CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 790 | N790N | N5182N | syn | aaC | aaT | 14975 | 14975 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790del | N5182del | del | AAC | --- | 10 | 10 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790K | N5182K | nonsyn | aaC | aaA | 10 | 8 | 0.8 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790K | N5182K | nonsyn | aaC | aaG | 10 | 2 | 0.2 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790G | N5182G | nonsyn | AAC | GGT | 8 | 7 | 0.875 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790I | N5182I | nonsyn | aAc | aTc | 8 | 6 | 0.75 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790G | N5182G | nonsyn | AAC | GGA | 8 | 1 | 0.125 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790I | N5182I | nonsyn | aAC | aTT | 8 | 1 | 0.125 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790I | N5182I | nonsyn | aAC | aTA | 8 | 1 | 0.125 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790L | N5182L | nonsyn | AAC | TTA | 4 | 2 | 0.5 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790L | N5182L | nonsyn | AAC | CTA | 4 | 1 | 0.25 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790L | N5182L | nonsyn | AAc | CTc | 4 | 1 | 0.25 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790D | N5182D | nonsyn | Aac | Gac | 3 | 3 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790T | N5182T | nonsyn | aAC | aCA | 2 | 2 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790Y | N5182Y | nonsyn | Aac | Tac | 2 | 2 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790S | N5182S | nonsyn | aAc | aGc | 2 | 2 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790del1 | N5182del1 | del | aaC | aa- | 1 | 1 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790del2 | N5182del2 | del | aAC | a-- | 1 | 1 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790Q | N5182Q | nonsyn | AaC | CaA | 1 | 1 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790H | N5182H | nonsyn | Aac | Cac | 1 | 1 | 1 | 15808-15810 |
ORF1ab/nsp12 | 790 | N790X | N5182X | nonsyn | AaC | TaG | 1 | 1 | 1 | 15808-15810 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 14975 | 14975 | All | 0.002864 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7966 | 7966 | AY.117 | 0.673259 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1397 | 1397 | B.1.429 | 0.03287 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1275 | 1275 | B.1.617.2 | 0.004801 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 976 | 976 | B.1.1.7 | 0.000874 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 327 | 327 | AY.43 | 0.001449 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 296 | 296 | AY.4 | 0.000461 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 202 | 202 | AY.25 | 0.001215 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 201 | 201 | B.1.177 | 0.002647 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 200 | 200 | B.1.2 | 0.001761 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 189 | 189 | B.1.1.28 | 0.058824 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 144 | 144 | AY.39 | 0.003558 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 108 | 108 | AY.102 | 0.002864 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 95 | 95 | B.1 | 0.00087 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 91 | 91 | P.1 | 0.001434 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 78 | 78 | AY.46.5 | 0.015476 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 69 | 69 | AY.3 | 0.000686 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 66 | 66 | AY.44 | 0.000402 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 52 | 52 | B.1.609 | 0.024928 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 50 | 50 | B.1.524 | 0.070323 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 45 | 45 | AY.103 | 0.000279 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 44 | 44 | B.1.1.519 | 0.001747 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 40 | 40 | B.1.596 | 0.003486 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 36 | 36 | B.1.1 | 0.000653 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 35 | 35 | C.37 | 0.004062 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 32 | 32 | AY.4.2 | 0.000694 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 31 | 31 | AY.120 | 0.001153 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 27 | 27 | AY.23 | 0.001883 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 26 | 26 | AY.9.1 | 0.002177 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 25 | 25 | P.2 | 0.004666 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 21 | 21 | AY.26 | 0.000595 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 21 | 21 | B.1.438.1 | 0.002252 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 20 | 20 | B.1.243 | 0.001392 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 19 | 19 | AY.46 | 0.001978 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 19 | 19 | AY.51 | 0.017273 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 17 | 17 | B.1.36 | 0.00248 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 15 | 15 | B.1.570 | 0.044118 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 14 | 14 | B.1.177.18 | 0.016241 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 14 | 14 | P.1.7 | 0.00447 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 13 | 13 | AY.37 | 0.004109 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 13 | 13 | B.1.177.35 | 0.008984 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 11 | 11 | AY.116 | 0.003155 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 10 | 10 | All | 0.000002 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaA | 8 | 10 | All | 0.000002 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaG | 2 | 10 | All | 0 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 10 | 10 | AY.84 | 0.004374 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 10 | 10 | AY.91 | 0.007305 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp12 | 790 | N790G | AAC | GGT | 7 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 790 | N790I | aAc | aTc | 6 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 790 | N790I | aAC | aTT | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 790 | N790G | AAC | GGA | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 790 | N790I | aAC | aTA | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | AY.68 | 0.00219 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | AY.74 | 0.000925 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | AY.78 | 0.012327 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | B.1.1.277 | 0.00607 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | B.1.160.30 | 0.020833 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | B.1.177.42 | 0.006261 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp12 | 790 | N790G | AAC | GGT | 6 | 6 | 0.333333 | |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 6 | 6 | B.1.497 | 0.001889 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 5 | 5 | AA.7 | 0.045872 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaA | 3 | 4 | 0.166667 | |
ORF1ab/nsp12 | 790 | N790L | AAC | TTA | 2 | 4 | 0.111111 | |
ORF1ab/nsp12 | 790 | N790L | AAC | CTA | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790K | aaC | aaG | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790L | AAc | CTc | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790L | AAC | TTA | 2 | 4 | All | 0 |
ORF1ab/nsp12 | 790 | N790L | AAC | CTA | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 790 | N790L | AAc | CTc | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.39.1.1 | 0.002899 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | B.1.36.26 | 0.011429 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | B.1.362 | 0.006163 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp12 | 790 | N790D | Aac | Gac | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.46.3 | 0.002801 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaA | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaG | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.177.40 | 0.015464 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | C.36.3.1 | 0.008152 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp12 | 790 | N790I | aAC | aTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790I | aAc | aTc | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 790 | N790Y | Aac | Tac | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 790 | N790T | aAC | aCA | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 790 | N790S | aAc | aGc | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.170 | 0.008621 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | C.20 | 0.153846 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 790 | N790X | AaC | TaG | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790Y | Aac | Tac | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790Q | AaC | CaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790H | Aac | Cac | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 790 | N790I | aAc | aTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 790 | N790X | AaC | TaG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 790 | N790del2 | aAC | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 790 | N790H | Aac | Cac | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 790 | N790del1 | aaC | aa- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 790 | N790Q | AaC | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp12 | 790 | N790T | aAC | aCA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 790 | N790D | Aac | Gac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 790 | N790del1 | aaC | aa- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 790 | N790del2 | aAC | a-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 790 | N790I | aAC | aTT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 790 | N790D | Aac | Gac | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 790 | N790I | aAc | aTc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 790 | N790G | AAC | GGA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 790 | N790T | aAC | aCA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 790 | N790I | aAc | aTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 790 | N790I | aAc | aTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.325 | 0.025641 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.461 | 0.012048 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp12 | 790 | N790D | Aac | Gac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 790 | N790G | AAC | GGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 790 | N790S | aAc | aGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 790 | N790K | aaC | aaA | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 790 | N790Y | Aac | Tac | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 790 | N790S | aAc | aGc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.252 | 0.006623 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.341 | 0.022727 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 790 | N790I | aAc | aTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | C.33 | 0.058824 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp12 | 790 | N790N | aaC | aaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp12 | 790 | N790del | AAC | --- | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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