CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 797 & Codon = gcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12797A797AA5189AsyngcAgcT3542780.78531115829-15831

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12797A797AgcAgcT278354All0.000053
ORF1ab/nsp12797A797AgcAgcT7278B.1.1.70.000064
ORF1ab/nsp12797A797AgcAgcT7373B.1.5960.006361
ORF1ab/nsp12797A797AgcAgcT2525AY.3.10.002131
ORF1ab/nsp12797A797AgcAgcT1819B.10.000165
ORF1ab/nsp12797A797AgcAgcT1518B.1.5260.000353
ORF1ab/nsp12797A797AgcAgcT817AY.40.000012
ORF1ab/nsp12797A797AgcAgcT57AY.1030.000031
ORF1ab/nsp12797A797AgcAgcT17AY.440.000006
ORF1ab/nsp12797A797AgcAgcT56AY.250.00003
ORF1ab/nsp12797A797AgcAgcT55AY.4.50.000537
ORF1ab/nsp12797A797AgcAgcT55B.1.20.000044
ORF1ab/nsp12797A797AgcAgcT140.055556
ORF1ab/nsp12797A797AgcAgcT34AY.30.00003
ORF1ab/nsp12797A797AgcAgcT14B.1.617.20.000004
ORF1ab/nsp12797A797AgcAgcT33B.1.10.000054
ORF1ab/nsp12797A797AgcAgcT23B.1.3510.000059
ORF1ab/nsp12797A797AgcAgcT12AY.1020.000027
ORF1ab/nsp12797A797AgcAgcT22AY.1100.000225
ORF1ab/nsp12797A797AgcAgcT22AY.1200.000074
ORF1ab/nsp12797A797AgcAgcT12AY.430.000004
ORF1ab/nsp12797A797AgcAgcT22B.1.1.5190.000079
ORF1ab/nsp12797A797AgcAgcT22B.1.1.5210.010695
ORF1ab/nsp12797A797AgcAgcT22B.1.177.540.001213
ORF1ab/nsp12797A797AgcAgcT22P.10.000032
ORF1ab/nsp12797A797AgcAgcT11AY.1090.00074
ORF1ab/nsp12797A797AgcAgcT11AY.1190.000035
ORF1ab/nsp12797A797AgcAgcT11AY.290.000016
ORF1ab/nsp12797A797AgcAgcT11AY.50.000021
ORF1ab/nsp12797A797AgcAgcT11AY.60.000041
ORF1ab/nsp12797A797AgcAgcT11AY.880.000884
ORF1ab/nsp12797A797AgcAgcT11B.1.1.10.000327
ORF1ab/nsp12797A797AgcAgcT11B.1.177.620.001192
ORF1ab/nsp12797A797AgcAgcT11B.1.2210.000071
ORF1ab/nsp12797A797AgcAgcT11B.1.2430.00007
ORF1ab/nsp12797A797AgcAgcT11B.1.2580.000067
ORF1ab/nsp12797A797AgcAgcT11B.1.351.50.0006
ORF1ab/nsp12797A797AgcAgcT11B.1.360.000146
ORF1ab/nsp12797A797AgcAgcT11B.1.4290.000024
ORF1ab/nsp12797A797AgcAgcT11B.1.4620.007246
ORF1ab/nsp12797A797AgcAgcT11B.1.4970.000315
ORF1ab/nsp12797A797AgcAgcT11B.1.6000.005848
ORF1ab/nsp12797A797AgcAgcT11B.290.003509
ORF1ab/nsp12797A797AgcAgcT11D.20.000075
ORF1ab/nsp12797A797AgcAgcT11P.1.10.000318
ORF1ab/nsp12797A797AgcAgcT11P.1.130.000898
ORF1ab/nsp12797A797AgcAgcT11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.