CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 778 | S778S | S5170S | syn | agC | agT | 977 | 977 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778N | S5170N | nonsyn | aGc | aAc | 614 | 613 | 0.998371 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778N | S5170N | nonsyn | aGC | aAT | 614 | 1 | 0.00162866 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778G | S5170G | nonsyn | Agc | Ggc | 51 | 51 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778C | S5170C | nonsyn | Agc | Tgc | 27 | 26 | 0.962963 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778C | S5170C | nonsyn | AgC | TgT | 27 | 1 | 0.037037 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778I | S5170I | nonsyn | aGc | aTc | 22 | 21 | 0.954545 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778I | S5170I | nonsyn | aGC | aTA | 22 | 1 | 0.0454545 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778del | S5170del | del | AGC | --- | 18 | 18 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778R | S5170R | nonsyn | agC | agA | 7 | 3 | 0.428571 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778R | S5170R | nonsyn | agC | agG | 7 | 3 | 0.428571 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778R | S5170R | nonsyn | Agc | Cgc | 7 | 1 | 0.142857 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778T | S5170T | nonsyn | aGc | aCc | 5 | 5 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778Y | S5170Y | nonsyn | AGc | TAc | 3 | 2 | 0.666667 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778Y | S5170Y | nonsyn | AGC | TAT | 3 | 1 | 0.333333 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778L | S5170L | nonsyn | AGC | TTA | 2 | 1 | 0.5 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778X | S5170X | nonsyn | AgC | TgA | 2 | 1 | 0.5 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778X | S5170X | nonsyn | AGC | TAG | 2 | 1 | 0.5 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778L | S5170L | nonsyn | AGc | CTc | 2 | 1 | 0.5 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778K | S5170K | nonsyn | aGC | aAG | 1 | 1 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778W | S5170W | nonsyn | AgC | TgG | 1 | 1 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778del2 | S5170del2 | del | AGc | --c | 1 | 1 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778A | S5170A | nonsyn | AGC | GCA | 1 | 1 | 1 | 15772-15774 |
ORF1ab/nsp12 | 778 | S778F | S5170F | nonsyn | AGc | TTc | 1 | 1 | 1 | 15772-15774 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 977 | 977 | All | 0.000187 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 613 | 614 | All | 0.000117 |
ORF1ab/nsp12 | 778 | S778N | aGC | aAT | 1 | 614 | All | 0 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 183 | 183 | B.1.1.7 | 0.000164 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 178 | 178 | B.1.1.7 | 0.000159 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 154 | 154 | AY.103 | 0.000956 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 145 | 145 | B.1.617.2 | 0.000546 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 111 | 111 | AY.4 | 0.000173 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 108 | 108 | AY.43 | 0.000478 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 73 | 73 | AY.25 | 0.000439 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 51 | 51 | All | 0.00001 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 47 | 47 | B.1.617.2 | 0.000177 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 44 | 44 | B.1.1.343 | 0.916667 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 44 | 44 | B.1.1.519 | 0.001747 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 37 | 37 | B.1.2 | 0.000326 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 26 | 27 | All | 0.000005 |
ORF1ab/nsp12 | 778 | S778C | AgC | TgT | 1 | 27 | All | 0 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 26 | 26 | A.27 | 0.043046 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 23 | 23 | AY.75.1 | 0.004147 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 21 | 22 | All | 0.000004 |
ORF1ab/nsp12 | 778 | S778I | aGC | aTA | 1 | 22 | All | 0 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 19 | 19 | B.1.160 | 0.000593 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 18 | 18 | All | 0.000003 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 18 | 18 | AY.39.1 | 0.000713 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 11 | 11 | B.1.1.232 | 0.019964 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp12 | 778 | S778R | agC | agA | 3 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 778 | S778R | agC | agG | 3 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 778 | S778R | Agc | Cgc | 1 | 7 | All | 0 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 6 | 6 | A.19 | 0.056604 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 6 | 6 | B.1.1.298 | 0.005172 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 778 | S778T | aGc | aCc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 5 | 5 | B | 0.000639 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 3 | 4 | 0.166667 | |
ORF1ab/nsp12 | 778 | S778C | AgC | TgT | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 3 | 0.111111 | |
ORF1ab/nsp12 | 778 | S778Y | AGc | TAc | 2 | 3 | 0.111111 | |
ORF1ab/nsp12 | 778 | S778R | agC | agG | 2 | 3 | 0.111111 | |
ORF1ab/nsp12 | 778 | S778R | agC | agA | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778Y | AGC | TAT | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778N | aGC | aAT | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778Y | AGc | TAc | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 778 | S778Y | AGC | TAT | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 778 | S778X | AGC | TAG | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778X | AgC | TgA | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778I | aGC | aTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778X | AgC | TgA | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 778 | S778L | AGc | CTc | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 778 | S778L | AGC | TTA | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 778 | S778X | AGC | TAG | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778F | AGc | TTc | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778L | AGC | TTA | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778W | AgC | TgG | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778K | aGC | aAG | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 778 | S778F | AGc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 778 | S778W | AgC | TgG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 778 | S778K | aGC | aAG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 778 | S778del2 | AGc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 778 | S778A | AGC | GCA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 778 | S778R | Agc | Cgc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 778 | S778T | aGc | aCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 778 | S778A | AGC | GCA | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 778 | S778R | agC | agA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 778 | S778T | aGc | aCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 778 | S778R | agC | agG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 778 | S778R | agC | agA | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 778 | S778T | aGc | aCc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 778 | S778T | aGc | aCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 778 | S778T | aGc | aCc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.258.24 | 0.010753 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.438.2 | 0.019231 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp12 | 778 | S778C | Agc | Tgc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp12 | 778 | S778I | aGc | aTc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 778 | S778del2 | AGc | --c | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 778 | S778L | AGc | CTc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp12 | 778 | S778G | Agc | Ggc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 778 | S778N | aGc | aAc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 778 | S778del | AGC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp12 | 778 | S778S | agC | agT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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