.177.210.000076
ORF1ab/nsp12801T801delACT---11B.1.177.830.001481
ORF1ab/nsp12801T801NaCtaAt11B.1.20.000009
ORF1ab/nsp12801T801PActCct11B.1.20.000009
ORF1ab/nsp12801T801AActGct11B.1.2060.000816
ORF1ab/nsp12801T801TacTacA11B.1.2210.000071
ORF1ab/nsp12801T801NaCtaAt11B.1.2210.000071
ORF1ab/nsp12801T801IaCtaTt11B.1.2210.000071
ORF1ab/nsp12801T801KaCTaAA11B.1.2210.000071
ORF1ab/nsp12801T801PActCct11B.1.2220.001692
ORF1ab/nsp12801T801TacTacA11B.1.2400.000216
ORF1ab/nsp12801T801TacTacC11B.1.3200.001245
ORF1ab/nsp12801T801TacTacC11B.1.3380.008621
ORF1ab/nsp12801T801IaCtaTt11B.1.360.000146
ORF1ab/nsp12801T801NaCtaAt11B.1.3890.001002
ORF1ab/nsp12801T801TacTacG11B.1.3960.000706
ORF1ab/nsp12801T801IaCtaTt11B.1.4220.000812
ORF1ab/nsp12801T801IaCtaTt11B.1.4250.002994
ORF1ab/nsp12801T801NaCtaAt11B.1.4990.00105
ORF1ab/nsp12801T801NaCtaAt11B.1.5640.000426
ORF1ab/nsp12801T801IaCtaTt11B.1.5820.000491
ORF1ab/nsp12801T801del1aCta-t11B.1.617.10.000129
ORF1ab/nsp12801T801delACT---11B.1.617.20.000004
ORF1ab/nsp12801T801AActGct11B.1.6370.000073
ORF1ab/nsp12801T801IaCtaTt11B.30.000831
ORF1ab/nsp12801T801delACT---11B.610.005747
ORF1ab/nsp12801T801SActTct11C.370.000116
ORF1ab/nsp12801T801NaCtaAt11C.370.000116
ORF1ab/nsp12801T801NaCtaAt11D.20.000075
ORF1ab/nsp12801T801IaCtaTt11N.30.005814
ORF1ab/nsp12801T801TacTacG11P.1.100.000269
ORF1ab/nsp12801T801TacTacA11P.1.140.000048
ORF1ab/nsp12801T801IaCtaTt11P.1.70.000319
ORF1ab/nsp12801T801IaCtaTt11P.30.001595
ORF1ab/nsp12801T801delACT---11Q.10.000126