CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 778

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12778S778SS5170SsynagCagT977977115772-15774
ORF1ab/nsp12778S778NS5170NnonsynaGcaAc6146130.99837115772-15774
ORF1ab/nsp12778S778NS5170NnonsynaGCaAT61410.0016286615772-15774
ORF1ab/nsp12778S778GS5170GnonsynAgcGgc5151115772-15774
ORF1ab/nsp12778S778CS5170CnonsynAgcTgc27260.96296315772-15774
ORF1ab/nsp12778S778CS5170CnonsynAgCTgT2710.03703715772-15774
ORF1ab/nsp12778S778IS5170InonsynaGcaTc22210.95454515772-15774
ORF1ab/nsp12778S778IS5170InonsynaGCaTA2210.045454515772-15774
ORF1ab/nsp12778S778delS5170deldelAGC---1818115772-15774
ORF1ab/nsp12778S778RS5170RnonsynagCagA730.42857115772-15774
ORF1ab/nsp12778S778RS5170RnonsynagCagG730.42857115772-15774
ORF1ab/nsp12778S778RS5170RnonsynAgcCgc710.14285715772-15774
ORF1ab/nsp12778S778TS5170TnonsynaGcaCc55115772-15774
ORF1ab/nsp12778S778YS5170YnonsynAGcTAc320.66666715772-15774
ORF1ab/nsp12778S778YS5170YnonsynAGCTAT310.33333315772-15774
ORF1ab/nsp12778S778LS5170LnonsynAGCTTA210.515772-15774
ORF1ab/nsp12778S778XS5170XnonsynAgCTgA210.515772-15774
ORF1ab/nsp12778S778XS5170XnonsynAGCTAG210.515772-15774
ORF1ab/nsp12778S778LS5170LnonsynAGcCTc210.515772-15774
ORF1ab/nsp12778S778KS5170KnonsynaGCaAG11115772-15774
ORF1ab/nsp12778S778WS5170WnonsynAgCTgG11115772-15774
ORF1ab/nsp12778S778del2S5170del2delAGc--c11115772-15774
ORF1ab/nsp12778S778AS5170AnonsynAGCGCA11115772-15774
ORF1ab/nsp12778S778FS5170FnonsynAGcTTc11115772-15774

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12778S778SagCagT977977All0.000187
ORF1ab/nsp12778S778NaGcaAc613614All0.000117
ORF1ab/nsp12778S778NaGCaAT1614All0
ORF1ab/nsp12778S778SagCagT183183B.1.1.70.000164
ORF1ab/nsp12778S778NaGcaAc178178B.1.1.70.000159
ORF1ab/nsp12778S778SagCagT154154AY.1030.000956
ORF1ab/nsp12778S778NaGcaAc145145B.1.617.20.000546
ORF1ab/nsp12778S778SagCagT111111AY.40.000173
ORF1ab/nsp12778S778NaGcaAc108108AY.430.000478
ORF1ab/nsp12778S778SagCagT7373AY.250.000439
ORF1ab/nsp12778S778GAgcGgc5151All0.00001
ORF1ab/nsp12778S778SagCagT4747B.1.617.20.000177
ORF1ab/nsp12778S778NaGcaAc4444B.1.1.3430.916667
ORF1ab/nsp12778S778SagCagT4444B.1.1.5190.001747
ORF1ab/nsp12778S778SagCagT3737B.1.20.000326
ORF1ab/nsp12778S778CAgcTgc2627All0.000005
ORF1ab/nsp12778S778CAgCTgT127All0
ORF1ab/nsp12778S778SagCagT2626A.270.043046
ORF1ab/nsp12778S778SagCagT2323AY.75.10.004147
ORF1ab/nsp12778S778IaGcaTc2122All0.000004
ORF1ab/nsp12778S778IaGCaTA122All0
ORF1ab/nsp12778S778NaGcaAc2020AY.40.000031
ORF1ab/nsp12778S778SagCagT1919B.1.1600.000593
ORF1ab/nsp12778S778delAGC---1818All0.000003
ORF1ab/nsp12778S778SagCagT1818AY.39.10.000713
ORF1ab/nsp12778S778SagCagT1313AY.440.000079
ORF1ab/nsp12778S778SagCagT1212AY.430.000053
ORF1ab/nsp12778S778NaGcaAc1212AY.440.000073
ORF1ab/nsp12778S778NaGcaAc1111AY.390.000272
ORF1ab/nsp12778S778SagCagT1111B.1.1.2320.019964
ORF1ab/nsp12778S778SagCagT1111C.370.001277
ORF1ab/nsp12778S778GAgcGgc1010AY.40.000016
ORF1ab/nsp12778S778SagCagT99AY.290.000142
ORF1ab/nsp12778S778SagCagT99AY.60.00037
ORF1ab/nsp12778S778SagCagT99B.10.000082
ORF1ab/nsp12778S778delAGC---880.444444
ORF1ab/nsp12778S778SagCagT88AY.30.00008
ORF1ab/nsp12778S778RagCagA37All0.000001
ORF1ab/nsp12778S778RagCagG37All0.000001
ORF1ab/nsp12778S778RAgcCgc17All0
ORF1ab/nsp12778S778SagCagT77AY.340.000679
ORF1ab/nsp12778S778SagCagT77AY.4.20.000152
ORF1ab/nsp12778S778NaGcaAc77B.1.1770.000092
ORF1ab/nsp12778S778SagCagT77B.1.438.10.000751
ORF1ab/nsp12778S778GAgcGgc77B.1.617.20.000026
ORF1ab/nsp12778S778NaGcaAc66A.190.056604
ORF1ab/nsp12778S778NaGcaAc66AY.1030.000037
ORF1ab/nsp12778S778SagCagT66AY.260.00017
ORF1ab/nsp12778S778IaGcaTc66AY.40.000009
ORF1ab/nsp12778S778SagCagT66B.1.1.280.001867
ORF1ab/nsp12778S778SagCagT66B.1.1.2980.005172
ORF1ab/nsp12778S778SagCagT66B.1.2430.000418
ORF1ab/nsp12778S778SagCagT66P.10.000095
ORF1ab/nsp12778S778TaGcaCc55All0.000001
ORF1ab/nsp12778S778SagCagT55AY.1020.000133
ORF1ab/nsp12778S778GAgcGgc55AY.250.00003
ORF1ab/nsp12778S778NaGcaAc55AY.360.000741
ORF1ab/nsp12778S778NaGcaAc55AY.460.00052
ORF1ab/nsp12778S778CAgcTgc55B0.000639
ORF1ab/nsp12778S778NaGcaAc55B.1.1.2140.000277
ORF1ab/nsp12778S778CAgcTgc55B.1.360.00073
ORF1ab/nsp12778S778CAgcTgc340.166667
ORF1ab/nsp12778S778CAgCTgT140.055556
ORF1ab/nsp12778S778GAgcGgc44AY.440.000024
ORF1ab/nsp12778S778SagCagT44AY.700.000834
ORF1ab/nsp12778S778CAgcTgc44B.10.000037
ORF1ab/nsp12778S778SagCagT44B.1.1770.000053
ORF1ab/nsp12778S778SagCagT44B.1.4290.000094
ORF1ab/nsp12778S778SagCagT44C.360.003643
ORF1ab/nsp12778S778NaGcaAc230.111111
ORF1ab/nsp12778S778YAGcTAc230.111111
ORF1ab/nsp12778S778RagCagG230.111111
ORF1ab/nsp12778S778RagCagA130.055556
ORF1ab/nsp12778S778YAGCTAT130.055556
ORF1ab/nsp12778S778NaGCaAT130.055556
ORF1ab/nsp12778S778YAGcTAc23All0
ORF1ab/nsp12778S778YAGCTAT13All0
ORF1ab/nsp12778S778SagCagT33AY.390.000074
ORF1ab/nsp12778S778GAgcGgc33AY.430.000013
ORF1ab/nsp12778S778SagCagT33B.1.10.000054
ORF1ab/nsp12778S778SagCagT33B.1.1.1530.003286
ORF1ab/nsp12778S778SagCagT33B.1.177.40.000633
ORF1ab/nsp12778S778NaGcaAc33B.1.20.000026
ORF1ab/nsp12778S778SagCagT33B.1.5260.000071
ORF1ab/nsp12778S778IaGcaTc33B.1.617.20.000011
ORF1ab/nsp12778S778XAGCTAG120.055556
ORF1ab/nsp12778S778XAgCTgA120.055556
ORF1ab/nsp12778S778IaGcaTc120.055556
ORF1ab/nsp12778S778IaGCaTA120.055556
ORF1ab/nsp12778S778XAgCTgA12All0
ORF1ab/nsp12778S778LAGcCTc12All0
ORF1ab/nsp12778S778LAGCTTA12All0
ORF1ab/nsp12778S778XAGCTAG12All0
ORF1ab/nsp12778S778NaGcaAc22AY.10.000791
ORF1ab/nsp12778S778NaGcaAc22AY.1020.000053
ORF1ab/nsp12778S778IaGcaTc22AY.1030.000012
ORF1ab/nsp12778S778NaGcaAc22AY.1140.000462
ORF1ab/nsp12778S778NaGcaAc22AY.1190.000071
ORF1ab/nsp12778S778NaGcaAc22AY.140.000176
ORF1ab/nsp12778S778SagCagT22AY.200.000078
ORF1ab/nsp12778S778NaGcaAc22AY.250.000012
ORF1ab/nsp12778S778NaGcaAc22AY.30.00002
ORF1ab/nsp12778S778GAgcGgc22AY.30.00002
ORF1ab/nsp12778S778SagCagT22AY.330.000134
ORF1ab/nsp12778S778CAgcTgc22AY.40.000003
ORF1ab/nsp12778S778NaGcaAc22AY.4.40.000818
ORF1ab/nsp12778S778SagCagT22AY.420.00008
ORF1ab/nsp12778S778NaGcaAc22AY.490.00639
ORF1ab/nsp12778S778NaGcaAc22AY.870.001665
ORF1ab/nsp12778S778SagCagT22AY.870.001665
ORF1ab/nsp12778S778SagCagT22AY.99.20.000184
ORF1ab/nsp12778S778IaGcaTc22B.10.000018
ORF1ab/nsp12778S778SagCagT22B.1.1.630.000772
ORF1ab/nsp12778S778GAgcGgc22B.1.1.70.000002
ORF1ab/nsp12778S778delAGC---22B.1.1.70.000002
ORF1ab/nsp12778S778NaGcaAc22B.1.1600.000062
ORF1ab/nsp12778S778SagCagT22B.1.177.860.000367
ORF1ab/nsp12778S778GAgcGgc22B.1.20.000018
ORF1ab/nsp12778S778SagCagT22B.1.2210.000142
ORF1ab/nsp12778S778SagCagT22B.1.258.170.000208
ORF1ab/nsp12778S778NaGcaAc22B.1.360.000292
ORF1ab/nsp12778S778CAgcTgc22B.1.4290.000047
ORF1ab/nsp12778S778NaGcaAc22B.1.5260.000047
ORF1ab/nsp12778S778NaGcaAc22P.10.000032
ORF1ab/nsp12778S778SagCagT110.055556
ORF1ab/nsp12778S778FAGcTTc110.055556
ORF1ab/nsp12778S778LAGCTTA110.055556
ORF1ab/nsp12778S778WAgCTgG110.055556
ORF1ab/nsp12778S778KaGCaAG110.055556
ORF1ab/nsp12778S778SagCagT11A.20.000662
ORF1ab/nsp12778S778FAGcTTc11All0
ORF1ab/nsp12778S778WAgCTgG11All0
ORF1ab/nsp12778S778KaGCaAG11All0
ORF1ab/nsp12778S778del2AGc--c11All0
ORF1ab/nsp12778S778AAGCGCA11All0
ORF1ab/nsp12778S778SagCagT11AP.10.001502
ORF1ab/nsp12778S778NaGcaAc11AY.100.00053
ORF1ab/nsp12778S778SagCagT11AY.1000.000046
ORF1ab/nsp12778S778GAgcGgc11AY.1030.000006
ORF1ab/nsp12778S778SagCagT11AY.1050.000643
ORF1ab/nsp12778S778SagCagT11AY.1060.000335
ORF1ab/nsp12778S778GAgcGgc11AY.1160.000287
ORF1ab/nsp12778S778NaGcaAc11AY.1180.000063
ORF1ab/nsp12778S778delAGC---11AY.1180.000063
ORF1ab/nsp12778S778SagCagT11AY.1190.000035
ORF1ab/nsp12778S778SagCagT11AY.1200.000037
ORF1ab/nsp12778S778SagCagT11AY.1210.000135
ORF1ab/nsp12778S778IaGcaTc11AY.140.000088
ORF1ab/nsp12778S778SagCagT11AY.160.00038
ORF1ab/nsp12778S778SagCagT11AY.190.00114
ORF1ab/nsp12778S778NaGcaAc11AY.230.00007
ORF1ab/nsp12778S778SagCagT11AY.270.000065
ORF1ab/nsp12778S778SagCagT11AY.280.00189
ORF1ab/nsp12778S778GAgcGgc11AY.3.10.000085
ORF1ab/nsp12778S778NaGcaAc11AY.320.000532
ORF1ab/nsp12778S778NaGcaAc11AY.330.000067
ORF1ab/nsp12778S778SagCagT11AY.360.000148
ORF1ab/nsp12778S778IaGcaTc11AY.4.20.000022
ORF1ab/nsp12778S778GAgcGgc11AY.4.20.000022
ORF1ab/nsp12778S778NaGcaAc11AY.4.2.10.000149
ORF1ab/nsp12778S778delAGC---11AY.4.50.000107
ORF1ab/nsp12778S778delAGC---11AY.430.000004
ORF1ab/nsp12778S778RAgcCgc11AY.440.000006
ORF1ab/nsp12778S778CAgcTgc11AY.440.000006
ORF1ab/nsp12778S778TaGcaCc11AY.440.000006
ORF1ab/nsp12778S778NaGcaAc11AY.450.000122
ORF1ab/nsp12778S778NaGcaAc11AY.46.10.001027
ORF1ab/nsp12778S778SagCagT11AY.46.40.000165
ORF1ab/nsp12778S778SagCagT11AY.470.000031
ORF1ab/nsp12778S778AAGCGCA11AY.480.000465
ORF1ab/nsp12778S778SagCagT11AY.50.000021
ORF1ab/nsp12778S778SagCagT11AY.520.000814
ORF1ab/nsp12778S778SagCagT11AY.560.001605
ORF1ab/nsp12778S778GAgcGgc11AY.60.000041
ORF1ab/nsp12778S778SagCagT11AY.610.000105
ORF1ab/nsp12778S778NaGcaAc11AY.610.000105
ORF1ab/nsp12778S778GAgcGgc11AY.670.000464
ORF1ab/nsp12778S778SagCagT11AY.7.10.000113
ORF1ab/nsp12778S778NaGcaAc11AY.740.000116
ORF1ab/nsp12778S778SagCagT11AY.740.000116
ORF1ab/nsp12778S778NaGcaAc11AY.750.000056
ORF1ab/nsp12778S778RagCagA11AY.750.000056
ORF1ab/nsp12778S778NaGcaAc11AY.810.001992
ORF1ab/nsp12778S778NaGcaAc11AY.840.000437
ORF1ab/nsp12778S778SagCagT11AY.880.000884
ORF1ab/nsp12778S778delAGC---11AY.90.000068
ORF1ab/nsp12778S778NaGcaAc11AY.9.20.000037
ORF1ab/nsp12778S778NaGcaAc11AY.950.000761
ORF1ab/nsp12778S778SagCagT11AY.970.001701
ORF1ab/nsp12778S778GAgcGgc11AY.980.000079
ORF1ab/nsp12778S778GAgcGgc11AY.990.001049
ORF1ab/nsp12778S778NaGcaAc11AY.99.20.000092
ORF1ab/nsp12778S778GAgcGgc11AY.99.20.000092
ORF1ab/nsp12778S778IaGcaTc11B0.000128
ORF1ab/nsp12778S778delAGC---11B.10.000009
ORF1ab/nsp12778S778NaGcaAc11B.10.000009
ORF1ab/nsp12778S778TaGcaCc11B.10.000009
ORF1ab/nsp12778S778GAgcGgc11B.10.000009
ORF1ab/nsp12778S778RagCagG11B.1.10.000018
ORF1ab/nsp12778S778CAgcTgc11B.1.10.000018
ORF1ab/nsp12778S778NaGcaAc11B.1.10.000018
ORF1ab/nsp12778S778NaGcaAc11B.1.1.2180.007692
ORF1ab/nsp12778S778SagCagT11B.1.1.2220.000204
ORF1ab/nsp12778S778NaGcaAc11B.1.1.2970.002237
ORF1ab/nsp12778S778IaGcaTc11B.1.1.3010.001179
ORF1ab/nsp12778S778SagCagT11B.1.1.3180.000302
ORF1ab/nsp12778S778SagCagT11B.1.1.3260.001761
ORF1ab/nsp12778S778SagCagT11B.1.1.3480.000796
ORF1ab/nsp12778S778SagCagT11B.1.1.3690.000446
ORF1ab/nsp12778S778SagCagT11B.1.1.390.00051
ORF1ab/nsp12778S778SagCagT11B.1.1.510.001718
ORF1ab/nsp12778S778IaGcaTc11B.1.1.70.000001
ORF1ab/nsp12778S778CAgcTgc11B.1.1.70.000001
ORF1ab/nsp12778S778SagCagT11B.1.1.700.000341
ORF1ab/nsp12778S778SagCagT11B.1.110.30.000718
ORF1ab/nsp12778S778RagCagA11B.1.1260.001276
ORF1ab/nsp12778S778TaGcaCc11B.1.1600.000031
ORF1ab/nsp12778S778GAgcGgc11B.1.160.160.000929
ORF1ab/nsp12778S778SagCagT11B.1.160.260.002421
ORF1ab/nsp12778S778SagCagT11B.1.177.120.000152
ORF1ab/nsp12778S778IaGcaTc11B.1.177.230.003236
ORF1ab/nsp12778S778SagCagT11B.1.177.560.000668
ORF1ab/nsp12778S778SagCagT11B.1.177.630.002703
ORF1ab/nsp12778S778SagCagT11B.1.177.730.000566
ORF1ab/nsp12778S778delAGC---11B.1.177.830.001481
ORF1ab/nsp12778S778TaGcaCc11B.1.20.000009
ORF1ab/nsp12778S778SagCagT11B.1.2580.000067
ORF1ab/nsp12778S778TaGcaCc11B.1.258.170.000104
ORF1ab/nsp12778S778NaGcaAc11B.1.258.240.010753
ORF1ab/nsp12778S778NaGcaAc11B.1.3510.00003
ORF1ab/nsp12778S778CAgcTgc11B.1.36.100.004785
ORF1ab/nsp12778S778GAgcGgc11B.1.3690.000285
ORF1ab/nsp12778S778SagCagT11B.1.3960.000706
ORF1ab/nsp12778S778NaGcaAc11B.1.4270.00005
ORF1ab/nsp12778S778SagCagT11B.1.4280.00102
ORF1ab/nsp12778S778NaGcaAc11B.1.4290.000024
ORF1ab/nsp12778S778SagCagT11B.1.438.20.019231
ORF1ab/nsp12778S778SagCagT11B.1.5030.002488
ORF1ab/nsp12778S778SagCagT11B.1.5170.000427
ORF1ab/nsp12778S778SagCagT11B.1.5770.000687
ORF1ab/nsp12778S778delAGC---11B.1.617.20.000004
ORF1ab/nsp12778S778NaGcaAc11B.1.619.10.000641
ORF1ab/nsp12778S778SagCagT11B.1.6210.000089
ORF1ab/nsp12778S778NaGcaAc11B.1.6210.000089
ORF1ab/nsp12778S778SagCagT11B.1.6370.000073
ORF1ab/nsp12778S778SagCagT11B.460.020833
ORF1ab/nsp12778S778CAgcTgc11B.550.00295
ORF1ab/nsp12778S778IaGcaTc11B.6.60.000889
ORF1ab/nsp12778S778SagCagT11C.160.00106
ORF1ab/nsp12778S778del2AGc--c11C.170.055556
ORF1ab/nsp12778S778SagCagT11C.230.005814
ORF1ab/nsp12778S778GAgcGgc11P.10.000016
ORF1ab/nsp12778S778GAgcGgc11P.1.120.000484
ORF1ab/nsp12778S778NaGcaAc11P.1.120.000484
ORF1ab/nsp12778S778SagCagT11P.1.140.000048
ORF1ab/nsp12778S778LAGcCTc11P.1.170.000162
ORF1ab/nsp12778S778SagCagT11P.1.60.001946
ORF1ab/nsp12778S778GAgcGgc11P.1.60.001946
ORF1ab/nsp12778S778GAgcGgc11Q.10.000126
ORF1ab/nsp12778S778NaGcaAc11Q.10.000126
ORF1ab/nsp12778S778SagCagT11Q.10.000126
ORF1ab/nsp12778S778delAGC---11Q.10.000126
ORF1ab/nsp12778S778SagCagT11Q.30.000145
ORF1ab/nsp12778S778SagCagT11Q.40.000455